PMC:7189872 / 10968-11603
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 162 | 418-426 | Gene | denotes | HLA-DRB1 | Gene:3123 |
| 163 | 485-493 | Gene | denotes | HLA-DRB1 | Gene:3123 |
| 164 | 541-549 | Gene | denotes | HLA-DRB1 | Gene:3123 |
| 165 | 250-253 | Gene | denotes | MHC | Gene:3107 |
| 167 | 201-204 | Gene | denotes | HLA | Gene:3123 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T90 | 40-43 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T91 | 201-204 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T92 | 250-253 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T93 | 418-421 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T94 | 485-488 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T95 | 541-544 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T86 | 273-280 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T76 | 44-46 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T77 | 82-84 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T78 | 247-249 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T79 | 254-256 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T80 | 273-280 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T89 | 0-233 | Sentence | denotes | Table 3 Probable antigenic epitopes and MHC II Allele interaction based on NETMHC II PRED 3.2 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration). |
| T90 | 234-330 | Sentence | denotes | NCBI-GenBank ID MHC II Allele POS Core peptide 1- LOG50K Affinity(nM) Vaxijen score Antigenicity |
| T91 | 331-368 | Sentence | denotes | QHD43417.1 – – – – – – NO INTERACTION |
| T92 | 369-406 | Sentence | denotes | QHD43418.1 – – – – – – NO INTERACTION |
| T93 | 407-473 | Sentence | denotes | QHD43419.1 HLA-DRB1*04:01 55 WLLWPVTA 0.282 2375.78 1.0631 ANTIGEN |
| T94 | 474-540 | Sentence | denotes | QHD43421.1 HLA-DRB1*01:01 74 VYQLRARSV 0.484 267.05 1.3108 ANTIGEN |
| T95 | 541-597 | Sentence | denotes | HLA-DRB1*07:01 74 VYQLRARSV 0.342 1235.08 1.3108 ANTIGEN |
| T96 | 598-635 | Sentence | denotes | QHD43423.2 – – – – – – NO INTERACTION |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T201 | 17-26 | CHEBI:59132;CHEBI:59132 | denotes | antigenic |
| T202 | 27-35 | BV_9 | denotes | epitopes |
| T203 | 40-46 | GO:0042613 | denotes | MHC II |
| T204 | 47-53 | SO:0001023 | denotes | Allele |
| T205 | 205-211 | SO:0001023 | denotes | Allele |
| T188 | 17-26 | CHEBI:59132;CHEBI:59132 | denotes | antigenic |
| T189 | 27-35 | BV_9 | denotes | epitopes |
| T190 | 40-46 | GO:0042613 | denotes | MHC II |
| T191 | 47-53 | SO:0001023 | denotes | Allele |
| T192 | 205-211 | SO:0001023 | denotes | Allele |
| T193 | 422-426 | PR:000002019 | denotes | DRB1 |