PMC:7199903 / 12727-13290 JSONTXT

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    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T64","span":{"begin":101,"end":114},"obj":"Body_part"},{"id":"T65","span":{"begin":145,"end":158},"obj":"Body_part"},{"id":"T66","span":{"begin":222,"end":230},"obj":"Body_part"},{"id":"T67","span":{"begin":234,"end":237},"obj":"Body_part"},{"id":"T68","span":{"begin":337,"end":344},"obj":"Body_part"},{"id":"T69","span":{"begin":443,"end":456},"obj":"Body_part"},{"id":"T70","span":{"begin":468,"end":471},"obj":"Body_part"}],"attributes":[{"id":"A64","pred":"fma_id","subj":"T64","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A65","pred":"fma_id","subj":"T65","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A66","pred":"fma_id","subj":"T66","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A67","pred":"fma_id","subj":"T67","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A68","pred":"fma_id","subj":"T68","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A69","pred":"fma_id","subj":"T69","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A70","pred":"fma_id","subj":"T70","obj":"http://purl.org/sig/ont/fma/fma278683"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T48","span":{"begin":324,"end":332},"obj":"Disease"}],"attributes":[{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T74","span":{"begin":58,"end":60},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T75","span":{"begin":58,"end":60},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T76","span":{"begin":296,"end":298},"obj":"http://purl.obolibrary.org/obo/CLO_0001302"},{"id":"T77","span":{"begin":408,"end":409},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T125","span":{"begin":58,"end":60},"obj":"Chemical"},{"id":"T126","span":{"begin":101,"end":114},"obj":"Chemical"},{"id":"T127","span":{"begin":145,"end":158},"obj":"Chemical"},{"id":"T128","span":{"begin":222,"end":230},"obj":"Chemical"},{"id":"T129","span":{"begin":283,"end":290},"obj":"Chemical"},{"id":"T130","span":{"begin":337,"end":344},"obj":"Chemical"},{"id":"T131","span":{"begin":387,"end":394},"obj":"Chemical"},{"id":"T132","span":{"begin":443,"end":456},"obj":"Chemical"}],"attributes":[{"id":"A125","pred":"chebi_id","subj":"T125","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A126","pred":"chebi_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A127","pred":"chebi_id","subj":"T127","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A128","pred":"chebi_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A129","pred":"chebi_id","subj":"T129","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A130","pred":"chebi_id","subj":"T130","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A131","pred":"chebi_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A132","pred":"chebi_id","subj":"T132","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-PD-IDO

    {"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T61","span":{"begin":96,"end":100},"obj":"http://purl.obolibrary.org/obo/IDO_0000531"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-Enju

    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the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-PD-FMA

    {"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T63","span":{"begin":101,"end":114},"obj":"Body_part"},{"id":"T64","span":{"begin":145,"end":158},"obj":"Body_part"},{"id":"T65","span":{"begin":222,"end":230},"obj":"Body_part"},{"id":"T66","span":{"begin":234,"end":237},"obj":"Body_part"},{"id":"T67","span":{"begin":337,"end":344},"obj":"Body_part"},{"id":"T68","span":{"begin":443,"end":456},"obj":"Body_part"},{"id":"T69","span":{"begin":468,"end":471},"obj":"Body_part"}],"attributes":[{"id":"A67","pred":"fma_id","subj":"T67","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A68","pred":"fma_id","subj":"T68","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A63","pred":"fma_id","subj":"T63","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A65","pred":"fma_id","subj":"T65","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A69","pred":"fma_id","subj":"T69","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A66","pred":"fma_id","subj":"T66","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A64","pred":"fma_id","subj":"T64","obj":"http://purl.org/sig/ont/fma/fma62925"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-CHEBI

    {"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T95","span":{"begin":101,"end":114},"obj":"Chemical"},{"id":"T96","span":{"begin":145,"end":158},"obj":"Chemical"},{"id":"T97","span":{"begin":222,"end":230},"obj":"Chemical"},{"id":"T98","span":{"begin":283,"end":290},"obj":"Chemical"},{"id":"T99","span":{"begin":337,"end":344},"obj":"Chemical"},{"id":"T100","span":{"begin":387,"end":394},"obj":"Chemical"},{"id":"T101","span":{"begin":443,"end":456},"obj":"Chemical"}],"attributes":[{"id":"A98","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A101","pred":"chebi_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A100","pred":"chebi_id","subj":"T100","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A99","pred":"chebi_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A97","pred":"chebi_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A95","pred":"chebi_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A96","pred":"chebi_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-PD-NCBITaxon

    {"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T49","span":{"begin":234,"end":239},"obj":"Species"},{"id":"T50","span":{"begin":324,"end":334},"obj":"Species"},{"id":"T51","span":{"begin":468,"end":473},"obj":"Species"},{"id":"T52","span":{"begin":482,"end":486},"obj":"Species"}],"attributes":[{"id":"A52","pred":"ncbi_taxonomy_id","subj":"T52","obj":"NCBItxid:11620"},{"id":"A50","pred":"ncbi_taxonomy_id","subj":"T50","obj":"NCBItxid:2697049"},{"id":"A49","pred":"ncbi_taxonomy_id","subj":"T49","obj":"NCBItxid:11676"},{"id":"A51","pred":"ncbi_taxonomy_id","subj":"T51","obj":"NCBItxid:11676"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-sentences

