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PMC:7172841 / 26462-34599 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T182 72-82 Body_part denotes Antibodies http://purl.org/sig/ont/fma/fma62871
T183 220-223 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T184 480-488 Body_part denotes Antibody http://purl.org/sig/ont/fma/fma62871
T185 581-589 Body_part denotes Antibody http://purl.org/sig/ont/fma/fma62871
T186 666-674 Body_part denotes Antibody http://purl.org/sig/ont/fma/fma62871
T187 771-779 Body_part denotes Antibody http://purl.org/sig/ont/fma/fma62871
T188 852-855 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T189 864-872 Body_part denotes Monocyte http://purl.org/sig/ont/fma/fma62864
T190 1046-1054 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T191 1287-1296 Body_part denotes Glutamine http://purl.org/sig/ont/fma/fma82752
T192 1337-1347 Body_part denotes Lymphocyte http://purl.org/sig/ont/fma/fma62863
T193 1501-1506 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T194 1652-1671 Body_part denotes Lipopolysaccharides http://purl.org/sig/ont/fma/fma82785
T195 1754-1758 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T196 2614-2619 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T197 2813-2818 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T198 3027-3032 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T199 3042-3047 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T200 3156-3161 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T201 3419-3427 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T202 4355-4372 Body_part denotes White blood cells http://purl.org/sig/ont/fma/fma62852
T203 4367-4372 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T204 4463-4466 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T205 4541-4544 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T206 4553-4561 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T207 4609-4626 Body_part denotes White blood cells http://purl.org/sig/ont/fma/fma62852
T208 4621-4626 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T209 5021-5026 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T210 5144-5147 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T211 5261-5264 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T212 5287-5292 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T213 5347-5352 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T214 5601-5616 Body_part denotes red blood cells http://purl.org/sig/ont/fma/fma62845
T215 5611-5616 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T216 5632-5637 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T217 5858-5892 Body_part denotes Peripheral blood mononuclear cells http://purl.org/sig/ont/fma/fma86713
T218 5887-5892 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T219 6127-6132 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T220 6193-6202 Body_part denotes glutamine http://purl.org/sig/ont/fma/fma82752
T221 6291-6296 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T222 6414-6419 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T223 6551-6569 Body_part denotes lipopolysaccharide http://purl.org/sig/ont/fma/fma82785
T224 6677-6683 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T225 6755-6760 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T226 6831-6835 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T227 6877-6881 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T228 6902-6907 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T229 7058-7062 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T230 7188-7193 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T231 7514-7524 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T232 7525-7530 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T21 1501-1506 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 2614-2619 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 2813-2818 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 3027-3032 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T25 3042-3047 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 3156-3161 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T27 4361-4366 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T28 4615-4620 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T29 5347-5352 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T30 5605-5610 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T31 5869-5874 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T32 6291-6296 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T33 6902-6907 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T34 7188-7193 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T35 7525-7530 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T228 0-4 Disease denotes STAR http://purl.obolibrary.org/obo/MONDO_0010408
T229 885-887 Disease denotes BD http://purl.obolibrary.org/obo/MONDO_0007191
T230 966-968 Disease denotes BD http://purl.obolibrary.org/obo/MONDO_0007191
T231 2677-2685 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T232 2677-2681 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T233 3280-3289 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T234 3303-3319 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T235 3327-3338 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T236 4185-4193 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T237 4185-4189 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T238 7495-7503 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T237 464-467 http://purl.obolibrary.org/obo/CLO_0052882 denotes CD3
T238 464-467 http://purl.obolibrary.org/obo/CLO_0053434 denotes CD3
T239 473-476 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T240 565-568 http://purl.obolibrary.org/obo/CLO_0052882 denotes CD3
T241 565-568 http://purl.obolibrary.org/obo/CLO_0053434 denotes CD3
T242 574-577 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T243 644-647 http://purl.obolibrary.org/obo/CLO_0052882 denotes CD3
T244 644-647 http://purl.obolibrary.org/obo/CLO_0053434 denotes CD3
T245 754-758 http://purl.obolibrary.org/obo/CLO_0053432 denotes CD19
T246 764-767 http://purl.obolibrary.org/obo/PR_000001839 denotes CD5
T247 864-872 http://purl.obolibrary.org/obo/CL_0000576 denotes Monocyte
T248 874-878 http://purl.obolibrary.org/obo/CLO_0007180 denotes L243
T249 881-883 http://purl.obolibrary.org/obo/CLO_0008343 denotes P9
T250 928-933 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T251 939-944 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T252 1020-1028 http://purl.obolibrary.org/obo/PR_000018263 denotes Peptides
T253 1168-1169 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T254 1698-1700 http://purl.obolibrary.org/obo/CLO_0001818 denotes B5
