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PMC:7172841 / 7018-8836 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T33 702-718 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T34 714-718 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T35 831-839 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T36 1683-1688 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T37 1758-1763 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 708-713 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T7 1683-1688 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T8 1758-1763 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T78 3-22 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T79 30-49 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T80 60-68 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 60-64 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 89-97 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 89-93 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 1597-1621 Disease denotes Type 2 diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T85 1604-1621 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T86 1683-1696 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T87 1749-1771 Disease denotes Coronary heart disease http://purl.obolibrary.org/obo/MONDO_0005010
T88 1758-1771 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T41 127-129 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T42 228-232 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T43 228-232 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T44 273-275 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T45 708-713 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T46 714-718 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T47 1683-1688 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T48 1683-1688 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T49 1683-1688 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T50 1683-1688 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T51 1721-1723 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T52 1758-1763 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T53 1758-1763 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T54 1758-1763 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T55 1758-1763 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T28 158-160 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T29 310-312 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T30 327-329 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T31 421-423 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T32 506-508 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T33 589-591 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T34 691-693 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T35 1248-1258 Chemical denotes Creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T36 1336-1345 Chemical denotes bilirubin http://purl.obolibrary.org/obo/CHEBI_16990
T37 1417-1420 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T50 0-49 Sentence denotes No respiratory failure Severe respiratory failure
T51 50-107 Sentence denotes Bacterial SARS-CoV-2 p value Bacterial SARS-CoV-2 p value
T52 108-138 Sentence denotes Number of patients 48 26 56 28
T53 139-227 Sentence denotes Age (years, mean ± SD) 74.8 ± 16.8 59.2 ± 10.3 <0.0001 74.0 ± 12.6∗ 67.8 ± 10.8# <0.0001
T54 228-302 Sentence denotes Male gender (n, %) 25 (52.1) 15 (57.7) 0.807 27 (48.2)∗ 25 (89.3)∗∗ 0.0003
T55 303-401 Sentence denotes APACHE II score (mean ± SD) 18.50 ± 8.19 5.88 ± 3.40 <0.0001 26.63 ± 8.52∗∗ 10.17 ± 3.64## <0.0001
T56 402-493 Sentence denotes SOFA score (mean ± SD) 7.87 ± 3.81 1.50 ± 0.82 <0.0001 11.46 ± 3.15∗∗ 5.71 ± 2.19## <0.0001
T57 494-576 Sentence denotes CCI (mean ± SD) 5.53 ± 2.13 2.16 ± 1.46 <0.0001 5.57 ± 2.20∗ 3.39 ± 2.16## <0.0001
T58 577-664 Sentence denotes PSI (mean ± SD) 146.5 ± 43.2 80.0 ± 30.7 <0.0001 177.4 ± 40.4∗∗∗ 121.2 ± 28.3## <0.0001
T59 665-694 Sentence denotes Laboratory values (mean ± SD)
T60 695-820 Sentence denotes  Total white blood cell count (/mm3) 13,852.7 ± 7279.3 6379.6 ± 1993.9 <0.0001 17,666.9 ± 12,799.9∗ 9447.8 ± 3308.6## <0.0001
T61 821-926 Sentence denotes  Absolute platelet count (x103 /mm3) 201.3 ± 124.8 243.8 ± 109.1 0.141 224.3 ± 111.0∗ 213.9 ± 71.8∗ 0.654
T62 927-993 Sentence denotes  INR 1.28 ± 0.64 1.11 ± 0.15 0.187 1.33 ± 0.45∗ 1.17 ± 0.20∗ 0.077
T63 994-1074 Sentence denotes  aPTT (secs) 37.19 ± 12.95 33.40 ± 6.22 0.165 38.42 ± 23.00∗ 37.52 ± 9.88∗ 0.844
T64 1075-1164 Sentence denotes  Fibrinogen (mg/dl) 475.6 ± 196.3 528.9 ± 152.5 0.234 495.3 ± 290.5∗ 693.5 ± 188.6# 0.002
T65 1165-1246 Sentence denotes  D-dimers (g/dl) 7.66 ± 13.9 2.76 ± 2.02 0.079 1.46 ± 1.62∗∗ 5.43 ± 6.41∗ <0.0001
T66 1247-1328 Sentence denotes  Creatinine (mg/dl) 1.55 ± 1.00 0.85 ± 0.19 0.001 1.71 ± 0.90∗ 1.11 ± 0.43# 0.001
T67 1329-1415 Sentence denotes  Total bilirubin (mg/dl) 1.43 ± 1.92 0.67 ± 0.50 0.052 1.17 ± 1.88∗ 0.97 ± 0.68∗ 0.588
T68 1416-1492 Sentence denotes  AST (U/l) 155.1 ± 308.1 39.9 ± 28.5 0.062 311.7 ± 748.2∗ 76.6 ± 59.2# 0.102
T69 1493-1569 Sentence denotes  ALT (U/l) 234.6 ± 764.3 40.2 ± 24.9 0.200 175.8 ± 378.0∗ 64.3 ± 62.2∗ 0.126
T70 1570-1595 Sentence denotes Main comorbidities (n, %)
T71 1596-1673 Sentence denotes  Type 2 diabetes mellitus 13 (27.1) 4 (15.4) 0.386 21 (37.5)∗ 6 (21.4)∗ 0.214
T72 1674-1747 Sentence denotes  Chronic heart failure 8 (16.7) 3 (11.5) 0.737 18 (32.1)∗ 4 (14.3)∗ 0.114
T73 1748-1818 Sentence denotes  Coronary heart disease 7 (14.6) 2 (7.7) 0.479 10 (17.9) 5 (17.9)∗ 1.0

