PMC:7172841 / 26462-34599
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T182 | 72-82 | Body_part | denotes | Antibodies | http://purl.org/sig/ont/fma/fma62871 |
T183 | 220-223 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T184 | 480-488 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
T185 | 581-589 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
T186 | 666-674 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
T187 | 771-779 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
T188 | 852-855 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T189 | 864-872 | Body_part | denotes | Monocyte | http://purl.org/sig/ont/fma/fma62864 |
T190 | 1046-1054 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
T191 | 1287-1296 | Body_part | denotes | Glutamine | http://purl.org/sig/ont/fma/fma82752 |
T192 | 1337-1347 | Body_part | denotes | Lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
T193 | 1501-1506 | Body_part | denotes | Serum | http://purl.org/sig/ont/fma/fma63083 |
T194 | 1652-1671 | Body_part | denotes | Lipopolysaccharides | http://purl.org/sig/ont/fma/fma82785 |
T195 | 1754-1758 | Body_part | denotes | IL-1 | http://purl.org/sig/ont/fma/fma86583 |
T196 | 2614-2619 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
T197 | 2813-2818 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
T198 | 3027-3032 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
T199 | 3042-3047 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
T200 | 3156-3161 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T201 | 3419-3427 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
T202 | 4355-4372 | Body_part | denotes | White blood cells | http://purl.org/sig/ont/fma/fma62852 |
T203 | 4367-4372 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T204 | 4463-4466 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T205 | 4541-4544 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T206 | 4553-4561 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
T207 | 4609-4626 | Body_part | denotes | White blood cells | http://purl.org/sig/ont/fma/fma62852 |
T208 | 4621-4626 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T209 | 5021-5026 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
T210 | 5144-5147 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T211 | 5261-5264 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T212 | 5287-5292 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T213 | 5347-5352 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T214 | 5601-5616 | Body_part | denotes | red blood cells | http://purl.org/sig/ont/fma/fma62845 |
T215 | 5611-5616 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T216 | 5632-5637 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T217 | 5858-5892 | Body_part | denotes | Peripheral blood mononuclear cells | http://purl.org/sig/ont/fma/fma86713 |
T218 | 5887-5892 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T219 | 6127-6132 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T220 | 6193-6202 | Body_part | denotes | glutamine | http://purl.org/sig/ont/fma/fma82752 |
T221 | 6291-6296 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
T222 | 6414-6419 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T223 | 6551-6569 | Body_part | denotes | lipopolysaccharide | http://purl.org/sig/ont/fma/fma82785 |
T224 | 6677-6683 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T225 | 6755-6760 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T226 | 6831-6835 | Body_part | denotes | IL-1 | http://purl.org/sig/ont/fma/fma86583 |
T227 | 6877-6881 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T228 | 6902-6907 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
T229 | 7058-7062 | Body_part | denotes | IL-1 | http://purl.org/sig/ont/fma/fma86583 |
T230 | 7188-7193 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
T231 | 7514-7524 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
T232 | 7525-7530 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T21 | 1501-1506 | Body_part | denotes | Serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
T22 | 2614-2619 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T23 | 2813-2818 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
T24 | 3027-3032 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
T25 | 3042-3047 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
T26 | 3156-3161 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T27 | 4361-4366 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T28 | 4615-4620 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T29 | 5347-5352 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T30 | 5605-5610 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T31 | 5869-5874 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T32 | 6291-6296 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
T33 | 6902-6907 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
T34 | 7188-7193 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
T35 | 7525-7530 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T228 | 0-4 | Disease | denotes | STAR | http://purl.obolibrary.org/obo/MONDO_0010408 |
T229 | 885-887 | Disease | denotes | BD | http://purl.obolibrary.org/obo/MONDO_0007191 |
T230 | 966-968 | Disease | denotes | BD | http://purl.obolibrary.org/obo/MONDO_0007191 |
T231 | 2677-2685 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T232 | 2677-2681 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T233 | 3280-3289 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T234 | 3303-3319 | Disease | denotes | immunodeficiency | http://purl.obolibrary.org/obo/MONDO_0021094 |
