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PMC:7189872 / 23005-23543 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
432 350-356 Gene denotes ORF-3a Gene:43740569
433 114-119 Gene denotes spike Gene:43740568
434 361-367 Gene denotes ORF-7a Gene:43740573
435 167-175 Species denotes SARS-COV Tax:694009
436 216-226 Species denotes SARS-COV-2 Tax:2697049
437 380-390 Species denotes SARS-COV-2 Tax:2697049
440 50-58 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T214 120-127 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T215 146-153 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T216 227-235 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T217 334-342 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T218 419-423 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T219 483-491 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T36 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 167-171 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 216-220 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 380-384 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T178 3-4 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T179 417-423 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T180 534-536 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T178 120-127 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T179 132-138 Chemical denotes nucleo http://purl.obolibrary.org/obo/CHEBI_33252
T180 146-153 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T181 227-235 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T182 334-342 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T183 424-431 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T184 483-491 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T21 515-532 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T22 515-532 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T197 0-538 Sentence denotes In a similar study of the preliminary analysis of COVID-19 vaccine targets [1] the investigators tried to use the spike protein and nucleo-capsid protein sequences of SARS-COV that are homologous to some extant with SARS-COV-2 proteins to determine multiple different epitopes for Vaccine prediction, but in our study out of five two proteins namely ORF-3a and ORF-7a specific to SARS-COV-2 were found to be putative T-cell epitope determinants that create useful information; these proteins are also important for viral replication [41].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T445 50-58 SP_7 denotes COVID-19
T446 167-175 SP_10 denotes SARS-COV
T447 185-195 SO:0000853 denotes homologous
T448 216-226 SP_7 denotes SARS-COV-2
T449 268-276 BV_9 denotes epitopes
T450 350-353 SO:0000236 denotes ORF
T451 361-364 SO:0000236 denotes ORF
T452 380-390 SP_7 denotes SARS-COV-2
T453 417-423 CL:0000084 denotes T-cell
T454 424-431 BV_9 denotes epitope
T455 515-520 NCBITaxon:10239;GO:0006260 denotes viral
T456 521-532 GO:0006260 denotes replication
T44148 50-58 SP_7 denotes COVID-19
T48419 167-175 SP_10 denotes SARS-COV
T15410 185-195 SO:0000853 denotes homologous
T45966 216-226 SP_7 denotes SARS-COV-2
T91878 268-276 BV_9 denotes epitopes
T64466 350-353 SO:0000236 denotes ORF
T31987 361-364 SO:0000236 denotes ORF
T22365 380-390 SP_7 denotes SARS-COV-2
T96116 417-423 CL:0000084 denotes T-cell
T26337 424-431 BV_9 denotes epitope
T95242 515-520 NCBITaxon:10239;GO:0006260 denotes viral
T76165 521-532 GO:0006260 denotes replication

2_test

Id Subject Object Predicate Lexical cue
32352026-30822457-47638080 534-536 30822457 denotes 41
T54895 534-536 30822457 denotes 41