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PMC:7199903 / 119-331 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 91-98 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 46-54 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 114-123 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 58-68 http://purl.obolibrary.org/obo/CLO_0009985 denotes is focused
T2 161-164 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 165-167 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 91-98 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T2 114-123 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection
T3 182-187 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T4 199-204 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T16 4-9 JJ denotes acute
T17 10-21 JJ denotes respiratory
T18 22-30 NN denotes syndrome
T19 31-42 NN denotes coronavirus
T20 43-44 CD denotes 2
T21 45-46 -LRB- denotes (
T22 46-56 NN denotes SARS-CoV-2
T23 56-57 -RRB- denotes )
T24 58-60 VBZ denotes is
T25 61-68 VBN denotes focused
T26 69-71 IN denotes on
T27 72-75 DT denotes the
T28 76-84 JJ denotes trimeric
T29 85-90 NN denotes spike
T30 91-98 NN denotes protein
T31 99-103 WDT denotes that
T32 104-113 VBZ denotes initiates
T33 114-123 NN denotes infection
T34 125-129 DT denotes Each
T35 130-138 NN denotes protomer
T36 139-141 IN denotes in
T37 142-145 DT denotes the
T38 146-154 JJ denotes trimeric
T39 155-160 NN denotes spike
T40 161-164 VBZ denotes has
T41 165-167 CD denotes 22
T42 168-181 NN denotes glycosylation
T43 182-187 NNS denotes sites
T44 189-192 WRB denotes How
T45 193-198 DT denotes these
T46 199-204 NNS denotes sites
T47 205-208 VBP denotes are
R22 T25 T24 arg2Of focused,is
R24 T25 T26 arg1Of focused,on
R25 T30 T26 arg2Of protein,on
R26 T30 T27 arg1Of protein,the
R27 T30 T28 arg1Of protein,trimeric
R28 T30 T29 arg1Of protein,spike
R29 T30 T31 arg1Of protein,that
R14 T19 T16 arg1Of coronavirus,acute
R15 T19 T17 arg1Of coronavirus,respiratory
R16 T19 T18 arg1Of coronavirus,syndrome
R17 T19 T20 arg1Of coronavirus,2
R18 T19 T21 arg1Of coronavirus,(
R19 T22 T21 arg2Of SARS-CoV-2,(
R20 T23 T21 arg3Of ),(
R30 T30 T32 arg1Of protein,initiates
R31 T33 T32 arg2Of infection,initiates
R32 T35 T34 arg1Of protomer,Each
R33 T35 T36 arg1Of protomer,in
R34 T39 T36 arg2Of spike,in
R35 T39 T37 arg1Of spike,the
R36 T39 T38 arg1Of spike,trimeric
R37 T35 T40 arg1Of protomer,has
R38 T43 T40 arg2Of sites,has
R39 T43 T41 arg1Of sites,22
R40 T43 T42 arg1Of sites,glycosylation
R42 T46 T45 arg1Of sites,these
R43 T46 T47 arg1Of sites,are

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T2 91-98 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 91-98 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T4 46-56 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T4 125-188 Sentence denotes Each protomer in the trimeric spike has 22 glycosylation sites.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T4 46-56 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 114-123 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
17 85-90 Gene denotes spike Gene:43740568
20 46-56 Species denotes SARS-CoV-2 Tax:2697049
21 155-160 Gene denotes spike Gene:43740568
25 114-123 Disease denotes infection MESH:D007239

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2 85-98 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T1 168-181 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T1 168-181 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 168-181 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 125-188 Sentence denotes Each protomer in the trimeric spike has 22 glycosylation sites.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
17 85-90 Gene denotes spike Gene:43740568
20 46-56 Species denotes SARS-CoV-2 Tax:2697049
21 155-160 Gene denotes spike Gene:43740568
25 114-123 Disease denotes infection MESH:D007239