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PMC:7199903 / 0-249 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 72-79 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T2 210-217 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 37-45 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 55-63 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 116-163 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 116-149 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 165-173 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 233-242 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 177-187 http://purl.obolibrary.org/obo/CLO_0009985 denotes is focused

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 72-79 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T2 210-217 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T1 0-4 http://purl.obolibrary.org/obo/BFO_0000029 denotes Site
T2 233-242 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T14 112-115 IN denotes for
T15 116-122 JJ denotes severe
T16 123-128 JJ denotes acute
T17 129-140 JJ denotes respiratory
T18 141-149 NN denotes syndrome
T19 150-161 NN denotes coronavirus
T20 162-163 CD denotes 2
T21 164-165 -LRB- denotes (
T0 0-13 JJ denotes Site-specific
T1 14-20 NN denotes glycan
T2 21-29 NN denotes analysis
T3 30-32 IN denotes of
T4 33-36 DT denotes the
T5 37-47 NN denotes SARS-CoV-2
T6 48-53 NN denotes spike
T7 55-65 NN denotes SARS-CoV-2
T8 66-71 NN denotes spike
T9 72-79 NN denotes protein
T10 79-80 -COMMA- denotes ,
T11 81-91 VBD denotes elaborated
T12 92-99 NN denotes Vaccine
T13 100-111 NN denotes development
T22 165-175 NN denotes SARS-CoV-2
T23 175-176 -RRB- denotes )
T24 177-179 VBZ denotes is
T25 180-187 VBN denotes focused
T26 188-190 IN denotes on
T27 191-194 DT denotes the
T28 195-203 JJ denotes trimeric
T29 204-209 NN denotes spike
T30 210-217 NN denotes protein
T31 218-222 WDT denotes that
T32 223-232 VBZ denotes initiates
T33 233-242 NN denotes infection
T34 244-248 DT denotes Each
R0 T2 T0 arg1Of analysis,Site-specific
R1 T2 T1 arg1Of analysis,glycan
R2 T2 T3 arg1Of analysis,of
R3 T6 T3 arg2Of spike,of
R4 T6 T4 arg1Of spike,the
R5 T6 T5 arg1Of spike,SARS-CoV-2
R6 T9 T7 arg1Of protein,SARS-CoV-2
R7 T9 T8 arg1Of protein,spike
R21 T13 T24 arg1Of development,is
R22 T25 T24 arg2Of focused,is
R23 T13 T25 arg2Of development,focused
R24 T25 T26 arg1Of focused,on
R25 T30 T26 arg2Of protein,on
R26 T30 T27 arg1Of protein,the
R27 T30 T28 arg1Of protein,trimeric
R28 T30 T29 arg1Of protein,spike
R29 T30 T31 arg1Of protein,that
R8 T11 T10 arg1Of elaborated,","
R9 T9 T11 arg1Of protein,elaborated
R10 T13 T12 arg1Of development,Vaccine
R11 T13 T14 arg1Of development,for
R12 T19 T14 arg2Of coronavirus,for
R13 T19 T15 arg1Of coronavirus,severe
R14 T19 T16 arg1Of coronavirus,acute
R15 T19 T17 arg1Of coronavirus,respiratory
R16 T19 T18 arg1Of coronavirus,syndrome
R17 T19 T20 arg1Of coronavirus,2
R18 T19 T21 arg1Of coronavirus,(
R19 T22 T21 arg2Of SARS-CoV-2,(
R20 T23 T21 arg3Of ),(
R30 T30 T32 arg1Of protein,initiates
R31 T33 T32 arg2Of infection,initiates

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 72-79 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T2 210-217 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 72-79 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T2 210-217 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T1 37-47 Species denotes SARS-CoV-2 NCBItxid:2697049
T2 55-65 Species denotes SARS-CoV-2 NCBItxid:2697049
T3 116-163 Species denotes severe acute respiratory syndrome coronavirus 2 NCBItxid:2697049
T4 165-175 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T1 0-53 Sentence denotes Site-specific glycan analysis of the SARS-CoV-2 spike
T2 55-91 Sentence denotes SARS-CoV-2 spike protein, elaborated
T3 92-243 Sentence denotes Vaccine development for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on the trimeric spike protein that initiates infection.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 37-47 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T2 55-65 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T3 116-163 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 165-175 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 233-242 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
17 204-209 Gene denotes spike Gene:43740568
19 116-163 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
2 37-47 Species denotes SARS-CoV-2 Tax:2697049
20 165-175 Species denotes SARS-CoV-2 Tax:2697049
25 233-242 Disease denotes infection MESH:D007239
6 66-71 Gene denotes spike Gene:43740568
7 55-65 Species denotes SARS-CoV-2 Tax:2697049
T2 14-20 Chemical denotes glycan MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1 66-79 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340
T2 204-217 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-53 Sentence denotes Site-specific glycan analysis of the SARS-CoV-2 spike
T2 55-91 Sentence denotes SARS-CoV-2 spike protein, elaborated
T3 92-243 Sentence denotes Vaccine development for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on the trimeric spike protein that initiates infection.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 37-47 Species denotes SARS-CoV-2 Tax:2697049
3 14-20 Chemical denotes glycan MESH:D011134
6 66-71 Gene denotes spike Gene:43740568
7 55-65 Species denotes SARS-CoV-2 Tax:2697049
17 204-209 Gene denotes spike Gene:43740568
19 116-163 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
20 165-175 Species denotes SARS-CoV-2 Tax:2697049
25 233-242 Disease denotes infection MESH:D007239