T235 | 3327-3338 | Disease | denotes | neutropenia | http://purl.obolibrary.org/obo/MONDO_0001475 |
T236 | 4185-4193 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T237 | 4185-4189 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T238 | 7495-7503 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T237 | 464-467 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
T238 | 464-467 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
T239 | 473-476 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T240 | 565-568 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
T241 | 565-568 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
T242 | 574-577 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T243 | 644-647 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
T244 | 644-647 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
T245 | 754-758 | http://purl.obolibrary.org/obo/CLO_0053432 | denotes | CD19 |
T246 | 764-767 | http://purl.obolibrary.org/obo/PR_000001839 | denotes | CD5 |
T247 | 864-872 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | Monocyte |
T248 | 874-878 | http://purl.obolibrary.org/obo/CLO_0007180 | denotes | L243 |
T249 | 881-883 | http://purl.obolibrary.org/obo/CLO_0008343 | denotes | P9 |
T250 | 928-933 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | Mouse |
T251 | 939-944 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T252 | 1020-1028 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | Peptides |
T253 | 1168-1169 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T254 | 1698-1700 | http://purl.obolibrary.org/obo/CLO_0001818 | denotes | B5 |
T255 | 1748-1753 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T256 | 1794-1799 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T257 | 1840-1845 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T258 | 1876-1881 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T259 | 1935-1940 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T260 | 1990-1995 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T261 | 2614-2619 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
T262 | 2614-2619 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
T263 | 2813-2818 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
T264 | 2828-2829 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T265 | 3027-3032 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
T266 | 3042-3047 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
T267 | 3091-3098 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T268 | 3156-3161 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T269 | 3156-3161 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T270 | 3297-3302 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T271 | 3320-3325 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T272 | 4361-4372 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood cells |
T273 | 4553-4561 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
T274 | 4604-4606 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | Md |
T275 | 4615-4626 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood cells |
T276 | 4668-4671 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
T277 | 4668-4671 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
T278 | 4683-4686 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T279 | 4701-4705 | http://purl.obolibrary.org/obo/CLO_0053432 | denotes | CD19 |
T280 | 4785-4788 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T281 | 4798-4801 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T282 | 5021-5026 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
T283 | 5287-5292 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T284 | 5341-5352 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | whole blood |
T285 | 5341-5352 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | whole blood |
T286 | 5389-5390 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T287 | 5528-5531 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T288 | 5601-5616 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | red blood cells |
T289 | 5632-5637 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T290 | 5858-5892 | http://purl.obolibrary.org/obo/CL_0000842 | denotes | Peripheral blood mononuclear cells |
T291 | 5858-5892 | http://purl.obolibrary.org/obo/CL_2000001 | denotes | Peripheral blood mononuclear cells |
T292 | 5968-5974 | http://purl.obolibrary.org/obo/CLO_0001929 | denotes | Berlin |
T293 | 6075-6076 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T294 | 6127-6132 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T295 | 6334-6335 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T296 | 6393-6394 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T297 | 6414-6419 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T298 | 6548-6550 | http://purl.obolibrary.org/obo/CLO_0001818 | denotes | B5 |
T299 | 6583-6585 | http://purl.obolibrary.org/obo/CLO_0009141 | denotes | St |
T300 | 6583-6585 | http://purl.obolibrary.org/obo/CLO_0050980 | denotes | St |
