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PMC:7199903 / 2336-2754 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 177-184 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T23 1-9 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T24 18-20 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T25 18-20 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T26 31-35 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T27 188-189 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 409-412 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 18-20 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T15 101-108 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T16 177-184 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T21 88-92 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T22 164-169 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T374 1-9 NN denotes membrane
T375 10-16 NN denotes fusion
T376 17-18 -LRB- denotes (
T377 18-20 NN denotes S2
T378 21-28 NN denotes subunit
T379 28-29 -RRB- denotes )
T380 30-31 -LRB- denotes (
T381 31-32 CD denotes 4
T382 32-33 -COMMA- denotes ,
T383 34-35 CD denotes 5
T384 35-36 -RRB- denotes )
T385 38-41 DT denotes The
T386 42-49 NN denotes surface
T387 50-52 IN denotes of
T388 53-56 DT denotes the
T389 57-65 NN denotes envelope
T390 66-71 NN denotes spike
T391 72-74 VBZ denotes is
T392 75-84 VBN denotes dominated
T393 85-87 IN denotes by
T394 88-100 JJ denotes host-derived
T395 101-108 NNS denotes glycans
T396 108-109 -COMMA- denotes ,
T397 110-114 IN denotes with
T398 115-119 DT denotes each
T399 120-126 NN denotes trimer
T400 127-137 VBG denotes displaying
T401 138-140 CD denotes 66
T402 141-149 JJ denotes N-linked
T403 150-163 NN denotes glycosylation
T404 164-169 NNS denotes sites
T405 171-174 DT denotes The
T406 175-176 NN denotes S
T407 177-184 NN denotes protein
T408 185-187 VBZ denotes is
T409 188-189 DT denotes a
T410 190-193 JJ denotes key
T411 194-200 NN denotes target
T412 201-203 IN denotes in
T413 204-211 NN denotes vaccine
T414 212-218 NN denotes design
T415 219-226 NNS denotes efforts
T416 227-228 -LRB- denotes (
T417 228-229 CD denotes 6
T418 229-230 -RRB- denotes )
T419 230-231 -COMMA- denotes ,
T420 232-235 CC denotes and
T421 236-249 VBG denotes understanding
T422 250-253 DT denotes the
T423 254-267 NN denotes glycosylation
T424 268-270 IN denotes of
T425 271-282 JJ denotes recombinant
T426 283-288 JJ denotes viral
T427 289-295 NNS denotes spikes
T428 296-299 MD denotes can
T429 300-306 VB denotes reveal
T430 307-318 JJ denotes fundamental
T431 319-327 NNS denotes features
T432 328-330 IN denotes of
T433 331-336 JJ denotes viral
T434 337-344 NN denotes biology
T435 345-348 CC denotes and
T436 349-354 NN denotes guide
T437 355-362 NN denotes vaccine
T438 363-369 NN denotes design
T439 370-380 NNS denotes strategies
T440 381-382 -LRB- denotes (
T441 382-383 CD denotes 7
T442 383-384 -COMMA- denotes ,
T443 385-386 CD denotes 8
T444 386-387 -RRB- denotes )
T445 389-394 JJ denotes Viral
T446 395-408 NN denotes glycosylation
T447 409-412 VBZ denotes has
R430 T431 T432 arg1Of features,of
R431 T434 T432 arg2Of biology,of
R432 T434 T433 arg1Of biology,viral
R433 T431 T435 arg1Of features,and
R434 T439 T435 arg2Of strategies,and
R435 T439 T436 arg1Of strategies,guide
R436 T439 T437 arg1Of strategies,vaccine
R437 T439 T438 arg1Of strategies,design
R438 T439 T440 arg1Of strategies,(
R439 T441 T440 arg2Of 7,(
R440 T444 T440 arg3Of ),(
R441 T441 T442 arg1Of 7,","
R442 T443 T442 arg2Of 8,","
R443 T446 T445 arg1Of glycosylation,Viral
R444 T446 T447 arg1Of glycosylation,has
R372 T375 T374 arg1Of fusion,membrane
R373 T375 T376 arg1Of fusion,(
R374 T378 T376 arg2Of subunit,(
R375 T379 T376 arg3Of ),(
R376 T378 T377 arg1Of subunit,S2
R378 T381 T380 arg2Of 4,(
R379 T384 T380 arg3Of ),(
R380 T381 T382 arg1Of 4,","
R381 T383 T382 arg2Of 5,","
R382 T386 T385 arg1Of surface,The
R383 T386 T387 arg1Of surface,of
R384 T390 T387 arg2Of spike,of
R385 T390 T388 arg1Of spike,the
R386 T390 T389 arg1Of spike,envelope
R387 T386 T391 arg1Of surface,is
R388 T392 T391 arg2Of dominated,is
R389 T386 T392 arg2Of surface,dominated
R390 T392 T393 arg1Of dominated,by
R391 T395 T393 arg2Of glycans,by
R392 T395 T394 arg1Of glycans,host-derived
R393 T392 T396 arg1Of dominated,","
R394 T392 T397 arg1Of dominated,with
R395 T399 T397 arg2Of trimer,with
R396 T400 T397 arg3Of displaying,with
R397 T399 T398 arg1Of trimer,each
R398 T399 T400 arg1Of trimer,displaying
R399 T404 T400 arg2Of sites,displaying
R400 T404 T401 arg1Of sites,66
R401 T404 T402 arg1Of sites,N-linked
R402 T404 T403 arg1Of sites,glycosylation
R403 T407 T405 arg1Of protein,The
R404 T407 T406 arg1Of protein,S
R405 T407 T408 arg1Of protein,is
R406 T411 T408 arg2Of target,is
R407 T411 T409 arg1Of target,a
R408 T411 T410 arg1Of target,key
R409 T411 T412 arg1Of target,in
R410 T415 T412 arg2Of efforts,in
R411 T415 T413 arg1Of efforts,vaccine
R412 T415 T414 arg1Of efforts,design
R413 T415 T416 arg1Of efforts,(
R414 T417 T416 arg2Of 6,(
R415 T418 T416 arg3Of ),(
R416 T420 T419 arg1Of and,","
R417 T408 T420 arg1Of is,and
R418 T429 T420 arg2Of reveal,and
R419 T423 T421 arg2Of glycosylation,understanding
R420 T423 T422 arg1Of glycosylation,the
R421 T423 T424 arg1Of glycosylation,of
R422 T427 T424 arg2Of spikes,of
R423 T427 T425 arg1Of spikes,recombinant
R424 T427 T426 arg1Of spikes,viral
R425 T421 T428 arg1Of understanding,can
R426 T429 T428 arg2Of reveal,can
R427 T421 T429 arg1Of understanding,reveal
R428 T435 T429 arg2Of and,reveal
R429 T431 T430 arg1Of features,fundamental

