PMC:7199903 / 12727-13290
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T64 | 101-114 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T65 | 145-158 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T66 | 222-230 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T67 | 234-237 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
T68 | 337-344 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T69 | 443-456 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T70 | 468-471 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T48 | 324-332 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T74 | 58-60 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T75 | 58-60 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T76 | 296-298 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
T77 | 408-409 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T125 | 58-60 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T126 | 101-114 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T127 | 145-158 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T128 | 222-230 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T129 | 283-290 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T130 | 337-344 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T131 | 387-394 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T132 | 443-456 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
LitCovid-sample-PD-IDO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T61 | 96-100 | http://purl.obolibrary.org/obo/IDO_0000531 | denotes | host |
LitCovid-sample-Enju
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T44252 | 0-7 | IN | denotes | Whereas |
T8171 | 8-11 | DT | denotes | the |
T39795 | 12-29 | JJ | denotes | oligomannose-type |
T73596 | 30-36 | NN | denotes | glycan |
T59365 | 37-44 | NN | denotes | content |
T99808 | 45-46 | -LRB- | denotes | ( |
T34115 | 46-48 | CD | denotes | 28 |
T21559 | 48-49 | NN | denotes | % |
T47422 | 49-50 | -RRB- | denotes | ) |
T52753 | 51-52 | -LRB- | denotes | ( |
T61056 | 52-57 | NN | denotes | table |
T40589 | 58-60 | NN | denotes | S2 |
T96095 | 60-61 | -RRB- | denotes | ) |
T22184 | 62-64 | VBZ | denotes | is |
T69759 | 65-70 | IN | denotes | above |
T22986 | 71-75 | IN | denotes | that |
T24433 | 76-84 | VBN | denotes | observed |
T62977 | 85-87 | IN | denotes | on |
T34380 | 88-95 | JJ | denotes | typical |
T20152 | 96-100 | NN | denotes | host |
T61533 | 101-114 | NNS | denotes | glycoproteins |
T13550 | 114-115 | -COMMA- | denotes | , |
T27606 | 116-118 | PRP | denotes | it |
T82381 | 119-121 | VBZ | denotes | is |
T28293 | 122-127 | JJR | denotes | lower |
T56709 | 128-132 | IN | denotes | than |
T85625 | 133-138 | JJ | denotes | other |
T35332 | 139-144 | JJ | denotes | viral |
T47969 | 145-158 | NNS | denotes | glycoproteins |
T28276 | 160-163 | IN | denotes | For |
T16362 | 164-171 | NN | denotes | example |
T16646 | 171-172 | -COMMA- | denotes | , |
T86047 | 173-176 | CD | denotes | one |
T49490 | 177-179 | IN | denotes | of |
T73507 | 180-183 | DT | denotes | the |
T59944 | 184-188 | RBS | denotes | most |
T25572 | 189-196 | RB | denotes | densely |
T28586 | 197-209 | VBN | denotes | glycosylated |
T97814 | 210-215 | JJ | denotes | viral |
T45720 | 216-221 | NN | denotes | spike |
T63316 | 222-230 | NNS | denotes | proteins |
T67493 | 231-233 | VBZ | denotes | is |
T5107 | 234-239 | NN | denotes | HIV-1 |
T33765 | 240-243 | NN | denotes | Env |
T65352 | 243-244 | -COMMA- | denotes | , |
T93662 | 245-250 | WDT | denotes | which |
T82020 | 251-259 | VBZ | denotes | exhibits |
T54543 | 260-263 | CD | denotes | ~60 |
T27723 | 263-264 | NN | denotes | % |
T66901 | 265-282 | JJ | denotes | oligomannose-type |
T75833 | 283-290 | NNS | denotes | glycans |
T67860 | 291-292 | -LRB- | denotes | ( |
T96850 | 292-294 | CD | denotes | 21 |
T16706 | 294-295 | -COMMA- | denotes | , |
T77788 | 296-298 | CD | denotes | 34 |