T255 1748-1753 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T256 1794-1799 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T257 1840-1845 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T258 1876-1881 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T259 1935-1940 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T260 1990-1995 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T261 2614-2619 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T262 2614-2619 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T263 2813-2818 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T264 2828-2829 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T265 3027-3032 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T266 3042-3047 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T267 3091-3098 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T268 3156-3161 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T269 3156-3161 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T270 3297-3302 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T271 3320-3325 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T272 4361-4372 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T273 4553-4561 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T274 4604-4606 http://purl.obolibrary.org/obo/CLO_0007622 denotes Md
T275 4615-4626 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T276 4668-4671 http://purl.obolibrary.org/obo/CLO_0052882 denotes CD3
T277 4668-4671 http://purl.obolibrary.org/obo/CLO_0053434 denotes CD3
T278 4683-4686 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T279 4701-4705 http://purl.obolibrary.org/obo/CLO_0053432 denotes CD19
T280 4785-4788 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T281 4798-4801 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T282 5021-5026 http://purl.obolibrary.org/obo/GO_0005623 denotes Cells
T283 5287-5292 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T284 5341-5352 http://purl.obolibrary.org/obo/UBERON_0000178 denotes whole blood
T285 5341-5352 http://www.ebi.ac.uk/efo/EFO_0000296 denotes whole blood
T286 5389-5390 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T287 5528-5531 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T288 5601-5616 http://purl.obolibrary.org/obo/CL_0000232 denotes red blood cells
T289 5632-5637 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T290 5858-5892 http://purl.obolibrary.org/obo/CL_0000842 denotes Peripheral blood mononuclear cells
T291 5858-5892 http://purl.obolibrary.org/obo/CL_2000001 denotes Peripheral blood mononuclear cells
T292 5968-5974 http://purl.obolibrary.org/obo/CLO_0001929 denotes Berlin
T293 6075-6076 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T294 6127-6132 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T295 6334-6335 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T296 6393-6394 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T297 6414-6419 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T298 6548-6550 http://purl.obolibrary.org/obo/CLO_0001818 denotes B5
T299 6583-6585 http://purl.obolibrary.org/obo/CLO_0009141 denotes St
T300 6583-6585 http://purl.obolibrary.org/obo/CLO_0050980 denotes St
T301 6677-6683 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T302 6755-6760 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T303 6877-6881 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T304 7047-7049 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T305 7068-7070 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T306 7088-7090 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T307 7110-7112 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T308 7137-7139 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T309 7475-7480 http://purl.obolibrary.org/obo/CLO_0007225 denotes label
T310 7525-7530 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T311 7525-7530 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T312 7743-7747 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T313 7841-7845 http://purl.obolibrary.org/obo/CLO_0009141 denotes s “t
T314 7841-7845 http://purl.obolibrary.org/obo/CLO_0050980 denotes s “t
T315 7846-7850 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T316 7935-7939 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T317 8017-8021 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T166 88-92 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T167 224-226 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T168 295-297 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T171 381-385 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T172 468-472 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T173 477-479 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T176 569-573 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T177 578-580 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T180 648-652 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T181 653-655 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T182 663-665 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T185 759-763 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T186 768-770 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T189 856-858 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T190 945-947 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T192 950-952 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T195 1158-1169 Chemical denotes Brefeldin A http://purl.obolibrary.org/obo/CHEBI_48080
T196 1287-1296 Chemical denotes Glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T197 1303-1305 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T199 1306-1311 Chemical denotes HEPES http://purl.obolibrary.org/obo/CHEBI_46756
T200 1394-1403 Chemical denotes Phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26078
T202 1424-1433 Chemical denotes Magnesium http://purl.obolibrary.org/obo/CHEBI_25107
T203 1439-1446 Chemical denotes Calcium http://purl.obolibrary.org/obo/CHEBI_22984
T204 1546-1553 Chemical denotes Sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T205 1589-1601 Chemical denotes Penicillin G http://purl.obolibrary.org/obo/CHEBI_18208
T206 1589-1599 Chemical denotes Penicillin http://purl.obolibrary.org/obo/CHEBI_17334
T207 1754-1756 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T209 1846-1848 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T211 1882-1884 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T213 1941-1949 Chemical denotes Ferritin http://purl.obolibrary.org/obo/CHEBI_82594
T214 2263-2271 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T215 2460-2468 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T216 3152-3154 Chemical denotes MV http://purl.obolibrary.org/obo/CHEBI_73616
T217 3212-3214 Chemical denotes MV http://purl.obolibrary.org/obo/CHEBI_73616
T218 3397-3412 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T219 4452-4456 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T220 4467-4469 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T221 4470-4472 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T224 4545-4547 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T225 4604-4606 Chemical denotes Md http://purl.obolibrary.org/obo/CHEBI_33395
T226 4672-4676 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T227 4687-4691 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T228 4706-4710 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T229 4712-4738 Chemical denotes fluorescein isothiocyanate http://purl.obolibrary.org/obo/CHEBI_37926
T230 4712-4723 Chemical denotes fluorescein http://purl.obolibrary.org/obo/CHEBI_31624
T231 4724-4738 Chemical denotes isothiocyanate http://purl.obolibrary.org/obo/CHEBI_52221