T301 | 6677-6683 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T302 | 6755-6760 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T303 | 6877-6881 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T304 | 7047-7049 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T305 | 7068-7070 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T306 | 7088-7090 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T307 | 7110-7112 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T308 | 7137-7139 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T309 | 7475-7480 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | label |
T310 | 7525-7530 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T311 | 7525-7530 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T312 | 7743-7747 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T313 | 7841-7845 | http://purl.obolibrary.org/obo/CLO_0009141 | denotes | s “t |
T314 | 7841-7845 | http://purl.obolibrary.org/obo/CLO_0050980 | denotes | s “t |
T315 | 7846-7850 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T316 | 7935-7939 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T317 | 8017-8021 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T166 | 88-92 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T167 | 224-226 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
T168 | 295-297 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T171 | 381-385 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T172 | 468-472 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T173 | 477-479 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T176 | 569-573 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T177 | 578-580 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T180 | 648-652 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T181 | 653-655 | Chemical | denotes | CD | http://purl.obolibrary.org/obo/CHEBI_8673 |
T182 | 663-665 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T185 | 759-763 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T186 | 768-770 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T189 | 856-858 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
T190 | 945-947 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T192 | 950-952 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T195 | 1158-1169 | Chemical | denotes | Brefeldin A | http://purl.obolibrary.org/obo/CHEBI_48080 |
T196 | 1287-1296 | Chemical | denotes | Glutamine | http://purl.obolibrary.org/obo/CHEBI_28300 |
T197 | 1303-1305 | Chemical | denotes | MM | http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707 |
T199 | 1306-1311 | Chemical | denotes | HEPES | http://purl.obolibrary.org/obo/CHEBI_46756 |
T200 | 1394-1403 | Chemical | denotes | Phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26078 |
T202 | 1424-1433 | Chemical | denotes | Magnesium | http://purl.obolibrary.org/obo/CHEBI_25107 |
T203 | 1439-1446 | Chemical | denotes | Calcium | http://purl.obolibrary.org/obo/CHEBI_22984 |
T204 | 1546-1553 | Chemical | denotes | Sulfate | http://purl.obolibrary.org/obo/CHEBI_16189 |
T205 | 1589-1601 | Chemical | denotes | Penicillin G | http://purl.obolibrary.org/obo/CHEBI_18208 |
T206 | 1589-1599 | Chemical | denotes | Penicillin | http://purl.obolibrary.org/obo/CHEBI_17334 |
T207 | 1754-1756 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T209 | 1846-1848 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T211 | 1882-1884 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T213 | 1941-1949 | Chemical | denotes | Ferritin | http://purl.obolibrary.org/obo/CHEBI_82594 |
T214 | 2263-2271 | Chemical | denotes | reagents | http://purl.obolibrary.org/obo/CHEBI_33893 |
T215 | 2460-2468 | Chemical | denotes | reagents | http://purl.obolibrary.org/obo/CHEBI_33893 |
T216 | 3152-3154 | Chemical | denotes | MV | http://purl.obolibrary.org/obo/CHEBI_73616 |
T217 | 3212-3214 | Chemical | denotes | MV | http://purl.obolibrary.org/obo/CHEBI_73616 |
T218 | 3397-3412 | Chemical | denotes | corticosteroids | http://purl.obolibrary.org/obo/CHEBI_50858 |
T219 | 4452-4456 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T220 | 4467-4469 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
T221 | 4470-4472 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T224 | 4545-4547 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
T225 | 4604-4606 | Chemical | denotes | Md | http://purl.obolibrary.org/obo/CHEBI_33395 |
T226 | 4672-4676 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T227 | 4687-4691 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T228 | 4706-4710 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T229 | 4712-4738 | Chemical | denotes | fluorescein isothiocyanate | http://purl.obolibrary.org/obo/CHEBI_37926 |
T230 | 4712-4723 | Chemical | denotes | fluorescein | http://purl.obolibrary.org/obo/CHEBI_31624 |
T231 | 4724-4738 | Chemical | denotes | isothiocyanate | http://purl.obolibrary.org/obo/CHEBI_52221 |
T232 | 4789-4791 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T235 | 4802-4804 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T238 | 4815-4817 | Chemical | denotes | CD | http://purl.obolibrary.org/obo/CHEBI_8673 |
T239 | 4825-4827 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T242 | 5114-5116 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
T243 | 5248-5257 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
T244 | 5265-5267 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
T245 | 5379-5390 | Chemical | denotes | brefeldin A | http://purl.obolibrary.org/obo/CHEBI_48080 |
T246 | 5448-5451 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
T247 | 5532-5536 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T248 | 5548-5552 | Chemical | denotes | FITC | http://purl.obolibrary.org/obo/CHEBI_37926 |
