PMC:7199903 / 15029-15454 JSONTXT

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    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T80","span":{"begin":138,"end":141},"obj":"Body_part"},{"id":"T81","span":{"begin":254,"end":267},"obj":"Body_part"},{"id":"T82","span":{"begin":314,"end":319},"obj":"Body_part"},{"id":"T83","span":{"begin":409,"end":415},"obj":"Body_part"},{"id":"T84","span":{"begin":419,"end":424},"obj":"Body_part"}],"attributes":[{"id":"A80","pred":"fma_id","subj":"T80","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A81","pred":"fma_id","subj":"T81","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A82","pred":"fma_id","subj":"T82","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A83","pred":"fma_id","subj":"T83","obj":"http://purl.org/sig/ont/fma/fma7203"},{"id":"A84","pred":"fma_id","subj":"T84","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-PD-UBERON

    {"project":"LitCovid-PD-UBERON","denotations":[{"id":"T4","span":{"begin":409,"end":415},"obj":"Body_part"}],"attributes":[{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0002113"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T53","span":{"begin":86,"end":94},"obj":"Disease"},{"id":"T54","span":{"begin":105,"end":113},"obj":"Disease"}],"attributes":[{"id":"A53","pred":"mondo_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T89","span":{"begin":309,"end":319},"obj":"http://purl.obolibrary.org/obo/CLO_0054159"},{"id":"T90","span":{"begin":364,"end":369},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T91","span":{"begin":409,"end":415},"obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"T92","span":{"begin":409,"end":415},"obj":"http://www.ebi.ac.uk/efo/EFO_0000927"},{"id":"T93","span":{"begin":409,"end":415},"obj":"http://www.ebi.ac.uk/efo/EFO_0000929"},{"id":"T94","span":{"begin":419,"end":424},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T152","span":{"begin":254,"end":267},"obj":"Chemical"},{"id":"T153","span":{"begin":416,"end":418},"obj":"Chemical"}],"attributes":[{"id":"A152","pred":"chebi_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-PD-IDO

    {"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T66","span":{"begin":157,"end":161},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"},{"id":"T67","span":{"begin":314,"end":319},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T68","span":{"begin":364,"end":369},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T69","span":{"begin":419,"end":424},"obj":"http://purl.obolibrary.org/obo/CL_0000000"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-Enju