T232 4789-4791 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T235 4802-4804 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T238 4815-4817 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T239 4825-4827 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T242 5114-5116 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T243 5248-5257 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T244 5265-5267 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T245 5379-5390 Chemical denotes brefeldin A http://purl.obolibrary.org/obo/CHEBI_48080
T246 5448-5451 Chemical denotes CO2 http://purl.obolibrary.org/obo/CHEBI_16526
T247 5532-5536 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T248 5548-5552 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T249 5671-5680 Chemical denotes Phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26078
T251 5787-5789 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T253 5792-5794 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T256 6097-6108 Chemical denotes trypan blue http://purl.obolibrary.org/obo/CHEBI_78897
T257 6191-6202 Chemical denotes L-glutamine http://purl.obolibrary.org/obo/CHEBI_18050|http://purl.obolibrary.org/obo/CHEBI_30011|http://purl.obolibrary.org/obo/CHEBI_58359
T260 6193-6202 Chemical denotes glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T261 6241-6253 Chemical denotes penicillin G http://purl.obolibrary.org/obo/CHEBI_51354
T262 6241-6251 Chemical denotes penicillin http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356
T264 6264-6272 Chemical denotes pyruvate http://purl.obolibrary.org/obo/CHEBI_15361
T265 6489-6492 Chemical denotes CO2 http://purl.obolibrary.org/obo/CHEBI_16526
T266 6551-6569 Chemical denotes lipopolysaccharide http://purl.obolibrary.org/obo/CHEBI_16412
T267 6571-6574 Chemical denotes LPS http://purl.obolibrary.org/obo/CHEBI_16412|http://purl.obolibrary.org/obo/CHEBI_52603|http://purl.obolibrary.org/obo/CHEBI_89981
T270 6831-6833 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T272 6838-6840 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T274 6844-6846 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T276 7058-7060 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T278 7079-7081 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T280 7099-7101 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T282 7475-7480 Chemical denotes label http://purl.obolibrary.org/obo/CHEBI_35209

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T33 3114-3124 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T34 5617-5622 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T188 0-12 Sentence denotes STAR★Methods
T189 14-33 Sentence denotes Key Resources Table
T190 34-71 Sentence denotes REAGENT or RESOURCE SOURCE IDENTIFIER
T191 72-82 Sentence denotes Antibodies
T192 83-151 Sentence denotes CD14-FITC (RMO52 clone) Beckman Coulter Cat#IM0645U; RRID: AB_130992
T193 152-219 Sentence denotes CD45-PC5 (J33 clone) Beckman Coulter Cat#IM2653U; RRID: AB_10641226
T194 220-289 Sentence denotes HLA-DR-RD1 (9-49 clone) Beckman Coulter Cat#6604366; RRID: AB_2832962
T195 290-375 Sentence denotes IgG1-PE isotype control (679.1Mc7 clone) Beckman Coulter Cat#A07796; RRID: AB_2832963
T196 376-463 Sentence denotes IgG1-FITC isotype control (679.1Mc7 clone) Beckman Coulter Cat#A07795; RRID: AB_2832964
T197 464-564 Sentence denotes CD3-FITC/CD4-PE Antibody Cocktail (UCHT1/13b8.2 clones) Beckman Coulter Cat#A07733; RRID: AB_2832965
T198 565-643 Sentence denotes CD3-FITC/CD8-PE Antibody Cocktail Beckman Coulter Cat#A07734; RRID: AB_2832966
T199 644-753 Sentence denotes CD3-FITC/CD(16+56)-PE Antibody Cocktail (UCHT1/3G8/N901 (NKH-1)) Beckman Coulter Cat#A07735; RRID: AB_1575965
T200 754-834 Sentence denotes CD19-FITC/CD5-PE Antibody Cocktail Beckman Coulter Cat#IM1346U; RRID: AB_2832967
T201 835-927 Sentence denotes Quantibrite Anti-HLA-DR/Anti-Monocyte (L243/MϕP9) BD Biosciences Cat#340827; RRID: AB_400137
T202 928-1008 Sentence denotes Mouse Anti-Human IL-6-PE (AS12 clone) BD Biosciences Cat#340527; RRID: AB_400442
T203 1009-1054 Sentence denotes Chemicals, Peptides, and Recombinant Proteins
T204 1055-1103 Sentence denotes VersaLyse Lysing Solution Beckman Coulter A09777
T205 1104-1144 Sentence denotes Fixative Solution Beckman Coulter A07800
T206 1145-1208 Sentence denotes eBioscience™ Brefeldin A Solution (1000x) Invitrogen 00-4506-51
T207 1209-1266 Sentence denotes IntraPrep Permeabilization Reagent Beckman Coulter A07802
T208 1267-1325 Sentence denotes RPMI 1640 W/ Stable Glutamine W/ 25 MM HEPES Biowest L0496
T209 1326-1378 Sentence denotes Lymphosep, Lymphocyte Separation Media Biowest L0560
T210 1379-1460 Sentence denotes PBS Dulbecco’s Phosphate Buffered Saline w/o Magnesium, w/o Calcium Biowest L0615
T211 1461-1534 Sentence denotes FBS Superior; standardized Fetal Bovine Serum, EU-approved Biochrom S0615
T212 1535-1588 Sentence denotes Gentamycin Sulfate BioChemica PanReac AppliChem A1492
T213 1589-1651 Sentence denotes Penicillin G Potassium Salt BioChemica PanReac AppliChem A1837
T214 1652-1720 Sentence denotes Lipopolysaccharides from Escherichia coli O55:B5 Sigma-Aldrich L2880
T215 1721-1747 Sentence denotes Critical Commercial Assays
T216 1748-1793 Sentence denotes Human IL-1β uncoated ELISA Invitrogen 88-7261
T217 1794-1839 Sentence denotes Human TNF-α uncoated ELISA Invitrogen 88-7346
T218 1840-1875 Sentence denotes Human IL-6 ELISA Invitrogen 88-7066
T219 1876-1934 Sentence denotes Human IL-17A (homodimer) uncoated ELISA Invitrogen 88-7176
T220 1935-1989 Sentence denotes Human Ferritin ELISA ORGENTEC Diagnostika GmbH ORG 5FE
T221 1990-2028 Sentence denotes Human IFN-γ ELISA Diaclone 950.000.192
T222 2029-2052 Sentence denotes Software and Algorithms
T223 2053-2110 Sentence denotes GraphPad Prism Graphpad Software https://www.graphpad.com
T224 2111-2174 Sentence denotes SPSS IBM https://www.ibm.com/analytics/spss-statistics-software
T225 2176-2197 Sentence denotes Resource Availability
T226 2199-2211 Sentence denotes Lead Contact
T227 2212-2349 Sentence denotes Further information and requests for resources and reagents should be directed to and will be fulfilled by the Lead Contact, Evangelos J.
T228 2350-2396 Sentence denotes Giamarellos-Bourboulis (egiamarel@med.uoa.gr).
T229 2398-2420 Sentence denotes Materials Availability
T230 2421-2469 Sentence denotes This study did not generate new unique reagents.
T231 2471-2497 Sentence denotes Data and Code Availability
T232 2498-2573 Sentence denotes Data of this study are available after communication with the Lead Contact.
T233 2575-2613 Sentence denotes Experimental Model and Subject Details
T234 2614-2759 Sentence denotes Blood was sampled from patients with CAP and sepsis and CAP by SARS-CoV-2 of either gender within the first 24 h of hospital admission (Table 1).
T235 2760-2971 Sentence denotes CAP was defined as the presence of new infiltrate in chest X-ray in a patient without any contact with any healthcare facility the last 90 days; sepsis was defined by the Sepsis-3 criteria (Singer et al., 2016).
T236 2972-3125 Sentence denotes COVID was diagnosed for patients with CAP confirmed by chest X-ray or chest computed tomography and positive molecular testing of respiratory secretions.
T237 3126-3255 Sentence denotes For patients who required MV, blood sampling was performed within the first 24 h from MV and results were used for this analysis.