T37032 | 298-299 | -RRB- | denotes | ) |
T66377 | 301-305 | DT | denotes | This |
T59113 | 306-314 | VBZ | denotes | suggests |
T7350 | 315-319 | IN | denotes | that |
T84608 | 320-323 | DT | denotes | the |
T79579 | 324-334 | NN | denotes | SARS-CoV-2 |
T90817 | 335-336 | NN | denotes | S |
T46370 | 337-344 | NN | denotes | protein |
T49742 | 345-347 | VBZ | denotes | is |
T65139 | 348-352 | RBR | denotes | less |
T25953 | 353-360 | RB | denotes | densely |
T38725 | 361-373 | VBN | denotes | glycosylated |
T99018 | 374-377 | CC | denotes | and |
T61137 | 378-382 | IN | denotes | that |
T86967 | 383-386 | DT | denotes | the |
T63886 | 387-394 | NNS | denotes | glycans |
T21482 | 395-399 | VBP | denotes | form |
T93073 | 400-404 | JJR | denotes | less |
T83016 | 405-407 | IN | denotes | of |
T33280 | 408-409 | DT | denotes | a |
T85733 | 410-416 | NN | denotes | shield |
T30140 | 417-425 | VBN | denotes | compared |
T50036 | 426-430 | IN | denotes | with |
T75732 | 431-436 | JJ | denotes | other |
T97967 | 437-442 | JJ | denotes | viral |
T29563 | 443-456 | NNS | denotes | glycoproteins |
T29111 | 456-457 | -COMMA- | denotes | , |
T12944 | 458-467 | VBG | denotes | including |
T78853 | 468-473 | NN | denotes | HIV-1 |
T41077 | 474-477 | NN | denotes | Env |
T98405 | 478-481 | CC | denotes | and |
T41548 | 482-486 | NN | denotes | LASV |
T28392 | 487-490 | NN | denotes | GPC |
T20621 | 490-491 | -COMMA- | denotes | , |
T35209 | 492-497 | WDT | denotes | which |
T31115 | 498-501 | MD | denotes | may |
T83078 | 502-504 | VB | denotes | be |
T44859 | 505-515 | JJ | denotes | beneficial |
T25244 | 516-519 | IN | denotes | for |
T31092 | 520-523 | DT | denotes | the |
T2299 | 524-535 | NN | denotes | elicitation |
T33174 | 536-538 | IN | denotes | of |
T63621 | 539-551 | VBG | denotes | neutralizing |
T62387 | 552-562 | NNS | denotes | antibodies |
R15990 | T28293 | T56709 | arg1Of | lower,than |
R34637 | T47969 | T35332 | arg1Of | glycoproteins,viral |
R64838 | T67493 | T28276 | arg1Of | is,For |
R66091 | T16362 | T28276 | arg2Of | example,For |
R52990 | T67493 | T16646 | arg1Of | is,"," |
R58686 | T38725 | T25953 | arg1Of | glycosylated,densely |
R10855 | T46370 | T38725 | arg2Of | protein,glycosylated |
R56222 | T38725 | T99018 | arg1Of | glycosylated,and |
R31047 | T61137 | T99018 | arg2Of | that,and |
R94916 | T21482 | T61137 | arg2Of | form,that |
R72200 | T63886 | T86967 | arg1Of | glycans,the |
R10503 | T63886 | T21482 | arg1Of | glycans,form |
R21364 | T93073 | T21482 | arg2Of | less,form |
R17628 | T93073 | T83016 | arg1Of | less,of |
R97132 | T85733 | T83016 | arg2Of | shield,of |
R49051 | T85733 | T33280 | arg1Of | shield,a |
R98481 | T59113 | T30140 | arg1Of | suggests,compared |
R2845 | T50036 | T30140 | arg2Of | with,compared |
R89424 | T29563 | T50036 | arg2Of | glycoproteins,with |
R28363 | T29563 | T75732 | arg1Of | glycoproteins,other |
R50116 | T29563 | T97967 | arg1Of | glycoproteins,viral |
R33571 | T29563 | T29111 | arg1Of | glycoproteins,"," |
R76475 | T29563 | T12944 | arg1Of | glycoproteins,including |
R26595 | T98405 | T12944 | arg2Of | and,including |
R51875 | T41077 | T78853 | arg1Of | Env,HIV-1 |
R43307 | T41077 | T98405 | arg1Of | Env,and |
R55823 | T28392 | T98405 | arg2Of | GPC,and |
R89854 | T98405 | T83078 | arg1Of | and,be |
R63894 | T44859 | T83078 | arg2Of | beneficial,be |
R45773 | T98405 | T44859 | arg1Of | and,beneficial |
R60934 | T44859 | T25244 | arg1Of | beneficial,for |
R4957 | T2299 | T25244 | arg2Of | elicitation,for |
R85283 | T2299 | T31092 | arg1Of | elicitation,the |
R8540 | T2299 | T33174 | arg1Of | elicitation,of |
R7869 | T62387 | T33174 | arg2Of | antibodies,of |
R25417 | T82381 | T44252 | arg1Of | is,Whereas |
R90386 | T24433 | T44252 | arg2Of | observed,Whereas |
R19591 | T59365 | T8171 | arg1Of | content,the |
R3623 | T59365 | T39795 | arg1Of | content,oligomannose-type |
R81204 | T59365 | T73596 | arg1Of | content,glycan |
R9156 | T59365 | T99808 | arg1Of | content,( |