    {"project":"LitCovid-sample-Enju","denotations":[{"id":"T98166","span":{"begin":0,"end":4},"obj":"NNP"},{"id":"T19270","span":{"begin":5,"end":6},"obj":"CD"},{"id":"T62291","span":{"begin":8,"end":23},"obj":"NN"},{"id":"T85384","span":{"begin":24,"end":26},"obj":"IN"},{"id":"T57188","span":{"begin":27,"end":32},"obj":"JJ"},{"id":"T62225","span":{"begin":33,"end":39},"obj":"NN"},{"id":"T89247","span":{"begin":40,"end":47},"obj":"NNS"},{"id":"T41336","span":{"begin":49,"end":53},"obj":"IN"},{"id":"T97920","span":{"begin":54,"end":58},"obj":"VBN"},{"id":"T3138","span":{"begin":59,"end":61},"obj":"TO"},{"id":"T98195","span":{"begin":62,"end":67},"obj":"NN"},{"id":"T98726","span":{"begin":67,"end":68},"obj":"-COMMA-"},{"id":"T65645","span":{"begin":69,"end":77},"obj":"NN"},{"id":"T55778","span":{"begin":78,"end":79},"obj":"NN"},{"id":"T79525","span":{"begin":80,"end":81},"obj":"-LRB-"},{"id":"T68767","span":{"begin":81,"end":83},"obj":"CD"},{"id":"T41460","span":{"begin":83,"end":84},"obj":"-RRB-"},{"id":"T31844","span":{"begin":84,"end":85},"obj":"-COMMA-"},{"id":"T7043","span":{"begin":86,"end":96},"obj":"NN"},{"id":"T97863","span":{"begin":97,"end":98},"obj":"NN"},{"id":"T92081","span":{"begin":99,"end":100},"obj":"-LRB-"},{"id":"T69656","span":{"begin":100,"end":102},"obj":"CD"},{"id":"T67545","span":{"begin":102,"end":103},"obj":"-RRB-"},{"id":"T47349","span":{"begin":103,"end":104},"obj":"-COMMA-"},{"id":"T62941","span":{"begin":105,"end":115},"obj":"NN"},{"id":"T30429","span":{"begin":116,"end":117},"obj":"NNP"},{"id":"T58688","span":{"begin":117,"end":118},"obj":"-COMMA-"},{"id":"T40283","span":{"begin":119,"end":123},"obj":"NN"},{"id":"T77775","span":{"begin":124,"end":127},"obj":"NN"},{"id":"T96446","span":{"begin":128,"end":129},"obj":"-LRB-"},{"id":"T18926","span":{"begin":129,"end":131},"obj":"CD"},{"id":"T91299","span":{"begin":131,"end":132},"obj":"-RRB-"},{"id":"T3350","span":{"begin":132,"end":133},"obj":"-COMMA-"},{"id":"T10998","span":{"begin":134,"end":137},"obj":"CC"},{"id":"T7671","span":{"begin":138,"end":143},"obj":"NN"},{"id":"T16812","span":{"begin":144,"end":147},"obj":"NN"},{"id":"T28102","span":{"begin":148,"end":149},"obj":"-LRB-"},{"id":"T93293","span":{"begin":149,"end":150},"obj":"CD"},{"id":"T27600","span":{"begin":150,"end":151},"obj":"-COMMA-"},{"id":"T65727","span":{"begin":152,"end":154},"obj":"CD"},{"id":"T28148","span":{"begin":154,"end":155},"obj":"-RRB-"},{"id":"T15226","span":{"begin":157,"end":170},"obj":"JJ"},{"id":"T75794","span":{"begin":171,"end":179},"obj":"JJ"},{"id":"T71346","span":{"begin":180,"end":186},"obj":"NN"},{"id":"T89202","span":{"begin":187,"end":199},"obj":"NN"},{"id":"T68062","span":{"begin":200,"end":215},"obj":"NNS"},{"id":"T84121","span":{"begin":216,"end":219},"obj":"VBP"},{"id":"T74313","span":{"begin":220,"end":227},"obj":"VBN"},{"id":"T62704","span":{"begin":228,"end":237},"obj":"VBG"},{"id":"T82646","span":{"begin":238,"end":240},"obj":"TO"},{"id":"T60233","span":{"begin":241,"end":244},"obj":"DT"},{"id":"T78311","span":{"begin":245,"end":248},"obj":"NN"},{"id":"T46576","span":{"begin":250,"end":253},"obj":"DT"},{"id":"T7521","span":{"begin":254,"end":267},"obj":"NNS"},{"id":"T49353","span":{"begin":268,"end":272},"obj":"