T238 3256-3476 Sentence denotes Exclusion criteria were infection by the human immunodeficiency virus; neutropenia; and any previous intake of immunosuppressive medication (corticosteroids, anti-cytokine biologicals, and biological response modifiers).
T239 3477-3589 Sentence denotes SRF was defined as severe decrease of the respiratory ratio necessitating intubation and mechanical ventilation.
T240 3590-3864 Sentence denotes The studies were conducted under the 78/17 approval of the National Ethics Committee of Greece; the 23/12.08.2019 approval of the Ethics Committee of Sotiria Athens General Hospital; and the 26.02.2019 approval of the Ethics Committee of ATTIKON University General Hospital.
T241 3865-3982 Sentence denotes Written informed consent was provided by patients or by first-degree relatives in case of patients unable to consent.
T242 3983-4151 Sentence denotes All data of patients with bacterial CAP screened for participation in the randomized clinical trial with the acronym PROVIDE (ClinicalTrials.gov NCT03332225) were used.
T243 4152-4256 Sentence denotes All patients admitted for CAP by SARS-CoV-2 from March 3 until March 30, 2020 participated in the study.
T244 4257-4338 Sentence denotes No randomization to experimental groups was needed according to the study design.
T245 4340-4354 Sentence denotes Method Details
T246 4355-4608 Sentence denotes White blood cells were incubated for 15 min in the dark with the monoclonal antibodies anti-CD14 FITC, anti-HLA-DR-PE, anti-CD45 PC5 (Beckman Coulter, Marseille, France) and Quantibrite HLA-DR/anti-monocyte PerCP-Cy5 (Becton Dickinson, Cockeysville Md).
T247 4609-4936 Sentence denotes White blood cells were also incubated for 15 min with anti-CD3 FITC, anti-CD4 FITC and anti-CD19 FITC (fluorescein isothiocyanate, emission 525 nm, Beckman Coulter); with anti-CD4 PE, anti-CD8 PE, and anti-CD(16+56) PE (phycoerythrin, emission 575nm, Beckman Coulter); and with anti-CD45 PC5 (emission 667 nm, Beckman Coulter).
T248 4937-5020 Sentence denotes Fluorospheres (Beckman Coulter) were used for the determination of absolute counts.
T249 5021-5134 Sentence denotes Cells were analyzed after running through the CYTOMICS FC500 flow cytometer (Beckman Coulter Co, Miami, Florida).
T250 5135-5212 Sentence denotes Isotypic IgG controls stained also with anti-CD45 were used for each patient.
T251 5213-5315 Sentence denotes Results were expressed as absolute molecules of HLA-DR on CD14/CD14+CD45+ cells, percentages, and MFI.
T252 5316-5623 Sentence denotes In separate experiments, whole blood was treated with 10 μg/mL brefeldin A (Invitrogen, Carlsbad, CA, USA) for 60 min at 37°C in 5% CO2 followed by incubation in the dark for 15 min at room temperature with anti-CD4 FITC, anti-CD14 FITC (Beckman Coulter) and anti-CD45 PC5 followed by red blood cells lysis.
T253 5624-5781 Sentence denotes Stained cells were then washed with Dulbecco’s Phosphate Buffered Saline and permeabilized with the IntraPrep Parmeabilization Reagent kit (Beckman Coulter).
T254 5782-5857 Sentence denotes Anti-IL-6 PE (Beckman Coulter) was added and analyzed after flow cytometry.
T255 5858-6007 Sentence denotes Peripheral blood mononuclear cells (PBMCs) were isolated after gradient centrifugation over Ficoll (Biochrom, Berlin, Germany) for 20 min at 1,400 g.
T256 6008-6133 Sentence denotes After three washings in ice-cold PBS pH 7.2, PBMCs were counted in a Neubauer plate with trypan blue exclusion of dead cells.
T257 6134-6350 Sentence denotes They were then diluted in RPMI 1640 enriched with 2mM of L-glutamine, 500 μg/mL of gentamicin, 100 U/mL of penicillin G, 10 mM of pyruvate, 10% fetal bovine serum (Biochrom) and suspended in wells of a 96-well plate.
T258 6351-6423 Sentence denotes The final volume per well was 200 μL with a density of 2 × 106 cells/mL.
T259 6424-6514 Sentence denotes PBMCs were exposed in duplicate for 24 h or 5 days at 37°C in 5% CO2 to different stimuli:
T260 6515-6736 Sentence denotes 10 ng/mL of Escherichia coli O55:B5 lipopolysaccharide (LPS, Sigma, St. Louis, USA); 5 × 105 colony forming units of heat-killed Candida albicans; 25% of patient plasma; or 10 μg/mL of Tocilizumab (Roche, Athens, Greece).
T261 6737-6806 Sentence denotes After incubation, cells were removed and analyzed for flow cytometry.
T262 6807-6986 Sentence denotes Concentrations of TNFα, IL-1β, IL-6, IL-17A and IFNγ were measured in cell supernatants and/or serum in duplicate by an enzyme immunoassay (Invitrogen, Carlsbad, California, USA).
T263 6987-7143 Sentence denotes The lowest detections limits were as follows: for TNF-α, 40 pg/mL; for IL-1β, 10 pg/mL; for IL-6, 10 pg/mL; for IL-17A, 10 pg/mL; and for IFN-γ, 12.5 pg/mL.
T264 7144-7306 Sentence denotes Concentrations of ferritin were measured in serum by an enzyme-immunoassay (ORGENTEC Diagnostika GmbH, Mainz, Germany); the lower limit of detection was 75 ng/mL.
T265 7307-7504 Sentence denotes Six patients with immune dysregulation were treated with single intravenous infusion of 8 mg/kg of Tocilizumab (RoAcremra, Roche) based on the National Health Care off-label provision for COVID-19.
T266 7505-7590 Sentence denotes Absolute lymphocyte blood counts were compared before and after Tocilizumab infusion.
T267 7592-7631 Sentence denotes Quantification and Statistical Analysis
T268 7632-7748 Sentence denotes Qualitative data were presented as percentages and confidence intervals (CIs) and compared by the Fisher exact test.
