PMC:7189872 / 10968-11603 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7189872","sourcedb":"PMC","sourceid":"7189872","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7189872","text":"Table 3 Probable antigenic epitopes and MHC II Allele interaction based on NETMHC II PRED 3.2 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).\nNCBI-GenBank ID MHC II Allele POS Core peptide 1- LOG50K Affinity(nM) Vaxijen score Antigenicity\nQHD43417.1 – – – – – – NO INTERACTION\nQHD43418.1 – – – – – – NO INTERACTION\nQHD43419.1 HLA-DRB1*04:01 55 WLLWPVTA 0.282 2375.78 1.0631 ANTIGEN\nQHD43421.1 HLA-DRB1*01:01 74 VYQLRARSV 0.484 267.05 1.3108 ANTIGEN\nHLA-DRB1*07:01 74 VYQLRARSV 0.342 1235.08 1.3108 ANTIGEN\nQHD43423.2 – – – – – – NO INTERACTION","divisions":[{"label":"label","span":{"begin":0,"end":7}},{"label":"caption","span":{"begin":8,"end":233}},{"label":"p","span":{"begin":8,"end":233}},{"label":"tr","span":{"begin":234,"end":330}},{"label":"th","span":{"begin":234,"end":249}},{"label":"th","span":{"begin":250,"end":263}},{"label":"th","span":{"begin":264,"end":267}},{"label":"th","span":{"begin":268,"end":280}},{"label":"th","span":{"begin":281,"end":290}},{"label":"th","span":{"begin":291,"end":303}},{"label":"th","span":{"begin":304,"end":317}},{"label":"th","span":{"begin":318,"end":330}},{"label":"tr","span":{"begin":331,"end":368}},{"label":"td","span":{"begin":331,"end":341}},{"label":"td","span":{"begin":342,"end":343}},{"label":"td","span":{"begin":344,"end":345}},{"label":"td","span":{"begin":346,"end":347}},{"label":"td","span":{"begin":348,"end":349}},{"label":"td","span":{"begin":350,"end":351}},{"label":"td","span":{"begin":352,"end":353}},{"label":"td","span":{"begin":354,"end":368}},{"label":"tr","span":{"begin":369,"end":406}},{"label":"td","span":{"begin":369,"end":379}},{"label":"td","span":{"begin":380,"end":381}},{"label":"td","span":{"begin":382,"end":383}},{"label":"td","span":{"begin":384,"end":385}},{"label":"td","span":{"begin":386,"end":387}},{"label":"td","span":{"begin":388,"end":389}},{"label":"td","span":{"begin":390,"end":391}},{"label":"td","span":{"begin":392,"end":406}},{"label":"tr","span":{"begin":407,"end":473}},{"label":"td","span":{"begin":407,"end":417}},{"label":"td","span":{"begin":418,"end":432}},{"label":"td","span":{"begin":433,"end":435}},{"label":"td","span":{"begin":436,"end":444}},{"label":"td","span":{"begin":445,"end":450}},{"label":"td","span":{"begin":451,"end":458}},{"label":"td","span":{"begin":459,"end":465}},{"label":"td","span":{"begin":466,"end":473}},{"label":"tr","span":{"begin":474,"end":540}},{"label":"td","span":{"begin":474,"end":484}},{"label":"td","span":{"begin":485,"end":499}},{"label":"td","span":{"begin":500,"end":502}},{"label":"td","span":{"begin":503,"end":512}},{"label":"td","span":{"begin":513,"end":518}},{"label":"td","span":{"begin":519,"end":525}},{"label":"td","span":{"begin":526,"end":532}},{"label":"td","span":{"begin":533,"end":540}},{"label":"tr","span":{"begin":541,"end":597}},{"label":"td","span":{"begin":541,"end":555}},{"label":"td","span":{"begin":556,"end":558}},{"label":"td","span":{"begin":559,"end":568}},{"label":"td","span":{"begin":569,"end":574}},{"label":"td","span":{"begin":575,"end":582}},{"label":"td","span":{"begin":583,"end":589}},{"label":"td","span":{"begin":590,"end":597}},{"label":"td","span":{"begin":598,"end":608}},{"label":"td","span":{"begin":609,"end":610}},{"label":"td","span":{"begin":611,"end":612}},{"label":"td","span":{"begin":613,"end":614}},{"label":"td","span":{"begin":615,"end":616}},{"label":"td","span":{"begin":617,"end":618}},{"label":"td","span":{"begin":619,"end":620}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"162","span":{"begin":418,"end":426},"obj":"Gene"},{"id":"163","span":{"begin":485,"end":493},"obj":"Gene"},{"id":"164","span":{"begin":541,"end":549},"obj":"Gene"},{"id":"165","span":{"begin":250,"end":253},"obj":"Gene"},{"id":"167","span":{"begin":201,"end":204},"obj":"Gene"}],"attributes":[{"id":"A162","pred":"tao:has_database_id","subj":"162","obj":"Gene:3123"},{"id":"A163","pred":"tao:has_database_id","subj":"163","obj":"Gene:3123"},{"id":"A164","pred":"tao:has_database_id","subj":"164","obj":"Gene:3123"},{"id":"A165","pred":"tao:has_database_id","subj":"165","obj":"Gene:3107"},{"id":"A167","pred":"tao:has_database_id","subj":"167","obj":"Gene:3123"},{"subj":"162","pred":"source","obj":"LitCovid-PubTator"},{"subj":"163","pred":"source","obj":"LitCovid-PubTator"},{"subj":"164","pred":"source","obj":"LitCovid-PubTator"},{"subj":"165","pred":"source","obj":"LitCovid-PubTator"},{"subj":"167","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T90","span":{"begin":40,"end":43