VBD"},{"id":"T79250","span":{"begin":273,"end":282},"obj":"VBN"},{"id":"T39461","span":{"begin":283,"end":285},"obj":"IN"},{"id":"T6442","span":{"begin":286,"end":293},"obj":"JJ"},{"id":"T51716","span":{"begin":294,"end":301},"obj":"NNS"},{"id":"T96313","span":{"begin":302,"end":304},"obj":"IN"},{"id":"T76075","span":{"begin":305,"end":308},"obj":"NN"},{"id":"T83301","span":{"begin":309,"end":313},"obj":"NN"},{"id":"T61867","span":{"begin":314,"end":319},"obj":"NNS"},{"id":"T91642","span":{"begin":320,"end":325},"obj":"RB"},{"id":"T87881","span":{"begin":326,"end":330},"obj":"IN"},{"id":"T78049","span":{"begin":331,"end":335},"obj":"NN"},{"id":"T7141","span":{"begin":336,"end":339},"obj":"NN"},{"id":"T10679","span":{"begin":339,"end":340},"obj":"-COMMA-"},{"id":"T35984","span":{"begin":341,"end":346},"obj":"WDT"},{"id":"T80005","span":{"begin":347,"end":350},"obj":"VBD"},{"id":"T17581","span":{"begin":351,"end":358},"obj":"VBN"},{"id":"T67465","span":{"begin":359,"end":363},"obj":"IN"},{"id":"T10445","span":{"begin":364,"end":374},"obj":"JJ"},{"id":"T56154","span":{"begin":375,"end":384},"obj":"NNS"},{"id":"T16557","span":{"begin":385,"end":389},"obj":"IN"},{"id":"T21578","span":{"begin":390,"end":401},"obj":"JJ"},{"id":"T80613","span":{"begin":402,"end":408},"obj":"JJ"},{"id":"T39899","span":{"begin":409,"end":415},"obj":"NN"},{"id":"T98529","span":{"begin":416,"end":418},"obj":"CD"},{"id":"T92146","span":{"begin":419,"end":424},"obj":"NNS"}],"relations":[{"id":"R89197","pred":"arg1Of","subj":"T62291","obj":"T98166"},{"id":"R84661","pred":"arg1Of","subj":"T98166","obj":"T19270"},{"id":"R51308","pred":"arg1Of","subj":"T62291","obj":"T85384"},{"id":"R71839","pred":"arg2Of","subj":"T89247","obj":"T85384"},{"id":"R89181","pred":"arg1Of","subj":"T89247","obj":"T57188"},{"id":"R67722","pred":"arg1Of","subj":"T89247","obj":"T62225"},{"id":"R98005","pred":"arg1Of","subj":"T97920","obj":"T41336"},{"id":"R78400","pred":"arg2Of","subj":"T30429","obj":"T97920"},{"id":"R34582","pred":"arg1Of","subj":"T97920","obj":"T3138"},{"id":"R7903","pred":"arg2Of","subj":"T51716","obj":"T39461"},{"id":"R21278","pred":"arg1Of","subj":"T51716","obj":"T6442"},{"id":"R19609","pred":"arg1Of","subj":"T51716","obj":"T96313"},{"id":"R79690","pred":"arg2Of","subj":"T61867","obj":"T96313"},{"id":"R12669","pred":"arg1Of","subj":"T61867","obj":"T76075"},{"id":"R98845","pred":"arg1Of","subj":"T61867","obj":"T83301"},{"id":"R82558","pred":"arg1Of","subj":"T87881","obj":"T91642"},{"id":"R94995","pred":"arg1Of","subj":"T79250","obj":"T87881"},{"id":"R66598","pred":"arg2Of","subj":"T7141","obj":"T87881"},{"id":"R42036","pred":"arg1Of","subj":"T7141","obj":"T78049"},{"id":"R16316","pred":"arg1Of","subj":"T7141","obj":"T10679"},{"id":"R37379","pred":"arg1Of","subj":"T7141","obj":"T35984"},{"id":"R19640","pred":"arg1Of","subj":"T7141","obj":"T80005"},{"id":"R64365","pred":"arg2Of","subj":"T31844","obj":"T3138"},{"id":"R91843","pred":"arg1Of","subj":"T98195","obj":"T98726"},{"id":"R68196","pred":"arg2Of","subj":"T55778","obj":"T98726"},{"id":"R92830","pred":"arg1Of","subj":"T55778","obj":"T65645"},{"id":"R48191","pred":"arg1Of","subj":"T55778","obj":"T79525"},{"id":"R65364","pred":"arg2Of","subj":"T68767","obj":"T79525"},{"id":"R88214