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T16 177-184 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 101-108 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T13 177-184 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T21 38-170 Sentence denotes The surface of the envelope spike is dominated by host-derived glycans, with each trimer displaying 66 N-linked glycosylation sites.
T22 171-388 Sentence denotes The S protein is a key target in vaccine design efforts (6), and understanding the glycosylation of recombinant viral spikes can reveal fundamental features of viral biology and guide vaccine design strategies (7, 8).

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
89 66-71 Gene denotes spike Gene:43740568
90 175-184 Gene denotes S protein Gene:43740568
96 101-108 Chemical denotes glycans MESH:D011134
97 141-142 Chemical denotes N MESH:D009584

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T185 175-184 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T9 1-16 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T10 150-163 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 254-267 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T12 395-408 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T8 1-16 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T9 150-163 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T10 254-267 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 395-408 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T8 1-16 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T9 141-163 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T10 150-163 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 254-267 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T12 395-408 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 38-170 Sentence denotes The surface of the envelope spike is dominated by host-derived glycans, with each trimer displaying 66 N-linked glycosylation sites.
T22 171-388 Sentence denotes The S protein is a key target in vaccine design efforts (6), and understanding the glycosylation of recombinant viral spikes can reveal fundamental features of viral biology and guide vaccine design strategies (7, 8).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
89 66-71 Gene denotes spike Gene:43740568
90 175-184 Gene denotes S protein Gene:43740568
96 101-108 Chemical denotes glycans MESH:D011134
97 141-142 Chemical denotes N MESH:D009584