},"obj":"Body_part"},{"id":"T91","span":{"begin":201,"end":204},"obj":"Body_part"},{"id":"T92","span":{"begin":250,"end":253},"obj":"Body_part"},{"id":"T93","span":{"begin":418,"end":421},"obj":"Body_part"},{"id":"T94","span":{"begin":485,"end":488},"obj":"Body_part"},{"id":"T95","span":{"begin":541,"end":544},"obj":"Body_part"}],"attributes":[{"id":"A90","pred":"fma_id","subj":"T90","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A91","pred":"fma_id","subj":"T91","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A92","pred":"fma_id","subj":"T92","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A93","pred":"fma_id","subj":"T93","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A94","pred":"fma_id","subj":"T94","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A95","pred":"fma_id","subj":"T95","obj":"http://purl.org/sig/ont/fma/fma84795"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T93","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T94","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T95","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T86","span":{"begin":273,"end":280},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"attributes":[{"subj":"T86","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T76","span":{"begin":44,"end":46},"obj":"Chemical"},{"id":"T77","span":{"begin":82,"end":84},"obj":"Chemical"},{"id":"T78","span":{"begin":247,"end":249},"obj":"Chemical"},{"id":"T79","span":{"begin":254,"end":256},"obj":"Chemical"},{"id":"T80","span":{"begin":273,"end":280},"obj":"Chemical"}],"attributes":[{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A77","pred":"chebi_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A78","pred":"chebi_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A80","pred":"chebi_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"subj":"T76","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T78","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T79","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T80","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T89","span":{"begin":0,"end":233},"obj":"Sentence"},{"id":"T90","span":{"begin":234,"end":330},"obj":"Sentence"},{"id":"T91","span":{"begin":331,"end":368},"obj":"Sentence"},{"id":"T92","span":{"begin":369,"end":406},"obj":"Sentence"},{"id":"T93","span":{"begin":407,"end":473},"obj":"Sentence"},{"id":"T94","span":{"begin":474,"end":540},"obj":"Sentence"},{"id":"T95","span":{"begin":541,"end":597},"obj":"Sentence"},{"id":"T96","span":{"begin":598,"end":635},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T89","pred":"source","obj":"LitCovid-sentences"},{"subj":"T90","pred":"source","obj":"LitCovid-sentences"},{"subj":"T91","pred":"source","obj":"LitCovid-sentences"},{"subj":"T92","pred":"source","obj":"LitCovid-sentences"},{"subj":"T93","pred":"source","obj":"LitCovid-sentences"},{"subj":"T94","pred":"source","obj":"LitCovid-sentences"},{"subj":"T95","pred":"source","obj":"LitCovid-sentences"},{"subj":"T96","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T201","span":{"begin":17,"end":26},"obj":"CHEBI:59132;CHEBI:59132"},{"id":"T202","span":{"begin":27,"end":35},"obj":"BV_9"},{"id":"T203","span":{"begin":40,"end":46},"obj":"GO:0042613"},{"id":"T204","span":{"begin":47,"end":53},"obj":"SO:0001023"},{"id":"T205","span":{"begin":205,"end":211},"obj":"SO:0001023"},{"id":"T188","span":{"begin":17,"end":26},"obj":"CHEBI:59132;CHEBI:59132"},{"id":"T189","span":{"begin":27,"end":35},"obj":"BV_9"},{"id":"T190","span":{"begin":40,"end":46},"obj":"GO:0042613"},{"id":"T191","span":{"begin":47,"end":53},"obj":"SO:0001023"},{"id":"T192","span":{"begin":205,"end":211},"obj":"SO:0001023"},{"id":"T193","span":{"begin":422,"end":426},"obj":"PR:000002019"}],"attributes":[{"subj":"T201","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T202","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T203","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T204","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T205","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T188","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T189","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T190","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T191","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T192","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T193","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#a3ec93","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93bd"},{"id":"LitCovid-PD-CLO","color":"#93d7ec"},{"id":"LitCovid-PD-CHEBI","color":"#ece793"},{"id":"LitCovid-sentences","color":"#cd93ec"},{"id":"LitCovid-PMC-OGER-BB","color":"#93ecb3"}]}]}}