T269 7749-7957 Sentence denotes Qualitative data were presented as mean and standard deviation and compared by the Student’ s “t-test”; they were presented as mean and standard error and compared by the Mann-Whitney U test for small groups.
T270 7958-8022 Sentence denotes Paired comparisons were done by the Wilcoxon’s rank-signed test.
T271 8023-8083 Sentence denotes Non-parametric correlations were done according to Spearman.
T272 8084-8137 Sentence denotes Any value of p below 0.05 was considered significant.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T93 2659-2665 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T94 2905-2911 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T95 2931-2937 Phenotype denotes Sepsis http://purl.obolibrary.org/obo/HP_0100806
T96 3303-3319 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T97 3327-3338 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T98 7325-7345 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T824 381-385 CHEBI:37926;CHEBI:37926 denotes FITC
T825 468-472 CHEBI:37926;CHEBI:37926 denotes FITC
T826 473-476 PR:000001004 denotes CD4
T827 480-488 GO:0042571 denotes Antibody
T828 569-573 CHEBI:37926;CHEBI:37926 denotes FITC
T829 581-589 GO:0042571 denotes Antibody
T830 648-652 CHEBI:37926;CHEBI:37926 denotes FITC
T831 666-674 GO:0042571 denotes Antibody
T832 759-763 CHEBI:37926;CHEBI:37926 denotes FITC
T833 764-767 PR:000001839 denotes CD5
T834 771-779 GO:0042571 denotes Antibody
T835 852-855 PR:000029150 denotes HLA
T836 864-872 CL:0000576 denotes Monocyte
T837 939-944 SP_6;NCBITaxon:9606 denotes Human
T838 945-949 PR:000001393 denotes IL-6
T839 1065-1071 GO:0019835 denotes Lysing
T840 1236-1251 CHEBI:33893;CHEBI:33893 denotes Reagent Beckman
T841 1337-1347 CL:0000542 denotes Lymphocyte
T842 1494-1500 NCBITaxon:27592 denotes Bovine
T843 1501-1506 UBERON:0001977 denotes Serum
T844 1546-1553 CHEBI:34674;CHEBI:34674 denotes Sulfate
T845 1677-1693 NCBITaxon:562 denotes Escherichia coli
T846 1754-1759 PR:000001136 denotes IL-1β
T847 1789-1799 SP_6 denotes 7261 Human
T848 1835-1845 SP_6 denotes 7346 Human
T849 1846-1850 PR:000001393 denotes IL-6
T850 1871-1881 SP_6 denotes 7066 Human
T851 1882-1888 PR:000001138 denotes IL-17A
T852 1930-1940 SP_6 denotes 7176 Human
T853 1996-2001 PR:000000017 denotes IFN-γ
T854 2263-2271 CHEBI:33893;CHEBI:33893 denotes reagents
T855 2460-2468 CHEBI:33893;CHEBI:33893 denotes reagents
T856 2614-2619 UBERON:0000178 denotes Blood
T857 2677-2687 SP_7 denotes SARS-CoV-2
T858 2813-2818 UBERON:0001443 denotes chest
T859 3027-3032 UBERON:0001443 denotes chest
T860 3042-3047 UBERON:0001443 denotes chest
T861 3102-3113 UBERON:0001004 denotes respiratory
T862 3156-3161 UBERON:0000178 denotes blood
T863 3297-3302 SP_6;NCBITaxon:9606 denotes human
T864 3320-3325 NCBITaxon:10239 denotes virus
T865 3357-3363 GO:0007631 denotes intake
T866 3367-3384 CHEBI:35705;CHEBI:35705 denotes immunosuppressive
T867 3397-3412 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T868 3519-3530 UBERON:0001004 denotes respiratory
T869 4009-4018 NCBITaxon:2 denotes bacterial
T870 4185-4195 SP_7 denotes SARS-CoV-2
T871 4355-4360 CL:0000738 denotes White
T872 4361-4366 CL:0000738;UBERON:0000178 denotes blood
T873 4367-4372 CL:0000738 denotes cells
T874 4431-4441 GO:0042571 denotes antibodies
T875 4447-4451 PR:000001889 denotes CD14
T876 4452-4456 CHEBI:37926;CHEBI:37926 denotes FITC
T877 4463-4466 PR:000029150 denotes HLA
T878 4479-4483 PR:000001006 denotes CD45
T879 4541-4544 PR:000029150 denotes HLA
T880 4553-4561 CL:0000576 denotes monocyte
T881 4568-4571 CHEBI:37989;CHEBI:37989 denotes Cy5
T882 4609-4614 CL:0000738 denotes White
T883 4615-4620 CL:0000738;UBERON:0000178 denotes blood
T884 4621-4626 CL:0000738 denotes cells
T885 4672-4676 CHEBI:37926;CHEBI:37926 denotes FITC
T886 4683-4686 PR:000001004 denotes CD4
T887 4687-4691 CHEBI:37926;CHEBI:37926 denotes FITC
T888 4701-4705 PR:000001002 denotes CD19
T889 4706-4710 CHEBI:37926;CHEBI:37926 denotes FITC
T890 4712-4738 CHEBI:37926;CHEBI:37926 denotes fluorescein isothiocyanate
T891 4785-4788 PR:000001004 denotes CD4
T892 4892-4896 PR:000001006 denotes CD45
T893 4897-4900 PR:000012437 denotes PC5
T894 4937-4950 CHEBI:51217;CHEBI:51217 denotes Fluorospheres
T895 5144-5147 GO:0071735 denotes IgG
T896 5180-5184 PR:000001006 denotes CD45