T249 | 5671-5680 | Chemical | denotes | Phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26078 |
T251 | 5787-5789 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T253 | 5792-5794 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
T256 | 6097-6108 | Chemical | denotes | trypan blue | http://purl.obolibrary.org/obo/CHEBI_78897 |
T257 | 6191-6202 | Chemical | denotes | L-glutamine | http://purl.obolibrary.org/obo/CHEBI_18050|http://purl.obolibrary.org/obo/CHEBI_30011|http://purl.obolibrary.org/obo/CHEBI_58359 |
T260 | 6193-6202 | Chemical | denotes | glutamine | http://purl.obolibrary.org/obo/CHEBI_28300 |
T261 | 6241-6253 | Chemical | denotes | penicillin G | http://purl.obolibrary.org/obo/CHEBI_51354 |
T262 | 6241-6251 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
T264 | 6264-6272 | Chemical | denotes | pyruvate | http://purl.obolibrary.org/obo/CHEBI_15361 |
T265 | 6489-6492 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
T266 | 6551-6569 | Chemical | denotes | lipopolysaccharide | http://purl.obolibrary.org/obo/CHEBI_16412 |
T267 | 6571-6574 | Chemical | denotes | LPS | http://purl.obolibrary.org/obo/CHEBI_16412|http://purl.obolibrary.org/obo/CHEBI_52603|http://purl.obolibrary.org/obo/CHEBI_89981 |
T270 | 6831-6833 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T272 | 6838-6840 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T274 | 6844-6846 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T276 | 7058-7060 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T278 | 7079-7081 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T280 | 7099-7101 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
T282 | 7475-7480 | Chemical | denotes | label | http://purl.obolibrary.org/obo/CHEBI_35209 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T33 | 3114-3124 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretions |
T34 | 5617-5622 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T188 | 0-12 | Sentence | denotes | STAR★Methods |
T189 | 14-33 | Sentence | denotes | Key Resources Table |
T190 | 34-71 | Sentence | denotes | REAGENT or RESOURCE SOURCE IDENTIFIER |
T191 | 72-82 | Sentence | denotes | Antibodies |
T192 | 83-151 | Sentence | denotes | CD14-FITC (RMO52 clone) Beckman Coulter Cat#IM0645U; RRID: AB_130992 |
T193 | 152-219 | Sentence | denotes | CD45-PC5 (J33 clone) Beckman Coulter Cat#IM2653U; RRID: AB_10641226 |
T194 | 220-289 | Sentence | denotes | HLA-DR-RD1 (9-49 clone) Beckman Coulter Cat#6604366; RRID: AB_2832962 |
T195 | 290-375 | Sentence | denotes | IgG1-PE isotype control (679.1Mc7 clone) Beckman Coulter Cat#A07796; RRID: AB_2832963 |
T196 | 376-463 | Sentence | denotes | IgG1-FITC isotype control (679.1Mc7 clone) Beckman Coulter Cat#A07795; RRID: AB_2832964 |
T197 | 464-564 | Sentence | denotes | CD3-FITC/CD4-PE Antibody Cocktail (UCHT1/13b8.2 clones) Beckman Coulter Cat#A07733; RRID: AB_2832965 |
T198 | 565-643 | Sentence | denotes | CD3-FITC/CD8-PE Antibody Cocktail Beckman Coulter Cat#A07734; RRID: AB_2832966 |
T199 | 644-753 | Sentence | denotes | CD3-FITC/CD(16+56)-PE Antibody Cocktail (UCHT1/3G8/N901 (NKH-1)) Beckman Coulter Cat#A07735; RRID: AB_1575965 |
T200 | 754-834 | Sentence | denotes | CD19-FITC/CD5-PE Antibody Cocktail Beckman Coulter Cat#IM1346U; RRID: AB_2832967 |
T201 | 835-927 | Sentence | denotes | Quantibrite Anti-HLA-DR/Anti-Monocyte (L243/MϕP9) BD Biosciences Cat#340827; RRID: AB_400137 |
T202 | 928-1008 | Sentence | denotes | Mouse Anti-Human IL-6-PE (AS12 clone) BD Biosciences Cat#340527; RRID: AB_400442 |
T203 | 1009-1054 | Sentence | denotes | Chemicals, Peptides, and Recombinant Proteins |
T204 | 1055-1103 | Sentence | denotes | VersaLyse Lysing Solution Beckman Coulter A09777 |
T205 | 1104-1144 | Sentence | denotes | Fixative Solution Beckman Coulter A07800 |
T206 | 1145-1208 | Sentence | denotes | eBioscience™ Brefeldin A Solution (1000x) Invitrogen 00-4506-51 |
T207 | 1209-1266 | Sentence | denotes | IntraPrep Permeabilization Reagent Beckman Coulter A07802 |
T208 | 1267-1325 | Sentence | denotes | RPMI 1640 W/ Stable Glutamine W/ 25 MM HEPES Biowest L0496 |
T209 | 1326-1378 | Sentence | denotes | Lymphosep, Lymphocyte Separation Media Biowest L0560 |
T210 | 1379-1460 | Sentence | denotes | PBS Dulbecco’s Phosphate Buffered Saline w/o Magnesium, w/o Calcium Biowest L0615 |
T211 | 1461-1534 | Sentence | denotes | FBS Superior; standardized Fetal Bovine Serum, EU-approved Biochrom S0615 |
T212 | 1535-1588 | Sentence | denotes | Gentamycin Sulfate BioChemica PanReac AppliChem A1492 |
T213 | 1589-1651 | Sentence | denotes | Penicillin G Potassium Salt BioChemica PanReac AppliChem A1837 |
T214 | 1652-1720 | Sentence | denotes | Lipopolysaccharides from Escherichia coli O55:B5 Sigma-Aldrich L2880 |
T215 | 1721-1747 | Sentence | denotes | Critical Commercial Assays |
T216 | 1748-1793 | Sentence | denotes | Human IL-1β uncoated ELISA Invitrogen 88-7261 |
T217 | 1794-1839 | Sentence | denotes | Human TNF-α uncoated ELISA Invitrogen 88-7346 |
T218 | 1840-1875 | Sentence | denotes | Human IL-6 ELISA Invitrogen 88-7066 |
T219 | 1876-1934 | Sentence | denotes | Human IL-17A (homodimer) uncoated ELISA Invitrogen 88-7176 |
T220 | 1935-1989 | Sentence | denotes | Human Ferritin ELISA ORGENTEC Diagnostika GmbH ORG 5FE |
T221 | 1990-2028 | Sentence | denotes | Human IFN-γ ELISA Diaclone 950.000.192 |
T222 | 2029-2052 | Sentence | denotes | Software and Algorithms |
T223 | 2053-2110 | Sentence | denotes | GraphPad Prism Graphpad Software https://www.graphpad.com |
