PMC:7189872 / 6153-6995 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"91","span":{"begin":660,"end":665},"obj":"Gene"},{"id":"92","span":{"begin":504,"end":508},"obj":"Gene"},{"id":"93","span":{"begin":760,"end":765},"obj":"Gene"},{"id":"95","span":{"begin":460,"end":470},"obj":"Species"},{"id":"100","span":{"begin":234,"end":250},"obj":"Gene"},{"id":"101","span":{"begin":252,"end":257},"obj":"Gene"},{"id":"102","span":{"begin":296,"end":301},"obj":"Gene"},{"id":"103","span":{"begin":80,"end":90},"obj":"Species"}],"attributes":[{"id":"A91","pred":"tao:has_database_id","subj":"91","obj":"Gene:43740569"},{"id":"A92","pred":"tao:has_database_id","subj":"92","obj":"Gene:55024"},{"id":"A93","pred":"tao:has_database_id","subj":"93","obj":"Gene:43740573"},{"id":"A95","pred":"tao:has_database_id","subj":"95","obj":"Tax:2697049"},{"id":"A100","pred":"tao:has_database_id","subj":"100","obj":"Gene:64006"},{"id":"A101","pred":"tao:has_database_id","subj":"101","obj":"Gene:43740569"},{"id":"A102","pred":"tao:has_database_id","subj":"102","obj":"Gene:43740573"},{"id":"A103","pred":"tao:has_database_id","subj":"103","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T40","span":{"begin":5,"end":12},"obj":"Body_part"},{"id":"T41","span":{"begin":216,"end":224},"obj":"Body_part"},{"id":"T42","span":{"begin":243,"end":250},"obj":"Body_part"},{"id":"T43","span":{"begin":258,"end":265},"obj":"Body_part"},{"id":"T44","span":{"begin":302,"end":309},"obj":"Body_part"},{"id":"T45","span":{"begin":324,"end":336},"obj":"Body_part"},{"id":"T46","span":{"begin":438,"end":446},"obj":"Body_part"},{"id":"T47","span":{"begin":491,"end":498},"obj":"Body_part"},{"id":"T48","span":{"begin":499,"end":503},"obj":"Body_part"},{"id":"T49","span":{"begin":523,"end":530},"obj":"Body_part"},{"id":"T50","span":{"begin":623,"end":630},"obj":"Body_part"},{"id":"T51","span":{"begin":666,"end":673},"obj":"Body_part"},{"id":"T52","span":{"begin":766,"end":773},"obj":"Body_part"},{"id":"T53","span":{"begin":812,"end":824},"obj":"Body_part"}],"attributes":[{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A42","pred":"fma_id","subj":"T42","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A43","pred":"fma_id","subj":"T43","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A44","pred":"fma_id","subj":"T44","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma62925"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T18","span":{"begin":80,"end":84},"obj":"Disease"},{"id":"T19","span":{"begin":460,"end":464},"obj":"Disease"}],"attributes":[{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T56","span":{"begin":315,"end":323},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T57","span":{"begin":410,"end":415},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T58","span":{"begin":499,"end":503},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T59","span":{"begin":803,"end":811},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T32","span":{"begin":5,"end":12},"obj":"Chemical"},{"id":"T33","span":{"begin":216,"end":224},"obj":"Chemical"},{"id":"T34","span":{"begin":243,"end":250},"obj":"Chemical"},{"id":"T35","span":{"begin":258,"end":265},"obj":"Chemical"},{"id":"T36","span":{"begin":302,"end":309},"obj":"Chemical"},{"id":"T37","span":{"begin":324,"end":336},"obj":"Chemical"},{"id":"T38","span":{"begin":438,"end":446},"obj":"Chemical"},{"id":"T39","span":{"begin":491,"end":498},"obj":"Chemical"},{"id":"T40","span":{"begin":523,"end":530},"obj":"Chemical"},{"id":"T41","span":{"begin":545,"end":547},"obj":"Chemical"},{"id":"T42","span":{"begin":623,"end":630},"obj":"Chemical"},{"id":"T43","span":{"begin":666,"end":673},"obj":"Chemical"},{"id":"T44","span":{"begin":766,"end":773},"obj":"Chemical"},{"id":"T45","span