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T36 3-22 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T37 30-49 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T38 1597-1612 Phenotype denotes Type 2 diabetes http://purl.obolibrary.org/obo/HP_0005978
T39 1675-1696 Phenotype denotes Chronic heart failure http://purl.obolibrary.org/obo/HP_0001635

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T63 30-41 UBERON:0001004 denotes respiratory
T274 20-25 UBERON:0002405;GO:0006955 denotes re Se
T275 26-37 GO:0006955 denotes ere respira
T276 43-51 CHEBI:82594;CHEBI:82594 denotes ailure B
T277 74-79 UBERON:0001977 denotes alue
T278 97-106 NCBITaxon:2 denotes -2 p valu
T279 199-215 GO:0006909 denotes ± 12.6∗ 67.8 ± 1
T280 256-266 SP_7 denotes 15 (57.7)
T281 306-311 UBERON:0002405;GO:0006955 denotes CHE I
T282 312-322 GO:0006955 denotes score (me
T283 337-345 CL:0000775 denotes ± 8.19 5
T284 387-397 SP_7 denotes 3.64## <0.
T285 437-442 UBERON:0002405;GO:0006955 denotes 1.50 
T286 443-453 GO:0006955 denotes 0.82 <0.0
T287 468-476 CL:0000576 denotes 5∗∗ 5.71
T95576 518-528 SP_7 denotes .13 2.16 ±
T289 568-573 UBERON:0002405;GO:0006955 denotes <0.0
T290 574-584 GO:0006955 denotes 01 PSI (me
T17416 943-953 SP_7 denotes 1.11 ± 0.
T36679 981-984 PR:000001004 denotes 0.
T46992 985-989 PR:000001006 denotes 0∗ 0
T27901 991-1003 CL:0000542 denotes 77  aPTT (se
T61002 1013-1017 PR:000001006 denotes ± 12
T78906 1019-1030 CL:0000542 denotes 5 33.40 ± 6
T18777 1036-1040 PR:000001483 denotes 165
T82514 1041-1045 PR:000001024 denotes 8.42
T67194 1046-1050 PR:000001006 denotes ± 23
T57852 1063-1067 PR:000001002 denotes 9.88
T74187 1068-1072 PR:000001006 denotes 0.8
T51485 1074-1086 CL:0000542 denotes  Fibrinogen
T75127 1118-1126 SP_7 denotes 52.5 0.2
T79014 1267-1275 SP_7 denotes 1.55 ± 1
T84083 1290-1293 PR:000001004 denotes 0.
T30397 1294-1298 PR:000001006 denotes 01 1
T75758 1300-1311 CL:0000542 denotes 1 ± 0.90∗ 1
T41299 1327-1332 PR:000001483 denotes 1  To
T12888 1333-1337 PR:000001006 denotes al b
T4856 1349-1353 PR:000001002 denotes /dl)
T26978 1354-1358 PR:000001006 denotes 1.43
T99843 1360-1371 CL:0000542 denotes 1.92 0.67 
T26411 1409-1414 UBERON:0002405 denotes 0.58
T52616 1415-1429 GO:0065007 denotes  AST (U/l) 15
T19523 1440-1448 SP_7 denotes 39.9 ±
T71646 1474-1477 PR:000001004 denotes 76.
T34262 1479-1483 PR:000001006 denotes ± 59
T24520 1485-1497 CL:0000542 denotes # 0.102  ALT
T18346 1507-1511 PR:000001006 denotes .6 ±
T91659 1513-1524 CL:0000542 denotes 64.3 40.2 ±
T48046 1534-1538 PR:000001483 denotes 0 17
T24770 1539-1543 PR:000001024 denotes .8 ±
T13763 1544-1548 PR:000001006 denotes 378.
T41969 1586-1591 UBERON:0002405 denotes es (n
T34348 1684-1691 NCBITaxon:10239 denotes eart fa
T64438 1724-1734 SP_7 denotes (32.1)∗ 4
T57025 1765-1768 PR:000001004 denotes ise
T64196 1769-1773 PR:000001006 denotes se 7
T43300 1775-1786 CL:0000542 denotes 14.6) 2 (7.
T63493 1807-1811 PR:000001483 denotes (17.
T53839 1812-1816 PR:000001024 denotes )∗ 1

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
222 1417-1420 Gene denotes AST Gene:26503
223 60-70 Species denotes SARS-CoV-2 Tax:2697049
224 89-99 Species denotes SARS-CoV-2 Tax:2697049
225 118-126 Species denotes patients Tax:9606
226 1248-1258 Chemical denotes Creatinine MESH:D003404
227 3-22 Disease denotes respiratory failure MESH:D012131
228 30-49 Disease denotes respiratory failure MESH:D012131
229 1604-1621 Disease denotes diabetes mellitus MESH:D003920
230 1675-1696 Disease denotes Chronic heart failure MESH:D006333
231 1749-1771 Disease denotes Coronary heart disease MESH:D003324