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PMC:7199903 / 11999-12196 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T61 35-48 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T62 111-114 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T119 35-48 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T120 146-153 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T58933 0-4 DT denotes This
T8349 5-7 VBZ denotes is
T32961 8-10 IN denotes in
T11374 11-19 NN denotes contrast
T37781 20-22 TO denotes to
T38653 23-28 JJ denotes other
T19871 29-34 JJ denotes viral
T18452 35-48 NNS denotes glycoproteins
T63829 48-49 -SEMICOLON- denotes ;
T81382 50-53 IN denotes for
T81639 54-61 NN denotes example
T68824 61-62 -COMMA- denotes ,
T74600 63-66 DT denotes the
T75459 67-72 JJ denotes dense
T89951 73-79 NN denotes glycan
T85605 80-88 NNS denotes clusters
T15079 89-91 IN denotes in
T84691 92-99 JJ denotes several
T80203 100-107 NNS denotes strains
T42509 108-110 IN denotes of
T9223 111-116 NN denotes HIV-1
T85904 117-120 NNP denotes Env
T39591 121-127 VBP denotes induce
T34970 128-145 JJ denotes oligomannose-type
T30840 146-153 NNS denotes glycans
T45153 154-158 WDT denotes that
T63554 159-162 VBP denotes are
T4647 163-173 VBN denotes recognized
T39962 174-176 IN denotes by
T85483 177-187 NNS denotes antibodies
T24812 188-189 -LRB- denotes (
T57703 189-191 CD denotes 32
T38925 191-192 -COMMA- denotes ,
T19195 193-195 CD denotes 33
T95768 195-196 -RRB- denotes )
R46537 T58933 T8349 arg1Of This,is
R48711 T32961 T8349 arg2Of in,is
R20789 T58933 T32961 arg1Of This,in
R72575 T11374 T32961 arg2Of contrast,in
R96248 T11374 T37781 arg1Of contrast,to
R33831 T18452 T37781 arg2Of glycoproteins,to
R37175 T18452 T38653 arg1Of glycoproteins,other
R34546 T18452 T19871 arg1Of glycoproteins,viral
R52951 T8349 T63829 arg1Of is,;
R30337 T39591 T63829 arg2Of induce,;
R86701 T39591 T81382 arg1Of induce,for
R58257 T81639 T81382 arg2Of example,for
R33161 T39591 T68824 arg1Of induce,","
R42194 T85605 T74600 arg1Of clusters,the
R24907 T85605 T75459 arg1Of clusters,dense
R75429 T85605 T89951 arg1Of clusters,glycan
R23628 T85605 T15079 arg1Of clusters,in
R65174 T80203 T15079 arg2Of strains,in
R87354 T80203 T84691 arg1Of strains,several
R47236 T80203 T42509 arg1Of strains,of
R66332 T85904 T42509 arg2Of Env,of
R87770 T85904 T9223 arg1Of Env,HIV-1
R70404 T85605 T39591 arg1Of clusters,induce
R80782 T30840 T39591 arg2Of glycans,induce
R15402 T30840 T34970 arg1Of glycans,oligomannose-type
R73524 T30840 T45153 arg1Of glycans,that
R82531 T30840 T63554 arg1Of glycans,are
R24632 T4647 T63554 arg2Of recognized,are
R63517 T85483 T4647 arg1Of antibodies,recognized
R27739 T30840 T4647 arg2Of glycans,recognized
R50305 T85483 T39962 arg2Of antibodies,by
R48498 T85483 T24812 arg1Of antibodies,(
R65330 T57703 T24812 arg2Of 32,(
R81174 T95768 T24812 arg3Of ),(
R62699 T57703 T38925 arg1Of 32,","
R59274 T19195 T38925 arg2Of 33,","

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T60 35-48 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T61 111-114 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T90 35-48 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T91 146-153 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T47 111-116 Species denotes HIV-1 NCBItxid:11676

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T81 0-197 Sentence denotes This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33).

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
395 117-120 Gene denotes Env Gene:100616444
397 111-116 Species denotes HIV-1 Tax:11676
401 73-79 Chemical denotes glycan MESH:D011134
402 128-140 Chemical denotes oligomannose
403 146-153 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1945 35-48 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2030 117-120 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T81 0-197 Sentence denotes This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
395 117-120 Gene denotes Env Gene:100616444
397 111-116 Species denotes HIV-1 Tax:11676
401 73-79 Chemical denotes glycan MESH:D011134
402 128-140 Chemical denotes oligomannose
403 146-153 Chemical denotes glycans MESH:D011134