":{"begin":812,"end":824},"obj":"Chemical"}],"attributes":[{"id":"A32","pred":"chebi_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A35","pred":"chebi_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A37","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A38","pred":"chebi_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A39","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A41","pred":"chebi_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/CHEBI_74750"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A43","pred":"chebi_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A44","pred":"chebi_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A45","pred":"chebi_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"LitCovid-sentences","denotations":[{"id":"T46","span":{"begin":0,"end":202},"obj":"Sentence"},{"id":"T47","span":{"begin":203,"end":421},"obj":"Sentence"},{"id":"T48","span":{"begin":422,"end":490},"obj":"Sentence"},{"id":"T49","span":{"begin":491,"end":522},"obj":"Sentence"},{"id":"T50","span":{"begin":523,"end":603},"obj":"Sentence"},{"id":"T51","span":{"begin":604,"end":648},"obj":"Sentence"},{"id":"T52","span":{"begin":649,"end":691},"obj":"Sentence"},{"id":"T53","span":{"begin":692,"end":748},"obj":"Sentence"},{"id":"T54","span":{"begin":749,"end":791},"obj":"Sentence"},{"id":"T55","span":{"begin":792,"end":842},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T124","span":{"begin":80,"end":90},"obj":"SP_7"},{"id":"T125","span":{"begin":234,"end":242},"obj":"GO:0031975"},{"id":"T126","span":{"begin":252,"end":257},"obj":"PR:000004865"},{"id":"T127","span":{"begin":280,"end":294},"obj":"CHEBI:17089;CHEBI:17089"},{"id":"T128","span":{"begin":296,"end":301},"obj":"PR:P16320"},{"id":"T129","span":{"begin":315,"end":323},"obj":"GO:0016020"},{"id":"T130","span":{"begin":324,"end":336},"obj":"CHEBI:17089;CHEBI:17089;BV_11"},{"id":"T131","span":{"begin":410,"end":415},"obj":"NCBITaxon:10239"},{"id":"T135","span":{"begin":460,"end":470},"obj":"SP_7"},{"id":"T93584","span":{"begin":80,"end":90},"obj":"SP_7"},{"id":"T45672","span":{"begin":234,"end":242},"obj":"GO:0031975"},{"id":"T37281","span":{"begin":252,"end":257},"obj":"PR:000004865"},{"id":"T81405","span":{"begin":280,"end":294},"obj":"CHEBI:17089;CHEBI:17089"},{"id":"T95541","span":{"begin":296,"end":301},"obj":"PR:P16320"},{"id":"T76137","span":{"begin":315,"end":323},"obj":"GO:0016020"},{"id":"T816","span":{"begin":324,"end":336},"obj":"CHEBI:17089;CHEBI:17089;BV_11"},{"id":"T70255","span":{"begin":410,"end":415},"obj":"NCBITaxon:10239"},{"id":"T132","span":{"begin":460,"end":470},"obj":"SP_7"},{"id":"T133","span":{"begin":499,"end":503},"obj":"SO:0000704"},{"id":"T134","span":{"begin":812,"end":826},"obj":"BV_11;CHEBI:17089;CHEBI:17089"},{"id":"T11238","span":{"begin":812,"end":822},"obj":"SP_7"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}

{"project":"2_test","denotations":[{"id":"32352026-24167156-47638067","span":{"begin":199,"end":200},"obj":"24167156"},{"id":"32352026-16339739-47638068","span":{"begin":417,"end":419},"obj":"16339739"},{"id":"T65408","span":{"begin":199,"end":200},"obj":"24167156"},{"id":"T96450","span":{"begin":417,"end":419},"obj":"16339739"}],"text":"Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8]. The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].\nTable 1 List of proteins selected for SARS COV-2 with allergenicity.\nProtein Gene Bank accession no. Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen\nQHD43418.1 Envelop Protein 0.87 Non-Allergen\nQHD43417.1 ORF3a Protein 0.84 Non-Allergen\nQHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen\nQHD43421.1 ORF7a protein 0.80 Non-Allergen\nQHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen"}