","pred":"arg3Of","subj":"T41460","obj":"T79525"},{"id":"R84018","pred":"arg1Of","subj":"T98195","obj":"T31844"},{"id":"R61414","pred":"arg2Of","subj":"T97863","obj":"T31844"},{"id":"R19513","pred":"arg1Of","subj":"T97863","obj":"T7043"},{"id":"R90484","pred":"arg1Of","subj":"T97863","obj":"T92081"},{"id":"R69896","pred":"arg2Of","subj":"T69656","obj":"T92081"},{"id":"R70766","pred":"arg3Of","subj":"T67545","obj":"T92081"},{"id":"R89840","pred":"arg1Of","subj":"T97920","obj":"T47349"},{"id":"R71566","pred":"arg1Of","subj":"T30429","obj":"T62941"},{"id":"R19774","pred":"arg1Of","subj":"T30429","obj":"T58688"},{"id":"R99060","pred":"arg2Of","subj":"T77775","obj":"T58688"},{"id":"R59944","pred":"arg1Of","subj":"T77775","obj":"T40283"},{"id":"R46010","pred":"arg1Of","subj":"T77775","obj":"T96446"},{"id":"R31694","pred":"arg2Of","subj":"T18926","obj":"T96446"},{"id":"R65536","pred":"arg3Of","subj":"T91299","obj":"T96446"},{"id":"R55994","pred":"arg1Of","subj":"T10998","obj":"T3350"},{"id":"R88003","pred":"arg1Of","subj":"T30429","obj":"T10998"},{"id":"R99442","pred":"arg2Of","subj":"T16812","obj":"T10998"},{"id":"R69151","pred":"arg1Of","subj":"T16812","obj":"T7671"},{"id":"R61424","pred":"arg1Of","subj":"T16812","obj":"T28102"},{"id":"R5445","pred":"arg2Of","subj":"T93293","obj":"T28102"},{"id":"R98014","pred":"arg3Of","subj":"T28148","obj":"T28102"},{"id":"R40617","pred":"arg1Of","subj":"T93293","obj":"T27600"},{"id":"R50318","pred":"arg2Of","subj":"T65727","obj":"T27600"},{"id":"R42581","pred":"arg1Of","subj":"T68062","obj":"T15226"},{"id":"R51067","pred":"arg1Of","subj":"T68062","obj":"T75794"},{"id":"R80570","pred":"arg1Of","subj":"T68062","obj":"T71346"},{"id":"R15302","pred":"arg1Of","subj":"T68062","obj":"T89202"},{"id":"R56700","pred":"arg1Of","subj":"T68062","obj":"T84121"},{"id":"R31034","pred":"arg2Of","subj":"T74313","obj":"T84121"},{"id":"R95938","pred":"arg2Of","subj":"T68062","obj":"T74313"},{"id":"R85383","pred":"arg1Of","subj":"T74313","obj":"T62704"},{"id":"R25408","pred":"arg2Of","subj":"T82646","obj":"T62704"},{"id":"R6191","pred":"arg2Of","subj":"T78311","obj":"T82646"},{"id":"R86230","pred":"arg1Of","subj":"T78311","obj":"T60233"},{"id":"R44949","pred":"arg1Of","subj":"T7521","obj":"T46576"},{"id":"R86689","pred":"arg1Of","subj":"T7521","obj":"T49353"},{"id":"R23683","pred":"arg2Of","subj":"T79250","obj":"T49353"},{"id":"R71973","pred":"arg2Of","subj":"T7521","obj":"T79250"},{"id":"R19814","pred":"arg1Of","subj":"T79250","obj":"T39461"},{"id":"R51360","pred":"arg2Of","subj":"T17581","obj":"T80005"},{"id":"R67493","pred":"arg2Of","subj":"T7141","obj":"T17581"},{"id":"R24293","pred":"arg1Of","subj":"T17581","obj":"T67465"},{"id":"R94686","pred":"arg2Of","subj":"T56154","obj":"T67465"},{"id":"R47738","pred":"arg1Of","subj":"T56154","obj":"T10445"},{"id":"R16827","pred":"arg1Of","subj":"T56154","obj":"T16557"},{"id":"R61880","pred":"arg2Of","subj":"T92146","obj":"T16557"},{"id":"R18138","pred":"arg1Of","subj":"T92146","obj":"T21578"},{"id":"R79336","pred":"arg1Of","subj":"T92146","obj":"T80613"},{"id":"R77697","pred":"arg1Of","subj":"T92146","obj":"T39899"},{"id":"R1683","pred":"arg1Of","subj":"T92146","obj":"T98529"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-PD-FMA