T224 | 2111-2174 | Sentence | denotes | SPSS IBM https://www.ibm.com/analytics/spss-statistics-software |
T225 | 2176-2197 | Sentence | denotes | Resource Availability |
T226 | 2199-2211 | Sentence | denotes | Lead Contact |
T227 | 2212-2349 | Sentence | denotes | Further information and requests for resources and reagents should be directed to and will be fulfilled by the Lead Contact, Evangelos J. |
T228 | 2350-2396 | Sentence | denotes | Giamarellos-Bourboulis (egiamarel@med.uoa.gr). |
T229 | 2398-2420 | Sentence | denotes | Materials Availability |
T230 | 2421-2469 | Sentence | denotes | This study did not generate new unique reagents. |
T231 | 2471-2497 | Sentence | denotes | Data and Code Availability |
T232 | 2498-2573 | Sentence | denotes | Data of this study are available after communication with the Lead Contact. |
T233 | 2575-2613 | Sentence | denotes | Experimental Model and Subject Details |
T234 | 2614-2759 | Sentence | denotes | Blood was sampled from patients with CAP and sepsis and CAP by SARS-CoV-2 of either gender within the first 24 h of hospital admission (Table 1). |
T235 | 2760-2971 | Sentence | denotes | CAP was defined as the presence of new infiltrate in chest X-ray in a patient without any contact with any healthcare facility the last 90 days; sepsis was defined by the Sepsis-3 criteria (Singer et al., 2016). |
T236 | 2972-3125 | Sentence | denotes | COVID was diagnosed for patients with CAP confirmed by chest X-ray or chest computed tomography and positive molecular testing of respiratory secretions. |
T237 | 3126-3255 | Sentence | denotes | For patients who required MV, blood sampling was performed within the first 24 h from MV and results were used for this analysis. |
T238 | 3256-3476 | Sentence | denotes | Exclusion criteria were infection by the human immunodeficiency virus; neutropenia; and any previous intake of immunosuppressive medication (corticosteroids, anti-cytokine biologicals, and biological response modifiers). |
T239 | 3477-3589 | Sentence | denotes | SRF was defined as severe decrease of the respiratory ratio necessitating intubation and mechanical ventilation. |
T240 | 3590-3864 | Sentence | denotes | The studies were conducted under the 78/17 approval of the National Ethics Committee of Greece; the 23/12.08.2019 approval of the Ethics Committee of Sotiria Athens General Hospital; and the 26.02.2019 approval of the Ethics Committee of ATTIKON University General Hospital. |
T241 | 3865-3982 | Sentence | denotes | Written informed consent was provided by patients or by first-degree relatives in case of patients unable to consent. |
T242 | 3983-4151 | Sentence | denotes | All data of patients with bacterial CAP screened for participation in the randomized clinical trial with the acronym PROVIDE (ClinicalTrials.gov NCT03332225) were used. |
T243 | 4152-4256 | Sentence | denotes | All patients admitted for CAP by SARS-CoV-2 from March 3 until March 30, 2020 participated in the study. |
T244 | 4257-4338 | Sentence | denotes | No randomization to experimental groups was needed according to the study design. |
T245 | 4340-4354 | Sentence | denotes | Method Details |
T246 | 4355-4608 | Sentence | denotes | White blood cells were incubated for 15 min in the dark with the monoclonal antibodies anti-CD14 FITC, anti-HLA-DR-PE, anti-CD45 PC5 (Beckman Coulter, Marseille, France) and Quantibrite HLA-DR/anti-monocyte PerCP-Cy5 (Becton Dickinson, Cockeysville Md). |
T247 | 4609-4936 | Sentence | denotes | White blood cells were also incubated for 15 min with anti-CD3 FITC, anti-CD4 FITC and anti-CD19 FITC (fluorescein isothiocyanate, emission 525 nm, Beckman Coulter); with anti-CD4 PE, anti-CD8 PE, and anti-CD(16+56) PE (phycoerythrin, emission 575nm, Beckman Coulter); and with anti-CD45 PC5 (emission 667 nm, Beckman Coulter). |
T248 | 4937-5020 | Sentence | denotes | Fluorospheres (Beckman Coulter) were used for the determination of absolute counts. |
T249 | 5021-5134 | Sentence | denotes | Cells were analyzed after running through the CYTOMICS FC500 flow cytometer (Beckman Coulter Co, Miami, Florida). |
T250 | 5135-5212 | Sentence | denotes | Isotypic IgG controls stained also with anti-CD45 were used for each patient. |
T251 | 5213-5315 | Sentence | denotes | Results were expressed as absolute molecules of HLA-DR on CD14/CD14+CD45+ cells, percentages, and MFI. |
T252 | 5316-5623 | Sentence | denotes | In separate experiments, whole blood was treated with 10 μg/mL brefeldin A (Invitrogen, Carlsbad, CA, USA) for 60 min at 37°C in 5% CO2 followed by incubation in the dark for 15 min at room temperature with anti-CD4 FITC, anti-CD14 FITC (Beckman Coulter) and anti-CD45 PC5 followed by red blood cells lysis. |
T253 | 5624-5781 | Sentence | denotes | Stained cells were then washed with Dulbecco’s Phosphate Buffered Saline and permeabilized with the IntraPrep Parmeabilization Reagent kit (Beckman Coulter). |
T254 | 5782-5857 | Sentence | denotes | Anti-IL-6 PE (Beckman Coulter) was added and analyzed after flow cytometry. |
T255 | 5858-6007 | Sentence | denotes | Peripheral blood mononuclear cells (PBMCs) were isolated after gradient centrifugation over Ficoll (Biochrom, Berlin, Germany) for 20 min at 1,400 g. |
T256 | 6008-6133 | Sentence | denotes | After three washings in ice-cold PBS pH 7.2, PBMCs were counted in a Neubauer plate with trypan blue exclusion of dead cells. |
T257 | 6134-6350 | Sentence | denotes | They were then diluted in RPMI 1640 enriched with 2mM of L-glutamine, 500 μg/mL of gentamicin, 100 U/mL of penicillin G, 10 mM of pyruvate, 10% fetal bovine serum (Biochrom) and suspended in wells of a 96-well plate. |
