> top > docs > PMC:7199903 > spans > 15029-15454 > annotations

PMC:7199903 / 15029-15454 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T80 138-141 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T81 254-267 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T82 314-319 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T83 409-415 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T84 419-424 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 409-415 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T53 86-94 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 105-113 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T89 309-319 http://purl.obolibrary.org/obo/CLO_0054159 denotes 293F cells
T90 364-369 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T91 409-415 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T92 409-415 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T93 409-415 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T94 419-424 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T152 254-267 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T153 416-418 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T66 157-161 http://purl.obolibrary.org/obo/BFO_0000029 denotes Site
T67 314-319 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T68 364-369 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T69 419-424 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T98166 0-4 NNP denotes Fig.
T19270 5-6 CD denotes 4
T62291 8-23 NN denotes Underprocessing
T85384 24-26 IN denotes of
T57188 27-32 JJ denotes viral
T62225 33-39 NN denotes glycan
T89247 40-47 NNS denotes shields
T41336 49-53 IN denotes From
T97920 54-58 VBN denotes left
T3138 59-61 TO denotes to
T98195 62-67 NN denotes right
T98726 67-68 -COMMA- denotes ,
T65645 69-77 NN denotes MERS-CoV
T55778 78-79 NN denotes S
T79525 80-81 -LRB- denotes (
T68767 81-83 CD denotes 10
T41460 83-84 -RRB- denotes )
T31844 84-85 -COMMA- denotes ,
T7043 86-96 NN denotes SARS-CoV-1
T97863 97-98 NN denotes S
T92081 99-100 -LRB- denotes (
T69656 100-102 CD denotes 10
T67545 102-103 -RRB- denotes )
T47349 103-104 -COMMA- denotes ,
T62941 105-115 NN denotes SARS-CoV-2
T30429 116-117 NNP denotes S
T58688 117-118 -COMMA- denotes ,
T40283 119-123 NN denotes LASV
T77775 124-127 NN denotes GPC
T96446 128-129 -LRB- denotes (
T18926 129-131 CD denotes 24
T91299 131-132 -RRB- denotes )
T3350 132-133 -COMMA- denotes ,
T10998 134-137 CC denotes and
T7671 138-143 NN denotes HIV-1
T16812 144-147 NN denotes Env
T28102 148-149 -LRB- denotes (
T93293 149-150 CD denotes 8
T27600 150-151 -COMMA- denotes ,
T65727 152-154 CD denotes 21
T28148 154-155 -RRB- denotes )
T15226 157-170 JJ denotes Site-specific
T75794 171-179 JJ denotes N-linked
T71346 180-186 NN denotes glycan
T89202 187-199 NN denotes oligomannose
T68062 200-215 NNS denotes quantifications
T84121 216-219 VBP denotes are
T74313 220-227 VBN denotes colored
T62704 228-237 VBG denotes according
T82646 238-240 TO denotes to
T60233 241-244 DT denotes the
T78311 245-248 NN denotes key
T46576 250-253 DT denotes All
T7521 254-267 NNS denotes glycoproteins
T49353 268-272 VBD denotes were
T79250 273-282 VBN denotes expressed
T39461 283-285 IN denotes as
T6442 286-293 JJ denotes soluble
T51716 294-301 NNS denotes trimers
T96313 302-304 IN denotes in
T76075 305-308 NN denotes HEK
T83301 309-313 NN denotes 293F
T61867 314-319 NNS denotes cells
T91642 320-325 RB denotes apart
T87881 326-330 IN denotes from
T78049 331-335 NN denotes LASV
T7141 336-339 NN denotes GPC