R21487 | T21559 | T99808 | arg2Of | %,( |
R14261 | T47422 | T99808 | arg3Of | ),( |
R89185 | T21559 | T34115 | arg1Of | %,28 |
R42702 | T59365 | T52753 | arg1Of | content,( |
R72847 | T40589 | T52753 | arg2Of | S2,( |
R56034 | T96095 | T52753 | arg3Of | ),( |
R42369 | T40589 | T61056 | arg1Of | S2,table |
R37966 | T59365 | T22184 | arg1Of | content,is |
R13700 | T24433 | T22184 | arg2Of | observed,is |
R27773 | T24433 | T69759 | arg1Of | observed,above |
R14393 | T22986 | T69759 | arg2Of | that,above |
R73912 | T59365 | T24433 | arg2Of | content,observed |
R5446 | T24433 | T62977 | arg1Of | observed,on |
R10257 | T61533 | T62977 | arg2Of | glycoproteins,on |
R61739 | T61533 | T34380 | arg1Of | glycoproteins,typical |
R24004 | T61533 | T20152 | arg1Of | glycoproteins,host |
R53423 | T82381 | T13550 | arg1Of | is,"," |
R99198 | T27606 | T82381 | arg1Of | it,is |
R89867 | T28293 | T82381 | arg2Of | lower,is |
R33343 | T27606 | T28293 | arg1Of | it,lower |
R14368 | T47969 | T56709 | arg2Of | glycoproteins,than |
R4148 | T47969 | T85625 | arg1Of | glycoproteins,other |
R79975 | T86047 | T49490 | arg1Of | one,of |
R17404 | T63316 | T49490 | arg2Of | proteins,of |
R43321 | T63316 | T73507 | arg1Of | proteins,the |
R88890 | T25572 | T59944 | arg1Of | densely,most |
R11827 | T28586 | T25572 | arg1Of | glycosylated,densely |
R17573 | T63316 | T28586 | arg1Of | proteins,glycosylated |
R17686 | T63316 | T97814 | arg1Of | proteins,viral |
R66791 | T63316 | T45720 | arg1Of | proteins,spike |
R58603 | T86047 | T67493 | arg1Of | one,is |
R25150 | T33765 | T67493 | arg2Of | Env,is |
R34663 | T33765 | T5107 | arg1Of | Env,HIV-1 |
R52209 | T33765 | T65352 | arg1Of | Env,"," |
R33489 | T33765 | T93662 | arg1Of | Env,which |
R86704 | T33765 | T82020 | arg1Of | Env,exhibits |
R7415 | T75833 | T82020 | arg2Of | glycans,exhibits |
R41910 | T75833 | T54543 | arg1Of | glycans,~60 |
R72236 | T54543 | T27723 | arg1Of | ~60,% |
R69478 | T75833 | T66901 | arg1Of | glycans,oligomannose-type |
R80841 | T75833 | T67860 | arg1Of | glycans,( |
R32128 | T96850 | T67860 | arg2Of | 21,( |
R2357 | T37032 | T67860 | arg3Of | ),( |
R64521 | T96850 | T16706 | arg1Of | 21,"," |
R19069 | T77788 | T16706 | arg2Of | 34,"," |
R76881 | T66377 | T59113 | arg1Of | This,suggests |
R86709 | T99018 | T59113 | arg2Of | and,suggests |
R56244 | T38725 | T7350 | arg1Of | glycosylated,that |
R79137 | T46370 | T84608 | arg1Of | protein,the |
R86337 | T46370 | T79579 | arg1Of | protein,SARS-CoV-2 |
R72516 | T46370 | T90817 | arg1Of | protein,S |
R75177 | T46370 | T49742 | arg1Of | protein,is |
R34491 | T38725 | T49742 | arg2Of | glycosylated,is |
R50234 | T25953 | T65139 | arg1Of | densely,less |
R21636 | T28392 | T41548 | arg1Of | GPC,LASV |
R78032 | T98405 | T20621 | arg1Of | and,"," |
R79430 | T98405 | T35209 | arg1Of | and,which |
R55420 | T98405 | T31115 | arg1Of | and,may |
R38136 | T83078 | T31115 | arg2Of | be,may |
R19015 | T62387 | T63621 | arg1Of | antibodies,neutralizing |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T63 | 101-114 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T64 | 145-158 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T65 | 222-230 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T66 | 234-237 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
T67 | 337-344 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T68 | 443-456 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T69 | 468-471 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T95 | 101-114 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T96 | 145-158 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T97 | 222-230 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T98 | 283-290 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T99 | 337-344 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T100 | 387-394 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T101 | 443-456 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T49 | 234-239 | Species | denotes | HIV-1 | NCBItxid:11676 |