T258 | 6351-6423 | Sentence | denotes | The final volume per well was 200 μL with a density of 2 × 106 cells/mL. |
T259 | 6424-6514 | Sentence | denotes | PBMCs were exposed in duplicate for 24 h or 5 days at 37°C in 5% CO2 to different stimuli: |
T260 | 6515-6736 | Sentence | denotes | 10 ng/mL of Escherichia coli O55:B5 lipopolysaccharide (LPS, Sigma, St. Louis, USA); 5 × 105 colony forming units of heat-killed Candida albicans; 25% of patient plasma; or 10 μg/mL of Tocilizumab (Roche, Athens, Greece). |
T261 | 6737-6806 | Sentence | denotes | After incubation, cells were removed and analyzed for flow cytometry. |
T262 | 6807-6986 | Sentence | denotes | Concentrations of TNFα, IL-1β, IL-6, IL-17A and IFNγ were measured in cell supernatants and/or serum in duplicate by an enzyme immunoassay (Invitrogen, Carlsbad, California, USA). |
T263 | 6987-7143 | Sentence | denotes | The lowest detections limits were as follows: for TNF-α, 40 pg/mL; for IL-1β, 10 pg/mL; for IL-6, 10 pg/mL; for IL-17A, 10 pg/mL; and for IFN-γ, 12.5 pg/mL. |
T264 | 7144-7306 | Sentence | denotes | Concentrations of ferritin were measured in serum by an enzyme-immunoassay (ORGENTEC Diagnostika GmbH, Mainz, Germany); the lower limit of detection was 75 ng/mL. |
T265 | 7307-7504 | Sentence | denotes | Six patients with immune dysregulation were treated with single intravenous infusion of 8 mg/kg of Tocilizumab (RoAcremra, Roche) based on the National Health Care off-label provision for COVID-19. |
T266 | 7505-7590 | Sentence | denotes | Absolute lymphocyte blood counts were compared before and after Tocilizumab infusion. |
T267 | 7592-7631 | Sentence | denotes | Quantification and Statistical Analysis |
T268 | 7632-7748 | Sentence | denotes | Qualitative data were presented as percentages and confidence intervals (CIs) and compared by the Fisher exact test. |
T269 | 7749-7957 | Sentence | denotes | Qualitative data were presented as mean and standard deviation and compared by the Student’ s “t-test”; they were presented as mean and standard error and compared by the Mann-Whitney U test for small groups. |
T270 | 7958-8022 | Sentence | denotes | Paired comparisons were done by the Wilcoxon’s rank-signed test. |
T271 | 8023-8083 | Sentence | denotes | Non-parametric correlations were done according to Spearman. |
T272 | 8084-8137 | Sentence | denotes | Any value of p below 0.05 was considered significant. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T93 | 2659-2665 | Phenotype | denotes | sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
T94 | 2905-2911 | Phenotype | denotes | sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
T95 | 2931-2937 | Phenotype | denotes | Sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
T96 | 3303-3319 | Phenotype | denotes | immunodeficiency | http://purl.obolibrary.org/obo/HP_0002721 |
T97 | 3327-3338 | Phenotype | denotes | neutropenia | http://purl.obolibrary.org/obo/HP_0001875 |
T98 | 7325-7345 | Phenotype | denotes | immune dysregulation | http://purl.obolibrary.org/obo/HP_0002958 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T824 | 381-385 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T825 | 468-472 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T826 | 473-476 | PR:000001004 | denotes | CD4 |
T827 | 480-488 | GO:0042571 | denotes | Antibody |
T828 | 569-573 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T829 | 581-589 | GO:0042571 | denotes | Antibody |
T830 | 648-652 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T831 | 666-674 | GO:0042571 | denotes | Antibody |
T832 | 759-763 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T833 | 764-767 | PR:000001839 | denotes | CD5 |
T834 | 771-779 | GO:0042571 | denotes | Antibody |
T835 | 852-855 | PR:000029150 | denotes | HLA |
T836 | 864-872 | CL:0000576 | denotes | Monocyte |
T837 | 939-944 | SP_6;NCBITaxon:9606 | denotes | Human |
T838 | 945-949 | PR:000001393 | denotes | IL-6 |
T839 | 1065-1071 | GO:0019835 | denotes | Lysing |
T840 | 1236-1251 | CHEBI:33893;CHEBI:33893 | denotes | Reagent Beckman |
T841 | 1337-1347 | CL:0000542 | denotes | Lymphocyte |
T842 | 1494-1500 | NCBITaxon:27592 | denotes | Bovine |
T843 | 1501-1506 | UBERON:0001977 | denotes | Serum |
T844 | 1546-1553 | CHEBI:34674;CHEBI:34674 | denotes | Sulfate |
T845 | 1677-1693 | NCBITaxon:562 | denotes | Escherichia coli |
T846 | 1754-1759 | PR:000001136 | denotes | IL-1β |
T847 | 1789-1799 | SP_6 | denotes | 7261 Human |
T848 | 1835-1845 | SP_6 | denotes | 7346 Human |
T849 | 1846-1850 | PR:000001393 | denotes | IL-6 |
T850 | 1871-1881 | SP_6 | denotes | 7066 Human |
T851 | 1882-1888 | PR:000001138 | denotes | IL-17A |
T852 | 1930-1940 | SP_6 | denotes | 7176 Human |
T853 | 1996-2001 | PR:000000017 | denotes | IFN-γ |
T854 | 2263-2271 | CHEBI:33893;CHEBI:33893 | denotes | reagents |
T855 | 2460-2468 | CHEBI:33893;CHEBI:33893 | denotes | reagents |
T856 | 2614-2619 | UBERON:0000178 | denotes | Blood |
T857 | 2677-2687 | SP_7 | denotes | SARS-CoV-2 |
T858 | 2813-2818 | UBERON:0001443 | denotes | chest |
T859 | 3027-3032 | UBERON:0001443 | denotes | chest |
T860 | 3042-3047 | UBERON:0001443 | denotes | chest |
T861 | 3102-3113 | UBERON:0001004 | denotes | respiratory |
T862 | 3156-3161 | UBERON:0000178 | denotes | blood |
T863 | 3297-3302 | SP_6;NCBITaxon:9606 | denotes | human |
T864 | 3320-3325 | NCBITaxon:10239 | denotes | virus |