T10679 339-340 -COMMA- denotes ,
T35984 341-346 WDT denotes which
T80005 347-350 VBD denotes was
T17581 351-358 VBN denotes derived
T67465 359-363 IN denotes from
T10445 364-374 JJ denotes virus-like
T56154 375-384 NNS denotes particles
T16557 385-389 IN denotes from
T21578 390-401 JJ denotes Madin-Darby
T80613 402-408 JJ denotes canine
T39899 409-415 NN denotes kidney
T98529 416-418 CD denotes II
T92146 419-424 NNS denotes cells
R89197 T62291 T98166 arg1Of Underprocessing,Fig.
R84661 T98166 T19270 arg1Of Fig.,4
R51308 T62291 T85384 arg1Of Underprocessing,of
R71839 T89247 T85384 arg2Of shields,of
R89181 T89247 T57188 arg1Of shields,viral
R67722 T89247 T62225 arg1Of shields,glycan
R98005 T97920 T41336 arg1Of left,From
R78400 T30429 T97920 arg2Of S,left
R34582 T97920 T3138 arg1Of left,to
R7903 T51716 T39461 arg2Of trimers,as
R21278 T51716 T6442 arg1Of trimers,soluble
R19609 T51716 T96313 arg1Of trimers,in
R79690 T61867 T96313 arg2Of cells,in
R12669 T61867 T76075 arg1Of cells,HEK
R98845 T61867 T83301 arg1Of cells,293F
R82558 T87881 T91642 arg1Of from,apart
R94995 T79250 T87881 arg1Of expressed,from
R66598 T7141 T87881 arg2Of GPC,from
R42036 T7141 T78049 arg1Of GPC,LASV
R16316 T7141 T10679 arg1Of GPC,","
R37379 T7141 T35984 arg1Of GPC,which
R19640 T7141 T80005 arg1Of GPC,was
R64365 T31844 T3138 arg2Of ",",to
R91843 T98195 T98726 arg1Of right,","
R68196 T55778 T98726 arg2Of S,","
R92830 T55778 T65645 arg1Of S,MERS-CoV
R48191 T55778 T79525 arg1Of S,(
R65364 T68767 T79525 arg2Of 10,(
R88214 T41460 T79525 arg3Of ),(
R84018 T98195 T31844 arg1Of right,","
R61414 T97863 T31844 arg2Of S,","
R19513 T97863 T7043 arg1Of S,SARS-CoV-1
R90484 T97863 T92081 arg1Of S,(
R69896 T69656 T92081 arg2Of 10,(
R70766 T67545 T92081 arg3Of ),(
R89840 T97920 T47349 arg1Of left,","
R71566 T30429 T62941 arg1Of S,SARS-CoV-2
R19774 T30429 T58688 arg1Of S,","
R99060 T77775 T58688 arg2Of GPC,","
R59944 T77775 T40283 arg1Of GPC,LASV
R46010 T77775 T96446 arg1Of GPC,(
R31694 T18926 T96446 arg2Of 24,(
R65536 T91299 T96446 arg3Of ),(
R55994 T10998 T3350 arg1Of and,","
R88003 T30429 T10998 arg1Of S,and
R99442 T16812 T10998 arg2Of Env,and
R69151 T16812 T7671 arg1Of Env,HIV-1
R61424 T16812 T28102 arg1Of Env,(
R5445 T93293 T28102 arg2Of 8,(
R98014 T28148 T28102 arg3Of ),(
R40617 T93293 T27600 arg1Of 8,","
R50318 T65727 T27600 arg2Of 21,","
R42581 T68062 T15226 arg1Of quantifications,Site-specific
R51067 T68062 T75794 arg1Of quantifications,N-linked
R80570 T68062 T71346 arg1Of quantifications,glycan
R15302 T68062 T89202 arg1Of quantifications,oligomannose
R56700 T68062 T84121 arg1Of quantifications,are
R31034 T74313 T84121 arg2Of colored,are
R95938 T68062 T74313 arg2Of quantifications,colored
R85383 T74313 T62704 arg1Of colored,according
R25408 T82646 T62704 arg2Of to,according
R6191 T78311 T82646 arg2Of key,to
R86230 T78311 T60233 arg1Of key,the
R44949 T7521 T46576 arg1Of glycoproteins,All
R86689 T7521 T49353 arg1Of glycoproteins,were
R23683 T79250 T49353 arg2Of expressed,were
R71973 T7521 T79250 arg2Of glycoproteins,expressed
R19814 T79250 T39461 arg1Of expressed,as
R51360 T17581 T80005 arg2Of derived,was
R67493 T7141 T17581 arg2Of GPC,derived
R24293 T17581 T67465 arg1Of derived,from
R94686 T56154 T67465 arg2Of particles,from
R47738 T56154 T10445 arg1Of particles,virus-like
R16827 T56154 T16557 arg1Of particles,from
R61880 T92146 T16557 arg2Of cells,from
R18138 T92146 T21578 arg1Of cells,Madin-Darby
R79336 T92146 T80613 arg1Of cells,canine
R77697 T92146 T39899 arg1Of cells,kidney
R1683 T92146 T98529 arg1Of cells,II