T897 5248-5257 CHEBI:36357;CHEBI:36357 denotes molecules
T898 5261-5264 PR:000029150 denotes HLA
T899 5271-5275 PR:000001889 denotes CD14
T900 5276-5280 PR:000001889 denotes CD14
T901 5281-5285 PR:000001006 denotes CD45
T902 5347-5352 UBERON:0000178 denotes blood
T903 5379-5390 CHEBI:48080;CHEBI:48080 denotes brefeldin A
T904 5448-5451 CHEBI:16526;CHEBI:16526 denotes CO2
T905 5528-5531 PR:000001004 denotes CD4
T906 5532-5536 CHEBI:37926;CHEBI:37926 denotes FITC
T907 5543-5547 PR:000001889 denotes CD14
T908 5548-5552 CHEBI:37926;CHEBI:37926 denotes FITC
T909 5580-5584 PR:000001006 denotes CD45
T910 5585-5588 PR:000012437 denotes PC5
T911 5601-5604 CL:0000232 denotes red
T912 5605-5610 CL:0000232;UBERON:0000178 denotes blood
T913 5611-5616 CL:0000232;GO:0019835 denotes cells
T914 5617-5622 GO:0019835 denotes lysis
T915 5751-5758 CHEBI:33893;CHEBI:33893 denotes Reagent
T916 5787-5791 PR:000001393 denotes IL-6
T917 5869-5874 UBERON:0000178;CL:0000842 denotes blood
T918 5875-5886 CL:0000842;GO:0005634 denotes mononuclear
T919 5887-5892 CL:0000842 denotes cells
T920 6241-6251 CHEBI:17334;CHEBI:17334 denotes penicillin
T921 6264-6272 CHEBI:15361;CHEBI:15361 denotes pyruvate
T922 6284-6290 NCBITaxon:27592 denotes bovine
T923 6291-6296 UBERON:0001977 denotes serum
T924 6489-6492 CHEBI:16526;CHEBI:16526 denotes CO2
T925 6527-6543 NCBITaxon:562 denotes Escherichia coli
T926 6551-6569 CHEBI:16412;CHEBI:16412 denotes lipopolysaccharide
T927 6571-6574 CHEBI:16412;CHEBI:16412 denotes LPS
T928 6644-6651 NCBITaxon:5478 denotes Candida
T929 6652-6660 NCBITaxon:8296 denotes albicans
T930 6677-6683 UBERON:0001969 denotes plasma
T931 6700-6711 DG_35 denotes Tocilizumab
T932 6831-6836 PR:000001136 denotes IL-1β
T933 6838-6842 PR:000001393 denotes IL-6
T934 6844-6850 PR:000001138 denotes IL-17A
T935 6902-6907 UBERON:0001977 denotes serum
T936 7037-7042 PR:000000134 denotes TNF-α
T937 7058-7063 PR:000001136 denotes IL-1β
T938 7079-7083 PR:000001393 denotes IL-6
T939 7099-7105 PR:000001138 denotes IL-17A
T940 7125-7130 PR:000000017 denotes IFN-γ
T941 7188-7193 UBERON:0001977 denotes serum
T942 7325-7331 UBERON:0002405 denotes immune
T943 7332-7345 GO:0065007 denotes dysregulation
T944 7406-7417 DG_35 denotes Tocilizumab
T945 7495-7503 SP_7 denotes COVID-19
T946 7514-7524 CL:0000542 denotes lymphocyte
T947 7525-7530 UBERON:0000178 denotes blood
T948 7569-7580 DG_35 denotes Tocilizumab
T31044 7325-7331 UBERON:0002405;GO:0006955 denotes immune
T46550 7332-7345 GO:0006955 denotes dysregulation
T8757 461-465 CHEBI:37926;CHEBI:37926 denotes 64 C
T15228 545-549 CHEBI:37926;CHEBI:37926 denotes 3; R
T31419 550-553 PR:000001004 denotes ID:
T27064 557-565 GO:0042571 denotes 2832965
T11016 643-647 CHEBI:37926;CHEBI:37926 denotes CD3
T48908 655-663 GO:0042571 denotes (16+56)-
T5616 719-723 CHEBI:37926;CHEBI:37926 denotes ulte
T51513 737-745 GO:0042571 denotes RRID: AB
T35496 827-831 CHEBI:37926;CHEBI:37926 denotes 2832
T90740 832-835 PR:000001839 denotes 67
T32929 839-847 GO:0042571 denotes tibrite
T21957 917-920 PR:000029150 denotes AB
T46327 929-937 CL:0000576 denotes ouse Ant
T49296 1001-1006 SP_6;NCBITaxon:9606 denotes _4004
T28278 1007-1011 PR:000001393 denotes 2 Ch
T25884 1123-1129 GO:0019835 denotes eckman
T55532 1285-1299 CHEBI:33893;CHEBI:33893 denotes e Glutamine W/
T24761 1380-1390 CL:0000542 denotes BS Dulbecc
T78387 1531-1537 NCBITaxon:27592 denotes 615 Ge
T55579 1538-1543 UBERON:0001977 denotes tamyc
T76503 1580-1587 CHEBI:34674;CHEBI:34674 denotes em A149
T86588 1711-1725 NCBITaxon:562 denotes ich L2880 Crit
T87618 1778-1783 PR:000001136 denotes itrog
T21836 1811-1820 SP_6 denotes ted ELISA
T66250 1854-1863 SP_6 denotes SA Invitr
T67169 1864-1868 PR:000001393 denotes gen
T55039 1887-1896 SP_6 denotes A (homodi
T14549 1897-1903 PR:000001138 denotes er) un
T17627 1943-1952 SP_6 denotes rritin EL
T22213 2005-2010 PR:000000017 denotes SA Di
T63578 2263-2271 CHEBI:33893;CHEBI:33893 denotes reagents
T7202 2460-2468 CHEBI:33893;CHEBI:33893 denotes reagents
T65981 2614-2619 UBERON:0000178 denotes Blood
T39940 2677-2687 SP_7 denotes SARS-CoV-2
T74676 2813-2818 UBERON:0001443 denotes chest
T16247 3027-3032 UBERON:0001443 denotes chest
T14024 3042-3047 UBERON:0001443 denotes chest
T79857 3102-3113 UBERON:0001004 denotes respiratory
T18706 3156-3161 UBERON:0000178 denotes blood