T50 | 324-334 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
T51 | 468-473 | Species | denotes | HIV-1 | NCBItxid:11676 |
T52 | 482-486 | Species | denotes | LASV | NCBItxid:11620 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T85 | 0-159 | Sentence | denotes | Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. |
T86 | 160-300 | Sentence | denotes | For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). |
T87 | 301-563 | Sentence | denotes | This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies. |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T42 | 324-334 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
424 | 216-221 | Gene | denotes | spike | Gene:43740568 |
425 | 240-243 | Gene | denotes | Env | Gene:100616444 |
426 | 474-477 | Gene | denotes | Env | Gene:100616444 |
427 | 487-490 | Gene | denotes | GPC | Gene:2995 |
428 | 335-344 | Gene | denotes | S protein | Gene:43740568 |
429 | 234-239 | Species | denotes | HIV-1 | Tax:11676 |
430 | 324-334 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
431 | 468-473 | Species | denotes | HIV-1 | Tax:11676 |
432 | 482-486 | Species | denotes | LASV | Tax:11620 |
433 | 12-24 | Chemical | denotes | oligomannose | |
434 | 30-36 | Chemical | denotes | glycan | MESH:D011134 |
435 | 265-277 | Chemical | denotes | oligomannose | |
436 | 283-290 | Chemical | denotes | glycans | MESH:D011134 |
437 | 387-394 | Chemical | denotes | glycans | MESH:D011134 |
LitCovid-sample-UniProt
Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
---|---|---|---|---|---|
T2031 | 101-114 | Protein | denotes | glycoproteins | https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8 |
T2116 | 145-158 | Protein | denotes | glycoproteins | https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8 |
T2201 | 216-230 | Protein | denotes | spike proteins | https://www.uniprot.org/uniprot/P31340 |
T2202 | 240-243 | Protein | denotes | Env | https://www.uniprot.org/uniprot/C1JJY3 |
T2203 | 335-344 | Protein | denotes | S protein | https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9 |
T2236 | 443-456 | Protein | denotes | glycoproteins | https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8 |
T2321 | 474-477 | Protein | denotes | Env | https://www.uniprot.org/uniprot/C1JJY3 |
T2322 | 487-490 | Protein | denotes | GPC | https://www.uniprot.org/uniprot/P03711 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T85 | 0-159 | Sentence | denotes | Whereas the oligomannose-type glycan content (28%) (table S2) is above that observed on typical host glycoproteins, it is lower than other viral glycoproteins. |
T86 | 160-300 | Sentence | denotes | For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34). |
T87 | 301-563 | Sentence | denotes | This suggests that the SARS-CoV-2 S protein is less densely glycosylated and that the glycans form less of a shield compared with other viral glycoproteins, including HIV-1 Env and LASV GPC, which may be beneficial for the elicitation of neutralizing antibodies. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
424 | 216-221 | Gene | denotes | spike | Gene:43740568 |
425 | 240-243 | Gene | denotes | Env | Gene:100616444 |
426 | 474-477 | Gene | denotes | Env | Gene:100616444 |
427 | 487-490 | Gene | denotes | GPC | Gene:2995 |
428 | 335-344 | Gene | denotes | S protein | Gene:43740568 |
429 | 234-239 | Species | denotes | HIV-1 | Tax:11676 |
430 | 324-334 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
431 | 468-473 | Species | denotes | HIV-1 | Tax:11676 |
432 | 482-486 | Species | denotes | LASV | Tax:11620 |
433 | 12-24 | Chemical | denotes | oligomannose | |
434 | 30-36 | Chemical | denotes | glycan | MESH:D011134 |
435 | 265-277 | Chemical | denotes | oligomannose | |
436 | 283-290 | Chemical | denotes | glycans | MESH:D011134 |
437 | 387-394 | Chemical | denotes | glycans | MESH:D011134 |