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T79 138-141 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T80 254-267 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T81 314-319 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T82 409-415 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T83 419-424 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T116 254-267 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T61 69-77 Species denotes MERS-CoV NCBItxid:1335626
T62 86-94 Species denotes SARS-CoV NCBItxid:694009
T63 105-115 Species denotes SARS-CoV-2 NCBItxid:2697049
T64 119-123 Species denotes LASV NCBItxid:11620
T65 138-143 Species denotes HIV-1 NCBItxid:11676
T66 331-335 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T97 0-48 Sentence denotes Fig. 4 Underprocessing of viral glycan shields.
T98 49-156 Sentence denotes From left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21).
T99 157-249 Sentence denotes Site-specific N-linked glycan oligomannose quantifications are colored according to the key.
T100 250-425 Sentence denotes All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 409-415 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T47 86-94 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T48 105-115 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
509 33-39 Chemical denotes glycan MESH:D011134
523 124-127 Gene denotes GPC Gene:2995
525 336-339 Gene denotes GPC Gene:2995
526 116-117 Gene denotes S Gene:43740568
527 69-77 Species denotes MERS-CoV Tax:1335626
529 105-115 Species denotes SARS-CoV-2 Tax:2697049
531 119-123 Species denotes LASV Tax:11620
532 331-335 Species denotes LASV Tax:11620
533 171-186 Chemical denotes N-linked glycan
534 187-199 Chemical denotes oligomannose
535 305-313 CellLine denotes HEK 293F CVCL:6642

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2359 124-127 Protein denotes GPC https://www.uniprot.org/uniprot/P03711
T2360 144-147 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3
T2361 254-267 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2446 305-308 Protein denotes HEK https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320
T2449 336-339 Protein denotes GPC https://www.uniprot.org/uniprot/P03711

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T5 409-415 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T83 250-253 https://glytoucan.org/Structures/Glycans/G05518TD denotes All

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T97 0-48 Sentence denotes Fig. 4 Underprocessing of viral glycan shields.
T98 49-156 Sentence denotes From left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21).
T99 157-249 Sentence denotes Site-specific N-linked glycan oligomannose quantifications are colored according to the key.
T100 250-425 Sentence denotes All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
509 33-39 Chemical denotes glycan MESH:D011134
523 124-127 Gene denotes GPC Gene:2995
524 144-147 Gene denotes Env Gene:100616444
525 336-339 Gene denotes GPC Gene:2995
526 116-117 Gene denotes S Gene:43740568
527 69-77 Species denotes MERS-CoV Tax:1335626
528 86-94 Species denotes SARS-CoV Tax:694009
529 105-115 Species denotes SARS-CoV-2 Tax:2697049
530 138-143 Species denotes HIV-1 Tax:11676
531 119-123 Species denotes LASV Tax:11620
532 331-335 Species denotes LASV Tax:11620
533 171-186 Chemical denotes N-linked glycan
534 187-199 Chemical denotes oligomannose
535 305-313 CellLine denotes HEK 293F CVCL:6642