T27746 3297-3302 SP_6;NCBITaxon:9606 denotes human
T50783 3320-3325 NCBITaxon:10239 denotes virus
T88425 3357-3363 GO:0007631 denotes intake
T2166 3367-3384 CHEBI:35705;CHEBI:35705 denotes immunosuppressive
T26144 3397-3412 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T36125 3519-3530 UBERON:0001004 denotes respiratory
T77756 4009-4018 NCBITaxon:2 denotes bacterial
T9349 4185-4195 SP_7 denotes SARS-CoV-2
T41902 4355-4360 CL:0000738 denotes White
T7274 4361-4366 CL:0000738;UBERON:0000178 denotes blood
T92375 4367-4372 CL:0000738 denotes cells
T75417 4431-4441 GO:0042571 denotes antibodies
T41237 4447-4451 PR:000001889 denotes CD14
T77909 4452-4456 CHEBI:37926;CHEBI:37926 denotes FITC
T53972 4463-4466 PR:000029150 denotes HLA
T39351 4479-4483 PR:000001006 denotes CD45
T85797 4541-4544 PR:000029150 denotes HLA
T31596 4553-4561 CL:0000576 denotes monocyte
T34986 4568-4571 CHEBI:37989;CHEBI:37989 denotes Cy5
T31771 4609-4614 CL:0000738 denotes White
T60421 4615-4620 CL:0000738;UBERON:0000178 denotes blood
T63642 4621-4626 CL:0000738 denotes cells
T94262 4672-4676 CHEBI:37926;CHEBI:37926 denotes FITC
T15761 4683-4686 PR:000001004 denotes CD4
T25820 4687-4691 CHEBI:37926;CHEBI:37926 denotes FITC
T80624 4701-4705 PR:000001002 denotes CD19
T53213 4706-4710 CHEBI:37926;CHEBI:37926 denotes FITC
T71308 4712-4738 CHEBI:37926;CHEBI:37926 denotes fluorescein isothiocyanate
T67504 4785-4788 PR:000001004 denotes CD4
T95333 4892-4896 PR:000001006 denotes CD45
T8425 4897-4900 PR:000012437 denotes PC5
T84374 4937-4950 CHEBI:51217;CHEBI:51217 denotes Fluorospheres
T28030 5144-5147 GO:0071735 denotes IgG
T31335 5180-5184 PR:000001006 denotes CD45
T38654 5248-5257 CHEBI:36357;CHEBI:36357 denotes molecules
T14324 5261-5264 PR:000029150 denotes HLA
T91016 5271-5275 PR:000001889 denotes CD14
T280 5276-5280 PR:000001889 denotes CD14
T96315 5281-5285 PR:000001006 denotes CD45
T59635 5347-5352 UBERON:0000178 denotes blood
T72628 5379-5390 CHEBI:48080;CHEBI:48080 denotes brefeldin A
T55076 5448-5451 CHEBI:16526;CHEBI:16526 denotes CO2
T37643 5528-5531 PR:000001004 denotes CD4
T96160 5532-5536 CHEBI:37926;CHEBI:37926 denotes FITC
T30151 5543-5547 PR:000001889 denotes CD14
T57488 5548-5552 CHEBI:37926;CHEBI:37926 denotes FITC
T70801 5580-5584 PR:000001006 denotes CD45
T18750 5585-5588 PR:000012437 denotes PC5
T27300 5601-5604 CL:0000232 denotes red
T32412 5605-5610 CL:0000232;UBERON:0000178 denotes blood
T3825 5611-5616 CL:0000232;GO:0019835 denotes cells
T62107 5617-5622 GO:0019835 denotes lysis
T28836 5751-5758 CHEBI:33893;CHEBI:33893 denotes Reagent
T66816 5787-5791 PR:000001393 denotes IL-6
T7091 5869-5874 UBERON:0000178;CL:0000842 denotes blood
T4072 5875-5886 CL:0000842;GO:0005634 denotes mononuclear
T92603 5887-5892 CL:0000842 denotes cells
T81014 6241-6251 CHEBI:17334;CHEBI:17334 denotes penicillin
T42746 6264-6272 CHEBI:15361;CHEBI:15361 denotes pyruvate
T56715 6284-6290 NCBITaxon:27592 denotes bovine
T59947 6291-6296 UBERON:0001977 denotes serum
T47360 6489-6492 CHEBI:16526;CHEBI:16526 denotes CO2
T13345 6527-6543 NCBITaxon:562 denotes Escherichia coli
T98377 6551-6569 CHEBI:16412;CHEBI:16412 denotes lipopolysaccharide
T29289 6571-6574 CHEBI:16412;CHEBI:16412 denotes LPS
T78784 6644-6651 NCBITaxon:5478 denotes Candida
T50569 6652-6660 NCBITaxon:8296 denotes albicans
T27928 6677-6683 UBERON:0001969 denotes plasma
T75302 6700-6711 DG_35 denotes Tocilizumab
T33622 6831-6836 PR:000001136 denotes IL-1β
T67827 6838-6842 PR:000001393 denotes IL-6
T82641 6844-6850 PR:000001138 denotes IL-17A
T6491 6902-6907 UBERON:0001977 denotes serum
T96805 7037-7042 PR:000000134 denotes TNF-α
T2845 7058-7063 PR:000001136 denotes IL-1β
T91381 7079-7083 PR:000001393 denotes IL-6
T58905 7099-7105 PR:000001138 denotes IL-17A
T25417 7125-7130 PR:000000017 denotes IFN-γ
T18217 7188-7193 UBERON:0001977 denotes serum
T8807 7325-7331 UBERON:0002405 denotes immune
T62677 7332-7345 GO:0065007 denotes dysregulation
T41838 7406-7417 DG_35 denotes Tocilizumab
T58306 7495-7503 SP_7 denotes COVID-19
T55151 7514-7524 CL:0000542 denotes lymphocyte
T59630 7525-7530 UBERON:0000178 denotes blood
T53589 7569-7580 DG_35 denotes Tocilizumab

2_test

Id Subject Object Predicate Lexical cue
32320677-26903338-19656940 2965-2969 26903338 denotes 2016

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1043 83-87 Gene denotes CD14 Gene:929
