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PMC:7189872 / 6153-6995 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
91 660-665 Gene denotes ORF3a Gene:43740569
92 504-508 Gene denotes Bank Gene:55024
93 760-765 Gene denotes ORF7a Gene:43740573
95 460-470 Species denotes SARS COV-2 Tax:2697049
100 234-250 Gene denotes envelope protein Gene:64006
101 252-257 Gene denotes ORF3a Gene:43740569
102 296-301 Gene denotes ORF7a Gene:43740573
103 80-90 Species denotes SARS-COV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T40 5-12 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 216-224 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T42 243-250 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T43 258-265 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T44 302-309 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T45 324-336 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T46 438-446 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T47 491-498 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T48 499-503 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T49 523-530 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T50 623-630 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T51 666-673 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T52 766-773 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T53 812-824 Body_part denotes Glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 80-84 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 460-464 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T56 315-323 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T57 410-415 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 499-503 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T59 803-811 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T32 5-12 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 216-224 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 243-250 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T35 258-265 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T36 302-309 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T37 324-336 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T38 438-446 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 491-498 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T40 523-530 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T41 545-547 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T42 623-630 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T43 666-673 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T44 766-773 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T45 812-824 Chemical denotes Glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T46 0-202 Sentence denotes Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8].
T47 203-421 Sentence denotes The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].
T48 422-490 Sentence denotes Table 1 List of proteins selected for SARS COV-2 with allergenicity.
T49 491-522 Sentence denotes Protein Gene Bank accession no.
T50 523-603 Sentence denotes Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen
T51 604-648 Sentence denotes QHD43418.1 Envelop Protein 0.87 Non-Allergen
T52 649-691 Sentence denotes QHD43417.1 ORF3a Protein 0.84 Non-Allergen
T53 692-748 Sentence denotes QHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen
T54 749-791 Sentence denotes QHD43421.1 ORF7a protein 0.80 Non-Allergen
T55 792-842 Sentence denotes QHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T124 80-90 SP_7 denotes SARS-COV-2
T125 234-242 GO:0031975 denotes envelope
T126 252-257 PR:000004865 denotes ORF3a
T127 280-294 CHEBI:17089;CHEBI:17089 denotes phosphoprotein
T128 296-301 PR:P16320 denotes ORF7a
T129 315-323 GO:0016020 denotes membrane
T130 324-336 CHEBI:17089;CHEBI:17089;BV_11 denotes glycoprotein
T131 410-415 NCBITaxon:10239 denotes virus
T135 460-470 SP_7 denotes SARS COV-2
T93584 80-90 SP_7 denotes SARS-COV-2
T45672 234-242 GO:0031975 denotes envelope
T37281 252-257 PR:000004865 denotes ORF3a
T81405 280-294 CHEBI:17089;CHEBI:17089 denotes phosphoprotein
T95541 296-301 PR:P16320 denotes ORF7a
T76137 315-323 GO:0016020 denotes membrane
T816 324-336 CHEBI:17089;CHEBI:17089;BV_11 denotes glycoprotein
T70255 410-415 NCBITaxon:10239 denotes virus
T132 460-470 SP_7 denotes SARS COV-2
T133 499-503 SO:0000704 denotes Gene
T134 812-826 BV_11;CHEBI:17089;CHEBI:17089 denotes Glycoprotein 0
T11238 812-822 SP_7 denotes Glycoprote

2_test

Id Subject Object Predicate Lexical cue
32352026-24167156-47638067 199-200 24167156 denotes 8
32352026-16339739-47638068 417-419 16339739 denotes 38
T65408 199-200 24167156 denotes 8
T96450 417-419 16339739 denotes 38