    {"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T79","span":{"begin":138,"end":141},"obj":"Body_part"},{"id":"T80","span":{"begin":254,"end":267},"obj":"Body_part"},{"id":"T81","span":{"begin":314,"end":319},"obj":"Body_part"},{"id":"T82","span":{"begin":409,"end":415},"obj":"Body_part"},{"id":"T83","span":{"begin":419,"end":424},"obj":"Body_part"}],"attributes":[{"id":"A81","pred":"fma_id","subj":"T81","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A79","pred":"fma_id","subj":"T79","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A80","pred":"fma_id","subj":"T80","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A83","pred":"fma_id","subj":"T83","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A82","pred":"fma_id","subj":"T82","obj":"http://purl.org/sig/ont/fma/fma7203"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-CHEBI

    {"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T116","span":{"begin":254,"end":267},"obj":"Chemical"}],"attributes":[{"id":"A116","pred":"chebi_id","subj":"T116","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-PD-NCBITaxon

    {"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T61","span":{"begin":69,"end":77},"obj":"Species"},{"id":"T62","span":{"begin":86,"end":94},"obj":"Species"},{"id":"T63","span":{"begin":105,"end":115},"obj":"Species"},{"id":"T64","span":{"begin":119,"end":123},"obj":"Species"},{"id":"T65","span":{"begin":138,"end":143},"obj":"Species"},{"id":"T66","span":{"begin":331,"end":335},"obj":"Species"}],"attributes":[{"id":"A63","pred":"ncbi_taxonomy_id","subj":"T63","obj":"NCBItxid:2697049"},{"id":"A65","pred":"ncbi_taxonomy_id","subj":"T65","obj":"NCBItxid:11676"},{"id":"A62","pred":"ncbi_taxonomy_id","subj":"T62","obj":"NCBItxid:694009"},{"id":"A66","pred":"ncbi_taxonomy_id","subj":"T66","obj":"NCBItxid:11620"},{"id":"A61","pred":"ncbi_taxonomy_id","subj":"T61","obj":"NCBItxid:1335626"},{"id":"A64","pred":"ncbi_taxonomy_id","subj":"T64","obj":"NCBItxid:11620"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-sentences

    {"project":"LitCovid-sample-sentences","denotations":[{"id":"T97","span":{"begin":0,"end":48},"obj":"Sentence"},{"id":"T98","span":{"begin":49,"end":156},"obj":"Sentence"},{"id":"T99","span":{"begin":157,"end":249},"obj":"Sentence"},{"id":"T100","span":{"begin":250,"end":425},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-PD-UBERON

    {"project":"LitCovid-sample-PD-UBERON","denotations":[{"id":"T4","span":{"begin":409,"end":415},"obj":"Body_part"}],"attributes":[{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0002113"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-PD-MONDO

    {"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T47","span":{"begin":86,"end":94},"obj":"Disease"},{"id":"T48","span":{"begin":105,"end":115},"obj":"Disease"}],"attributes":[{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-Pubtator

    {"project":"LitCovid-sample-Pubtator","denotations":[{"id":"509","span":{"begin":33,"end":39},"obj":"Chemical"},{"id":"523","span":{"begin":124,"end":127},"obj":"Gene"},{"id":"525","span":{"begin":336,"end":339},"obj":"Gene"},{"id":"526","span":{"begin":116,"end":117},"obj":"Gene"},{"id":"527","span":{"begin":69,"end":77},"obj":"Species"},{"id":"529","span":{"begin":105,"end":115},"obj":"Species"},{"id":"531","span":{"begin":119,"end":123},"obj":"Species"},{"id":"532","span":{"begin":331,"end":335},"obj":"Species"},{"id":"533","span":{"begin":171,"end":186},"obj":"Chemical"},{"id":"534","span":{"begin":187,"end":199},"obj":"Chemical"},{"id":"535","span":{"begin":305,"end":313},"obj":"CellLine"}],"attributes":[{"id":"A525","pred":"pubann:denotes","subj":"525","obj":"Gene:2995"},{"id":"A531","pred":"pubann:denotes","subj":"531","obj":"Tax:11620"},{"id":"A527","pred":"pubann:denotes","subj":"527","obj":"Tax:1335626"},{"id":"A523","pred":"pubann:denotes","subj":"523","obj":"Gene:2995"},{"id":"A529","pred":"pubann:denotes","subj":"529","obj":"Tax:2697049"},{"id":"A509","pred":"pubann:denotes","subj":"509","obj":"MESH:D011134"},{"id":"A532","pred":"pubann:denotes","subj":"532","obj":"Tax:11620"},{"id":"A526","pred":"pubann:denotes","subj":"526","obj":"Gene:43740568"},{"id":"A535","pred":"pubann:denotes","subj":"535","obj":"CVCL:6642"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-UniProt

