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PMC:7199903 / 1956-2226 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 114-121 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 226-230 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 248-255 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 49-58 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 60-68 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T20 226-230 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T21 259-260 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 114-121 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 171-182 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T12 248-255 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T18 221-225 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T19 226-230 http://purl.obolibrary.org/obo/CL_0000000 denotes cell

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T306 0-1 -COMMA- denotes ,
T307 2-9 VBZ denotes induces
T308 10-15 NN denotes fever
T309 15-16 -COMMA- denotes ,
T310 17-23 JJ denotes severe
T311 24-35 JJ denotes respiratory
T312 36-43 NN denotes illness
T313 43-44 -COMMA- denotes ,
T314 45-48 CC denotes and
T315 49-58 NN denotes pneumonia
T316 60-70 NN denotes SARS-CoV-2
T317 71-75 VBZ denotes uses
T318 76-78 DT denotes an
T319 79-90 RB denotes extensively
T320 91-103 VBN denotes glycosylated
T321 104-109 NN denotes spike
T322 110-111 -LRB- denotes (
T323 111-112 NN denotes S
T324 112-113 -RRB- denotes )
T325 114-121 NN denotes protein
T326 122-126 WDT denotes that
T327 127-136 VBZ denotes protrudes
T328 137-141 IN denotes from
T329 142-145 DT denotes the
T330 146-151 JJ denotes viral
T331 152-159 NN denotes surface
T332 160-162 TO denotes to
T333 163-167 VB denotes bind
T334 168-170 TO denotes to
T335 171-193 JJ denotes angiotensin-converting
T336 194-200 NN denotes enzyme
T337 201-202 CD denotes 2
T338 203-204 -LRB- denotes (
T339 204-208 NN denotes ACE2
T340 208-209 -RRB- denotes )
T341 210-212 TO denotes to
T342 213-220 VB denotes mediate
T343 221-230 JJ denotes host-cell
T344 231-236 NN denotes entry
T345 237-238 -LRB- denotes (
T346 238-239 CD denotes 3
T347 239-240 -RRB- denotes )
T348 242-245 DT denotes The
T349 246-247 NN denotes S
T350 248-255 NN denotes protein
T351 256-258 VBZ denotes is
T352 259-260 DT denotes a
T353 261-269 JJ denotes trimeric
R317 T325 T318 arg1Of protein,an
R318 T320 T319 arg1Of glycosylated,extensively
R319 T321 T320 arg1Of spike,glycosylated
R320 T325 T321 arg1Of protein,spike
R321 T321 T322 arg1Of spike,(
R322 T323 T322 arg2Of S,(
R323 T324 T322 arg3Of ),(
R324 T325 T326 arg1Of protein,that
R325 T325 T327 arg1Of protein,protrudes
R326 T327 T328 arg1Of protrudes,from
R304 T307 T306 arg1Of induces,","
R306 T314 T307 arg2Of and,induces
R307 T308 T309 arg1Of fever,","
R308 T312 T309 arg2Of illness,","
R309 T312 T310 arg1Of illness,severe
R310 T312 T311 arg1Of illness,respiratory
R311 T314 T313 arg1Of and,","
R312 T309 T314 arg1Of ",",and
R313 T315 T314 arg2Of pneumonia,and
R314 T316 T317 arg1Of SARS-CoV-2,uses
R315 T325 T317 arg2Of protein,uses
R316 T333 T317 arg3Of bind,uses
R327 T331 T328 arg2Of surface,from
R328 T331 T329 arg1Of surface,the
R329 T331 T330 arg1Of surface,viral
R330 T333 T332 arg1Of bind,to
R331 T316 T333 arg1Of SARS-CoV-2,bind
R332 T333 T334 arg1Of bind,to
R333 T336 T334 arg2Of enzyme,to
R334 T336 T335 arg1Of enzyme,angiotensin-converting
R335 T336 T337 arg1Of enzyme,2
R336 T336 T338 arg1Of enzyme,(
R337 T339 T338 arg2Of ACE2,(
R338 T340 T338 arg3Of ),(
R339 T342 T341 arg1Of mediate,to
R340 T333 T341 modOf bind,to
R341 T344 T342 arg2Of entry,mediate
R342 T344 T343 arg1Of entry,host-cell
R343 T344 T345 arg1Of entry,(
R344 T346 T345 arg2Of 3,(
R345 T347 T345 arg3Of ),(
R346 T350 T348 arg1Of protein,The
R347 T350 T349 arg1Of protein,S
R348 T350 T351 arg1Of protein,is

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T12 114-121 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 226-230 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 248-255 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 114-121 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 171-182 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T10 248-255 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T18 60-70 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T19 60-241 Sentence denotes SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T17 49-58 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 60-70 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
100 24-43 Disease denotes respiratory illness MESH:D012140
101 49-58 Disease denotes pneumonia MESH:D011014
85 104-109 Gene denotes spike Gene:43740568
86 111-112 Gene denotes S Gene:43740568
87 171-202 Gene denotes angiotensin-converting enzyme 2 Gene:59272
88 204-208 Gene denotes ACE2 Gene:59272
91 246-255 Gene denotes S protein Gene:43740568
95 60-70 Species denotes SARS-CoV-2 Tax:2697049
99 10-15 Disease denotes fever MESH:D005334

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T103 110-121 Protein denotes (S) protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T136 171-202 Protein denotes angiotensin-converting enzyme 2 https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1
T151 204-208 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T152 246-255 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 24-43 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T3 49-58 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T1 10-15 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 10-15 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 24-43 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T3 49-58 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 60-241 Sentence denotes SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
85 104-109 Gene denotes spike Gene:43740568
86 111-112 Gene denotes S Gene:43740568
87 171-202 Gene denotes angiotensin-converting enzyme 2 Gene:59272
88 204-208 Gene denotes ACE2 Gene:59272
91 246-255 Gene denotes S protein Gene:43740568
95 60-70 Species denotes SARS-CoV-2 Tax:2697049
99 10-15 Disease denotes fever MESH:D005334
100 24-43 Disease denotes respiratory illness MESH:D012140
101 49-58 Disease denotes pneumonia MESH:D011014