1044 473-476 Gene denotes CD4 Gene:920
1045 574-577 Gene denotes CD8 Gene:925
1046 754-758 Gene denotes CD19 Gene:930
1047 764-767 Gene denotes CD5 Gene:921
1048 1754-1759 Gene denotes IL-1β Gene:3552
1049 1800-1805 Gene denotes TNF-α Gene:7124
1050 1846-1850 Gene denotes IL-6 Gene:3569
1051 1882-1888 Gene denotes IL-17A Gene:3605
1052 1890-1899 Gene denotes homodimer Gene:6647
1053 1996-2001 Gene denotes IFN-γ Gene:3458
1054 152-156 Gene denotes CD45 Gene:5788
1055 1677-1697 Species denotes Escherichia coli O55 Tax:2170726
1056 1748-1753 Species denotes Human Tax:9606
1057 1794-1799 Species denotes Human Tax:9606
1058 1840-1845 Species denotes Human Tax:9606
1059 1876-1881 Species denotes Human Tax:9606
1060 1935-1940 Species denotes Human Tax:9606
1061 1990-1995 Species denotes Human Tax:9606
1062 939-944 Species denotes Human Tax:9606
1063 87-92 Chemical denotes -FITC
1064 701-704 Disease denotes NKH MESH:D020158
1065 2042-2067 Disease denotes Algorithms GraphPad Prism MESH:D007859
1082 2637-2645 Species denotes patients Tax:9606
1083 2677-2687 Species denotes SARS-CoV-2 Tax:2697049
1084 2830-2837 Species denotes patient Tax:9606
1085 2996-3004 Species denotes patients Tax:9606
1086 3130-3138 Species denotes patients Tax:9606
1087 3297-3325 Species denotes human immunodeficiency virus Tax:12721
1088 3906-3914 Species denotes patients Tax:9606
1089 3955-3963 Species denotes patients Tax:9606
1090 2659-2665 Disease denotes sepsis MESH:D018805
1091 2905-2911 Disease denotes sepsis MESH:D018805
1092 2931-2937 Disease denotes Sepsis MESH:D018805
1093 2972-2977 Disease denotes COVID MESH:C000657245
1094 3280-3289 Disease denotes infection MESH:D007239
1095 3327-3338 Disease denotes neutropenia MESH:D009503
1096 3477-3480 Disease denotes SRF
1097 3740-3754 Disease denotes Sotiria Athens
1101 3995-4003 Species denotes patients Tax:9606
1102 4156-4164 Species denotes patients Tax:9606
1103 4185-4195 Species denotes SARS-CoV-2 Tax:2697049
1119 4447-4451 Gene denotes CD14 Gene:929
1120 4683-4686 Gene denotes CD4 Gene:920
1121 4701-4705 Gene denotes CD19 Gene:930
1122 4785-4788 Gene denotes CD4 Gene:920
1123 4798-4801 Gene denotes CD8 Gene:925
1124 5180-5184 Gene denotes CD45 Gene:5788
1125 5271-5275 Gene denotes CD14 Gene:929
1126 5276-5280 Gene denotes CD14 Gene:929
1127 5281-5285 Gene denotes CD45 Gene:5788
1128 5204-5211 Species denotes patient Tax:9606
1129 4452-4456 Chemical denotes FITC
1130 4672-4676 Chemical denotes FITC
1131 4687-4691 Chemical denotes FITC
1132 4706-4710 Chemical denotes FITC
1133 4712-4738 Chemical denotes fluorescein isothiocyanate
1142 5528-5531 Gene denotes CD4 Gene:920
1143 5543-5547 Gene denotes CD14 Gene:929
1144 5580-5584 Gene denotes CD45 Gene:5788
1145 5379-5390 Chemical denotes brefeldin A MESH:D020126
1146 5448-5451 Chemical denotes CO2 MESH:D002245
1147 5532-5536 Chemical denotes FITC
1148 5548-5552 Chemical denotes FITC
1149 5660-5696 Chemical denotes Dulbecco’s Phosphate Buffered Saline
1172 6825-6829 Gene denotes TNFα Gene:7124
1173 6831-6836 Gene denotes IL-1β Gene:3552
1174 6838-6842 Gene denotes IL-6 Gene:3569
1175 6844-6850 Gene denotes IL-17A Gene:3605
1176 6855-6859 Gene denotes IFNγ Gene:3458
1177 7037-7042 Gene denotes TNF-α Gene:7124
1178 7058-7063 Gene denotes IL-1β Gene:3552
1179 7079-7083 Gene denotes IL-6 Gene:3569
1180 7099-7105 Gene denotes IL-17A Gene:3605
1181 7125-7130 Gene denotes IFN-γ Gene:3458
1182 6527-6547 Species denotes Escherichia coli O55 Tax:2170726
1183 6644-6660 Species denotes Candida albicans Tax:5476
1184 6669-6676 Species denotes patient Tax:9606
1185 6041-6044 Chemical denotes PBS MESH:D007854
1186 6097-6108 Chemical denotes trypan blue MESH:D014343
1187 6191-6202 Chemical denotes L-glutamine MESH:D005973
1188 6217-6227 Chemical denotes gentamicin MESH:D005839
1189 6241-6253 Chemical denotes penicillin G MESH:D010400
1190 6264-6272 Chemical denotes pyruvate MESH:D019289
1191 6489-6492 Chemical denotes CO2 MESH:D002245
1192 6551-6569 Chemical denotes lipopolysaccharide MESH:D008070
1193 6700-6711 Chemical denotes Tocilizumab MESH:C502936
1198 7311-7319 Species denotes patients Tax:9606
1199 7406-7417 Chemical denotes Tocilizumab MESH:C502936
1200 7569-7580 Chemical denotes Tocilizumab MESH:C502936
1201 7495-7503 Disease denotes COVID-19 MESH:C000657245