T865 | 3357-3363 | GO:0007631 | denotes | intake |
T866 | 3367-3384 | CHEBI:35705;CHEBI:35705 | denotes | immunosuppressive |
T867 | 3397-3412 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T868 | 3519-3530 | UBERON:0001004 | denotes | respiratory |
T869 | 4009-4018 | NCBITaxon:2 | denotes | bacterial |
T870 | 4185-4195 | SP_7 | denotes | SARS-CoV-2 |
T871 | 4355-4360 | CL:0000738 | denotes | White |
T872 | 4361-4366 | CL:0000738;UBERON:0000178 | denotes | blood |
T873 | 4367-4372 | CL:0000738 | denotes | cells |
T874 | 4431-4441 | GO:0042571 | denotes | antibodies |
T875 | 4447-4451 | PR:000001889 | denotes | CD14 |
T876 | 4452-4456 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T877 | 4463-4466 | PR:000029150 | denotes | HLA |
T878 | 4479-4483 | PR:000001006 | denotes | CD45 |
T879 | 4541-4544 | PR:000029150 | denotes | HLA |
T880 | 4553-4561 | CL:0000576 | denotes | monocyte |
T881 | 4568-4571 | CHEBI:37989;CHEBI:37989 | denotes | Cy5 |
T882 | 4609-4614 | CL:0000738 | denotes | White |
T883 | 4615-4620 | CL:0000738;UBERON:0000178 | denotes | blood |
T884 | 4621-4626 | CL:0000738 | denotes | cells |
T885 | 4672-4676 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T886 | 4683-4686 | PR:000001004 | denotes | CD4 |
T887 | 4687-4691 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T888 | 4701-4705 | PR:000001002 | denotes | CD19 |
T889 | 4706-4710 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T890 | 4712-4738 | CHEBI:37926;CHEBI:37926 | denotes | fluorescein isothiocyanate |
T891 | 4785-4788 | PR:000001004 | denotes | CD4 |
T892 | 4892-4896 | PR:000001006 | denotes | CD45 |
T893 | 4897-4900 | PR:000012437 | denotes | PC5 |
T894 | 4937-4950 | CHEBI:51217;CHEBI:51217 | denotes | Fluorospheres |
T895 | 5144-5147 | GO:0071735 | denotes | IgG |
T896 | 5180-5184 | PR:000001006 | denotes | CD45 |
T897 | 5248-5257 | CHEBI:36357;CHEBI:36357 | denotes | molecules |
T898 | 5261-5264 | PR:000029150 | denotes | HLA |
T899 | 5271-5275 | PR:000001889 | denotes | CD14 |
T900 | 5276-5280 | PR:000001889 | denotes | CD14 |
T901 | 5281-5285 | PR:000001006 | denotes | CD45 |
T902 | 5347-5352 | UBERON:0000178 | denotes | blood |
T903 | 5379-5390 | CHEBI:48080;CHEBI:48080 | denotes | brefeldin A |
T904 | 5448-5451 | CHEBI:16526;CHEBI:16526 | denotes | CO2 |
T905 | 5528-5531 | PR:000001004 | denotes | CD4 |
T906 | 5532-5536 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T907 | 5543-5547 | PR:000001889 | denotes | CD14 |
T908 | 5548-5552 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T909 | 5580-5584 | PR:000001006 | denotes | CD45 |
T910 | 5585-5588 | PR:000012437 | denotes | PC5 |
T911 | 5601-5604 | CL:0000232 | denotes | red |
T912 | 5605-5610 | CL:0000232;UBERON:0000178 | denotes | blood |
T913 | 5611-5616 | CL:0000232;GO:0019835 | denotes | cells |
T914 | 5617-5622 | GO:0019835 | denotes | lysis |
T915 | 5751-5758 | CHEBI:33893;CHEBI:33893 | denotes | Reagent |
T916 | 5787-5791 | PR:000001393 | denotes | IL-6 |
T917 | 5869-5874 | UBERON:0000178;CL:0000842 | denotes | blood |
T918 | 5875-5886 | CL:0000842;GO:0005634 | denotes | mononuclear |
T919 | 5887-5892 | CL:0000842 | denotes | cells |
T920 | 6241-6251 | CHEBI:17334;CHEBI:17334 | denotes | penicillin |
T921 | 6264-6272 | CHEBI:15361;CHEBI:15361 | denotes | pyruvate |
T922 | 6284-6290 | NCBITaxon:27592 | denotes | bovine |
T923 | 6291-6296 | UBERON:0001977 | denotes | serum |
T924 | 6489-6492 | CHEBI:16526;CHEBI:16526 | denotes | CO2 |
T925 | 6527-6543 | NCBITaxon:562 | denotes | Escherichia coli |
T926 | 6551-6569 | CHEBI:16412;CHEBI:16412 | denotes | lipopolysaccharide |
T927 | 6571-6574 | CHEBI:16412;CHEBI:16412 | denotes | LPS |
T928 | 6644-6651 | NCBITaxon:5478 | denotes | Candida |
T929 | 6652-6660 | NCBITaxon:8296 | denotes | albicans |
T930 | 6677-6683 | UBERON:0001969 | denotes | plasma |
T931 | 6700-6711 | DG_35 | denotes | Tocilizumab |
T932 | 6831-6836 | PR:000001136 | denotes | IL-1β |
T933 | 6838-6842 | PR:000001393 | denotes | IL-6 |
T934 | 6844-6850 | PR:000001138 | denotes | IL-17A |
T935 | 6902-6907 | UBERON:0001977 | denotes | serum |
T936 | 7037-7042 | PR:000000134 | denotes | TNF-α |
T937 | 7058-7063 | PR:000001136 | denotes | IL-1β |
T938 | 7079-7083 | PR:000001393 | denotes | IL-6 |
T939 | 7099-7105 | PR:000001138 | denotes | IL-17A |
T940 | 7125-7130 | PR:000000017 | denotes | IFN-γ |
T941 | 7188-7193 | UBERON:0001977 | denotes | serum |
T942 | 7325-7331 | UBERON:0002405 | denotes | immune |
T943 | 7332-7345 | GO:0065007 | denotes | dysregulation |
T944 | 7406-7417 | DG_35 | denotes | Tocilizumab |
T945 | 7495-7503 | SP_7 | denotes | COVID-19 |
T946 | 7514-7524 | CL:0000542 | denotes | lymphocyte |
T947 | 7525-7530 | UBERON:0000178 | denotes | blood |
T948 | 7569-7580 | DG_35 | denotes | Tocilizumab |
T31044 | 7325-7331 | UBERON:0002405;GO:0006955 | denotes | immune |
T46550 | 7332-7345 | GO:0006955 | denotes | dysregulation |
T8757 | 461-465 | CHEBI:37926;CHEBI:37926 | denotes | 64 C |
T15228 | 545-549 | CHEBI:37926;CHEBI:37926 | denotes | 3; R |
T31419 | 550-553 | PR:000001004 | denotes | ID: |
T27064 | 557-565 | GO:0042571 | denotes | 2832965 |
T11016 | 643-647 | CHEBI:37926;CHEBI:37926 | denotes | CD3 |
T48908 | 655-663 | GO:0042571 | denotes | (16+56)- |
T5616 | 719-723 | CHEBI:37926;CHEBI:37926 | denotes | ulte |
T51513 | 737-745 | GO:0042571 | denotes | RRID: AB |
T35496 | 827-831 | CHEBI:37926;CHEBI:37926 | denotes | 2832 |
T90740 | 832-835 | PR:000001839 | denotes | 67 |
T32929 | 839-847 | GO:0042571 | denotes | tibrite |