    {"project":"LitCovid-sample-sentences","denotations":[{"id":"T85","span":{"begin":0,"end":159},"obj":"Sentence"},{"id":"T86","span":{"begin":160,"end":300},"obj":"Sentence"},{"id":"T87","span":{"begin":301,"end":563},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-PD-MONDO

    {"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T42","span":{"begin":324,"end":334},"obj":"Disease"}],"attributes":[{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-Pubtator

    {"project":"LitCovid-sample-Pubtator","denotations":[{"id":"424","span":{"begin":216,"end":221},"obj":"Gene"},{"id":"425","span":{"begin":240,"end":243},"obj":"Gene"},{"id":"426","span":{"begin":474,"end":477},"obj":"Gene"},{"id":"427","span":{"begin":487,"end":490},"obj":"Gene"},{"id":"428","span":{"begin":335,"end":344},"obj":"Gene"},{"id":"429","span":{"begin":234,"end":239},"obj":"Species"},{"id":"430","span":{"begin":324,"end":334},"obj":"Species"},{"id":"431","span":{"begin":468,"end":473},"obj":"Species"},{"id":"432","span":{"begin":482,"end":486},"obj":"Species"},{"id":"433","span":{"begin":12,"end":24},"obj":"Chemical"},{"id":"434","span":{"begin":30,"end":36},"obj":"Chemical"},{"id":"435","span":{"begin":265,"end":277},"obj":"Chemical"},{"id":"436","span":{"begin":283,"end":290},"obj":"Chemical"},{"id":"437","span":{"begin":387,"end":394},"obj":"Chemical"}],"attributes":[{"id":"A426","pred":"pubann:denotes","subj":"426","obj":"Gene:100616444"},{"id":"A431","pred":"pubann:denotes","subj":"431","obj":"Tax:11676"},{"id":"A432","pred":"pubann:denotes","subj":"432","obj":"Tax:11620"},{"id":"A436","pred":"pubann:denotes","subj":"436","obj":"MESH:D011134"},{"id":"A424","pred":"pubann:denotes","subj":"424","obj":"Gene:43740568"},{"id":"A430","pred":"pubann:denotes","subj":"430","obj":"Tax:2697049"},{"id":"A437","pred":"pubann:denotes","subj":"437","obj":"MESH:D011134"},{"id":"A428","pred":"pubann:denotes","subj":"428","obj":"Gene:43740568"},{"id":"A427","pred":"pubann:denotes","subj":"427","obj":"Gene:2995"},{"id":"A425","pred":"pubann:denotes","subj":"425","obj":"Gene:100616444"},{"id":"A434","pred":"pubann:denotes","subj":"434","obj":"MESH:D011134"},{"id":"A429","pred":"pubann:denotes","subj":"429","obj":"Tax:11676"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sample-UniProt

    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the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T85","span":{"begin":0,"end":159},"obj":"Sentence"},{"id":"T86","span":{"begin":160,"end":300},"obj":"Sentence"},{"id":"T87","span":{"begin":301,"end":563},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"424","span":{"begin":216,"end":221},"obj":"Gene"},{"id":"425","span":{"begin":240,"end":243},"obj":"Gene"},{"id":"426","span":{"begin":474,"end":477},"obj":"Gene"},{"id":"427","span":{"begin":487,"end":490},"obj":"Gene"},{"id":"428","span":{"begin":335,"end":344},"obj":"Gene"},{"id":"429","span":{"begin":234,"end":239},"obj":"Species"},{"id":"430","span":{"begin":324,"end":334},"obj":"Species"},{"id":"431","span":{"begin":468,"end":473},"obj":"Species"},{"id":"432","span":{"begin":482,"end":486},"obj":"Species"},{"id":"433","span":{"begin":12,"end":24},"obj":"Chemical"},{"id":"434","span":{"begin":30,"end":36},"obj":"Chemical"},{"id":"435","span":{"begin":265,"end":277},"obj":"Chemical"},{"id":"436","span":{"begin":283,"end":290},"obj":"Chemical"},{"id":"437","span":{"begin":387,"end":394},"obj":"Chemical"}],"attributes":[{"id":"A424","pred":"tao:has_database_id","subj":"424","obj":"Gene:43740568"},{"id":"A425","pred":"tao:has_database_id","subj":"425","obj":"Gene:100616444"},{"id":"A426","pred":"tao:has_database_id","subj":"426","obj":"Gene:100616444"},{"id":"A427","pred":"tao:has_database_id","subj":"427","obj":"Gene:2995"},{"id":"A428","pred":"tao:has_database_id","subj":"428","obj":"Gene:43740568"},{"id":"A429","pred":"tao:has_database_id","subj":"429","obj":"Tax:11676"},{"id":"A430","pred":"tao:has_database_id","subj":"430","obj":"Tax:2697049"},{"id":"A431","pred":"tao:has_database_id","subj":"431","obj":"Tax:11676"},{"id":"A432","pred":"tao:has_database_id","subj":"432","obj":"Tax:11620"},{"id":"A434","pred":"tao:has_database_id","subj":"434","obj":"MESH:D011134"},{"id":"A436","pred":"tao:has_database_id","subj":"436","obj":"MESH:D011134"},{"id":"A437","pred":"tao:has_database_id","subj":"437","obj":"MESH:D011134"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies."}