PMC:7190487 / 1355-1928
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T8 | 193-197 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T9 | 480-494 | Body_part | denotes | umbilical vein | http://purl.org/sig/ont/fma/fma70317 |
T10 | 495-512 | Body_part | denotes | endothelial cells | http://purl.org/sig/ont/fma/fma66772 |
T11 | 507-512 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T12 | 542-548 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
T13 | 563-568 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 193-197 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T2 | 480-494 | Body_part | denotes | umbilical vein | http://purl.obolibrary.org/obo/UBERON_0002066 |
T3 | 490-494 | Body_part | denotes | vein | http://purl.obolibrary.org/obo/UBERON_0001638 |
T4 | 542-548 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T7 | 0-35 | Disease | denotes | Acute Respiratory Distress Syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T8 | 6-35 | Disease | denotes | Respiratory Distress Syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T9 | 37-41 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
T10 | 109-117 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T11 | 187-204 | Disease | denotes | acute lung injury | http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796 |
T13 | 198-204 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
T14 | 206-209 | Disease | denotes | ALI | http://purl.obolibrary.org/obo/MONDO_0006502 |
T15 | 225-233 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T16 | 281-284 | Disease | denotes | ALI | http://purl.obolibrary.org/obo/MONDO_0006502 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12 | 139-145 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
T13 | 193-197 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T14 | 193-197 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T15 | 242-245 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T16 | 353-356 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T17 | 474-479 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T18 | 480-494 | http://purl.obolibrary.org/obo/UBERON_0002066 | denotes | umbilical vein |
T19 | 480-494 | http://www.ebi.ac.uk/efo/EFO_0001940 | denotes | umbilical vein |
T20 | 495-512 | http://purl.obolibrary.org/obo/CL_0000115 | denotes | endothelial cells |
T21 | 514-520 | http://purl.obolibrary.org/obo/CLO_0004307 | denotes | HUVECs |
T22 | 526-531 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T23 | 532-548 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | embryonic kidney |
T24 | 549-552 | http://purl.obolibrary.org/obo/CLO_0001230 | denotes | 293 |
T25 | 549-552 | http://purl.obolibrary.org/obo/CLO_0037237 | denotes | 293 |
T26 | 549-552 | http://purl.obolibrary.org/obo/CLO_0050903 | denotes | 293 |
T27 | 549-552 | http://purl.obolibrary.org/obo/CLO_0054249 | denotes | 293 |
T28 | 549-552 | http://purl.obolibrary.org/obo/CLO_0054250 | denotes | 293 |
T29 | 549-552 | http://purl.obolibrary.org/obo/CLO_0054251 | denotes | 293 |
T30 | 549-552 | http://purl.obolibrary.org/obo/CLO_0054252 | denotes | 293 |
T31 | 563-568 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10 | 303-312 | http://purl.obolibrary.org/obo/GO_0016236 | denotes | autophagy |
T11 | 303-312 | http://purl.obolibrary.org/obo/GO_0006914 | denotes | autophagy |
T12 | 325-329 | http://purl.obolibrary.org/obo/GO_0050405 | denotes | AMPK |
T13 | 325-329 | http://purl.obolibrary.org/obo/GO_0047322 | denotes | AMPK |
T14 | 325-329 | http://purl.obolibrary.org/obo/GO_0004691 | denotes | AMPK |
T15 | 348-352 | http://purl.obolibrary.org/obo/GO_0050405 | denotes | AMPK |
T16 | 348-352 | http://purl.obolibrary.org/obo/GO_0047322 | denotes | AMPK |
T17 | 348-352 | http://purl.obolibrary.org/obo/GO_0004691 | denotes | AMPK |
T18 | 443-458 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylating |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16 | 0-122 | Sentence | denotes | Acute Respiratory Distress Syndrome (ARDS) is one of the commonest complications developing in patients with COVID-19 [6]. |
T17 | 123-238 | Sentence | denotes | There have been animal studies that have implicated ACE2 in the acute lung injury (ALI) caused due to SARS-CoV [4]. |
T18 | 239-347 | Sentence | denotes | It has been hypothesized that ACE2 causes ALI by bringing about autophagy through the AMPK/mTOR pathway [7]. |
T19 | 348-573 | Sentence | denotes | AMPK has been shown to increase the expression of ACE2 as well as to increase its stability by phosphorylating ACE2 Ser680 in human umbilical vein endothelial cells (HUVECs) and human embryonic kidney 293 (HEK293T) cells [8]. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 6-26 | Phenotype | denotes | Respiratory Distress | http://purl.obolibrary.org/obo/HP_0002098 |
T2 | 187-204 | Phenotype | denotes | acute lung injury | http://www.orpha.net/ORDO/Orphanet_178320 |
T3 | 206-209 | Phenotype | denotes | ALI | http://www.orpha.net/ORDO/Orphanet_178320 |
T4 | 281-284 | Phenotype | denotes | ALI | http://www.orpha.net/ORDO/Orphanet_178320 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32360697-31986264-25244885 | 119-120 | 31986264 | denotes | 6 |
32360697-31356776-25244886 | 344-345 | 31356776 | denotes | 7 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
78 | 175-179 | Gene | denotes | ACE2 | Gene:59272 |
79 | 269-273 | Gene | denotes | ACE2 | Gene:59272 |
80 | 325-329 | Gene | denotes | AMPK | Gene:5563 |
81 | 330-334 | Gene | denotes | mTOR | Gene:2475 |
82 | 348-352 | Gene | denotes | AMPK | Gene:5563 |
83 | 398-402 | Gene | denotes | ACE2 | Gene:59272 |
84 | 459-463 | Gene | denotes | ACE2 | Gene:59272 |
85 | 95-103 | Species | denotes | patients | Tax:9606 |
86 | 225-233 | Species | denotes | SARS-CoV | Tax:694009 |
87 | 474-479 | Species | denotes | human | Tax:9606 |
88 | 526-531 | Species | denotes | human | Tax:9606 |
89 | 464-470 | Chemical | denotes | Ser680 | |
90 | 0-35 | Disease | denotes | Acute Respiratory Distress Syndrome | MESH:D012128 |
91 | 37-41 | Disease | denotes | ARDS | MESH:D012128 |
92 | 109-117 | Disease | denotes | COVID-19 | MESH:C000657245 |
93 | 187-204 | Disease | denotes | acute lung injury | MESH:D055371 |
94 | 532-548 | Disease | denotes | embryonic kidney | MESH:D007674 |
95 | 549-562 | CellLine | denotes | 293 (HEK293T) | CVCL:0063 |