    {"project":"LitCovid-sample-UniProt","denotations":[{"id":"T2359","span":{"begin":124,"end":127},"obj":"Protein"},{"id":"T2360","span":{"begin":144,"end":147},"obj":"Protein"},{"id":"T2361","span":{"begin":254,"end":267},"obj":"Protein"},{"id":"T2446","span":{"begin":305,"end":308},"obj":"Protein"},{"id":"T2449","span":{"begin":336,"end":339},"obj":"Protein"}],"attributes":[{"id":"A2359","pred":"uniprot_id","subj":"T2359","obj":"https://www.uniprot.org/uniprot/P03711"},{"id":"A2360","pred":"uniprot_id","subj":"T2360","obj":"https://www.uniprot.org/uniprot/C1JJY3"},{"id":"A2361","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q9QSP1"},{"id":"A2362","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q9QJT6"},{"id":"A2363","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q9JGT4"},{"id":"A2364","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q9IPJ6"},{"id":"A2365","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q9DIC6"},{"id":"A2366","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q91DS0"},{"id":"A2367","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q91C28"},{"id":"A2368","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8QQA2"},{"id":"A2369","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8QPE5"},{"id":"A2370","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8QPE4"},{"id":"A2371","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8QPE3"},{"id":"A2372","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8JTH0"},{"id":"A2373","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8BDV6"},{"id":"A2374","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8B6J6"},{"id":"A2375","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8B0I1"},{"id":"A2376","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8B0H6"},{"id":"A2377","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q8B0H1"},{"id":"A2378","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q89669"},{"id":"A2379","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q85213"},{"id":"A2380","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q82706"},{"id":"A2381","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q82683"},{"id":"A2382","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q82020"},{"id":"A2383","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q787B5"},{"id":"A2384","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q77SK0"},{"id":"A2385","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q77N36"},{"id":"A2386","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q76G52"},{"id":"A2387","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q75T09"},{"id":"A2388","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q6X1D5"},{"id":"A2389","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q6X1D1"},{"id":"A2390","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q6TYA0"},{"id":"A2391","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q6E0W7"},{"id":"A2392","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q66T62"},{"id":"A2393","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5VKP3"},{"id":"A2394","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5VKN9"},{"id":"A2395","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5K2K4"},{"id":"A2396","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX93"},{"id":"A2397","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX92"},{"id":"A2398","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX91"},{"id":"A2399","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX90"},{"id":"A2400","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX89"},{"id":"A2401","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX88"},{"id":"A2402","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5IX87"},{"id":"A2403","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q5GA86"},{"id":"A2404","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q58FH1"},{"id":"A2405","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q4VKV3"},{"id":"A2406","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q4F900"},{"id":"A2407","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q49LL3"},{"id":"A2408","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q49IU2"},{"id":"A2409","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q49IU1"},{"id":"A2410","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q49IT9"},{"id":"A2411","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q49IT8"},{"id":"A2412","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q49AV0"},{"id":"A2413","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q0GBY1"},{"id":"A2414","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q0GBX6"},{"id":"A2415","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/Q08089"},{"id":"A2416","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P32595"},{"id":"A2417","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P32550"},{"id":"A2418","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P19462"},{"id":"A2419","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P16288"},{"id":"A2420","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P15199"},{"id":"A2421","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P13180"},{"id":"A2422","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P0C572"},{"id":"A2423","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P08667"},{"id":"A2424","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P08163"},{"id":"A2425","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P07923"},{"id":"A2426","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P04884"},{"id":"A2427","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P04883"},{"id":"A2428","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P04882"},{"id":"A2429","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P03524"},{"id":"A2430","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/P03522"},{"id":"A2431","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/O92284"},{"id":"A2432","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/O56677"},{"id":"A2433","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/O10236"},{"id":"A2434","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/J7HBH4"},{"id":"A2435","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/D8V075"},{"id":"A2436","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A7WNB3"},{"id":"A2437","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A4UHQ6"},{"id":"A2438","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A4UHQ1"},{"id":"A2439","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3RM22"},{"id":"A2440","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3F5R8"},{"id":"A2441","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3F5R3"},{"id":"A2442","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3F5Q8"},{"id":"A2443","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3F5N3"},{"id":"A2444","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3F5M3"},{"id":"A2445","pred":"uniprot_id","subj":"T2361","obj":"https://www.uniprot.org/uniprot/A3F5L8"},{"id":"A2446","pred":"uniprot_id","subj":"T2446","obj":"https://www.uniprot.org/uniprot/Q9H2V4"},{"id":"A2447","pred":"uniprot_id","subj":"T2446","obj":"https://www.uniprot.org/uniprot/Q9H2V3"},{"id":"A2448","pred":"uniprot_id","subj":"T2446","obj":"https://www.uniprot.org/uniprot/P29320"},{"id":"A2449","pred":"uniprot_id","subj":"T2449","obj":"https://www.uniprot.org/uniprot/P03711"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-PD-MAT

    {"project":"LitCovid-sample-PD-MAT","denotations":[{"id":"T5","span":{"begin":409,"end":415},"obj":"http://purl.obolibrary.org/obo/MAT_0000119"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sample-Glycan

    {"project":"LitCovid-sample-Glycan","denotations":[{"id":"T83","span":{"begin":250,"end":253},"obj":"https://glytoucan.org/Structures/Glycans/G05518TD"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T97","span":{"begin":0,"end":48},"obj":"Sentence"},{"id":"T98","span":{"begin":49,"end":156},"obj":"Sentence"},{"id":"T99","span":{"begin":157,"end":249},"obj":"Sentence"},{"id":"T100","span":{"begin":250,"end":425},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"509","span":{"begin":33,"end":39},"obj":"Chemical"},{"id":"523","span":{"begin":124,"end":127},"obj":"Gene"},{"id":"524","span":{"begin":144,"end":147},"obj":"Gene"},{"id":"525","span":{"begin":336,"end":339},"obj":"Gene"},{"id":"526","span":{"begin":116,"end":117},"obj":"Gene"},{"id":"527","span":{"begin":69,"end":77},"obj":"Species"},{"id":"528","span":{"begin":86,"end":94},"obj":"Species"},{"id":"529","span":{"begin":105,"end":115},"obj":"Species"},{"id":"530","span":{"begin":138,"end":143},"obj":"Species"},{"id":"531","span":{"begin":119,"end":123},"obj":"Species"},{"id":"532","span":{"begin":331,"end":335},"obj":"Species"},{"id":"533","span":{"begin":171,"end":186},"obj":"Chemical"},{"id":"534","span":{"begin":187,"end":199},"obj":"Chemical"},{"id":"535","span":{"begin":305,"end":313},"obj":"CellLine"}],"attributes":[{"id":"A509","pred":"tao:has_database_id","subj":"509","obj":"MESH:D011134"},{"id":"A523","pred":"tao:has_database_id","subj":"523","obj":"Gene:2995"},{"id":"A524","pred":"tao:has_database_id","subj":"524","obj":"Gene:100616444"},{"id":"A525","pred":"tao:has_database_id","subj":"525","obj":"Gene:2995"},{"id":"A526","pred":"tao:has_database_id","subj":"526","obj":"Gene:43740568"},{"id":"A527","pred":"tao:has_database_id","subj":"527","obj":"Tax:1335626"},{"id":"A528","pred":"tao:has_database_id","subj":"528","obj":"Tax:694009"},{"id":"A529","pred":"tao:has_database_id","subj":"529","obj":"Tax:2697049"},{"id":"A530","pred":"tao:has_database_id","subj":"530","obj":"Tax:11676"},{"id":"A531","pred":"tao:has_database_id","subj":"531","obj":"Tax:11620"},{"id":"A532","pred":"tao:has_database_id","subj":"532","obj":"Tax:11620"},{"id":"A535","pred":"tao:has_database_id","subj":"535","obj":"CVCL:6642"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Fig. 4 Underprocessing of viral glycan shields.\nFrom left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21). Site-specific N-linked glycan oligomannose quantifications are colored according to the key. All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells."}