T21957 | 917-920 | PR:000029150 | denotes | AB |
T46327 | 929-937 | CL:0000576 | denotes | ouse Ant |
T49296 | 1001-1006 | SP_6;NCBITaxon:9606 | denotes | _4004 |
T28278 | 1007-1011 | PR:000001393 | denotes | 2 Ch |
T25884 | 1123-1129 | GO:0019835 | denotes | eckman |
T55532 | 1285-1299 | CHEBI:33893;CHEBI:33893 | denotes | e Glutamine W/ |
T24761 | 1380-1390 | CL:0000542 | denotes | BS Dulbecc |
T78387 | 1531-1537 | NCBITaxon:27592 | denotes | 615 Ge |
T55579 | 1538-1543 | UBERON:0001977 | denotes | tamyc |
T76503 | 1580-1587 | CHEBI:34674;CHEBI:34674 | denotes | em A149 |
T86588 | 1711-1725 | NCBITaxon:562 | denotes | ich L2880 Crit |
T87618 | 1778-1783 | PR:000001136 | denotes | itrog |
T21836 | 1811-1820 | SP_6 | denotes | ted ELISA |
T66250 | 1854-1863 | SP_6 | denotes | SA Invitr |
T67169 | 1864-1868 | PR:000001393 | denotes | gen |
T55039 | 1887-1896 | SP_6 | denotes | A (homodi |
T14549 | 1897-1903 | PR:000001138 | denotes | er) un |
T17627 | 1943-1952 | SP_6 | denotes | rritin EL |
T22213 | 2005-2010 | PR:000000017 | denotes | SA Di |
T63578 | 2263-2271 | CHEBI:33893;CHEBI:33893 | denotes | reagents |
T7202 | 2460-2468 | CHEBI:33893;CHEBI:33893 | denotes | reagents |
T65981 | 2614-2619 | UBERON:0000178 | denotes | Blood |
T39940 | 2677-2687 | SP_7 | denotes | SARS-CoV-2 |
T74676 | 2813-2818 | UBERON:0001443 | denotes | chest |
T16247 | 3027-3032 | UBERON:0001443 | denotes | chest |
T14024 | 3042-3047 | UBERON:0001443 | denotes | chest |
T79857 | 3102-3113 | UBERON:0001004 | denotes | respiratory |
T18706 | 3156-3161 | UBERON:0000178 | denotes | blood |
T27746 | 3297-3302 | SP_6;NCBITaxon:9606 | denotes | human |
T50783 | 3320-3325 | NCBITaxon:10239 | denotes | virus |
T88425 | 3357-3363 | GO:0007631 | denotes | intake |
T2166 | 3367-3384 | CHEBI:35705;CHEBI:35705 | denotes | immunosuppressive |
T26144 | 3397-3412 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T36125 | 3519-3530 | UBERON:0001004 | denotes | respiratory |
T77756 | 4009-4018 | NCBITaxon:2 | denotes | bacterial |
T9349 | 4185-4195 | SP_7 | denotes | SARS-CoV-2 |
T41902 | 4355-4360 | CL:0000738 | denotes | White |
T7274 | 4361-4366 | CL:0000738;UBERON:0000178 | denotes | blood |
T92375 | 4367-4372 | CL:0000738 | denotes | cells |
T75417 | 4431-4441 | GO:0042571 | denotes | antibodies |
T41237 | 4447-4451 | PR:000001889 | denotes | CD14 |
T77909 | 4452-4456 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T53972 | 4463-4466 | PR:000029150 | denotes | HLA |
T39351 | 4479-4483 | PR:000001006 | denotes | CD45 |
T85797 | 4541-4544 | PR:000029150 | denotes | HLA |
T31596 | 4553-4561 | CL:0000576 | denotes | monocyte |
T34986 | 4568-4571 | CHEBI:37989;CHEBI:37989 | denotes | Cy5 |
T31771 | 4609-4614 | CL:0000738 | denotes | White |
T60421 | 4615-4620 | CL:0000738;UBERON:0000178 | denotes | blood |
T63642 | 4621-4626 | CL:0000738 | denotes | cells |
T94262 | 4672-4676 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T15761 | 4683-4686 | PR:000001004 | denotes | CD4 |
T25820 | 4687-4691 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T80624 | 4701-4705 | PR:000001002 | denotes | CD19 |
T53213 | 4706-4710 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T71308 | 4712-4738 | CHEBI:37926;CHEBI:37926 | denotes | fluorescein isothiocyanate |
T67504 | 4785-4788 | PR:000001004 | denotes | CD4 |
T95333 | 4892-4896 | PR:000001006 | denotes | CD45 |
T8425 | 4897-4900 | PR:000012437 | denotes | PC5 |
T84374 | 4937-4950 | CHEBI:51217;CHEBI:51217 | denotes | Fluorospheres |
T28030 | 5144-5147 | GO:0071735 | denotes | IgG |
T31335 | 5180-5184 | PR:000001006 | denotes | CD45 |
T38654 | 5248-5257 | CHEBI:36357;CHEBI:36357 | denotes | molecules |
T14324 | 5261-5264 | PR:000029150 | denotes | HLA |
T91016 | 5271-5275 | PR:000001889 | denotes | CD14 |
T280 | 5276-5280 | PR:000001889 | denotes | CD14 |
T96315 | 5281-5285 | PR:000001006 | denotes | CD45 |
T59635 | 5347-5352 | UBERON:0000178 | denotes | blood |
T72628 | 5379-5390 | CHEBI:48080;CHEBI:48080 | denotes | brefeldin A |
T55076 | 5448-5451 | CHEBI:16526;CHEBI:16526 | denotes | CO2 |
T37643 | 5528-5531 | PR:000001004 | denotes | CD4 |
T96160 | 5532-5536 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T30151 | 5543-5547 | PR:000001889 | denotes | CD14 |
T57488 | 5548-5552 | CHEBI:37926;CHEBI:37926 | denotes | FITC |
T70801 | 5580-5584 | PR:000001006 | denotes | CD45 |
T18750 | 5585-5588 | PR:000012437 | denotes | PC5 |
T27300 | 5601-5604 | CL:0000232 | denotes | red |
T32412 | 5605-5610 | CL:0000232;UBERON:0000178 | denotes | blood |
T3825 | 5611-5616 | CL:0000232;GO:0019835 | denotes | cells |
T62107 | 5617-5622 | GO:0019835 | denotes | lysis |
T28836 | 5751-5758 | CHEBI:33893;CHEBI:33893 | denotes | Reagent |
T66816 | 5787-5791 | PR:000001393 | denotes | IL-6 |
T7091 | 5869-5874 | UBERON:0000178;CL:0000842 | denotes | blood |
T4072 | 5875-5886 | CL:0000842;GO:0005634 | denotes | mononuclear |
T92603 | 5887-5892 | CL:0000842 | denotes | cells |
T81014 | 6241-6251 | CHEBI:17334;CHEBI:17334 | denotes | penicillin |
T42746 | 6264-6272 | CHEBI:15361;CHEBI:15361 | denotes | pyruvate |
T56715 | 6284-6290 | NCBITaxon:27592 | denotes | bovine |
T59947 | 6291-6296 | UBERON:0001977 | denotes | serum |
T47360 | 6489-6492 | CHEBI:16526;CHEBI:16526 | denotes | CO2 |
T13345 | 6527-6543 | NCBITaxon:562 | denotes | Escherichia coli |
T98377 | 6551-6569 | CHEBI:16412;CHEBI:16412 | denotes | lipopolysaccharide |
T29289 | 6571-6574 | CHEBI:16412;CHEBI:16412 | denotes | LPS |
T78784 | 6644-6651 | NCBITaxon:5478 | denotes | Candida |
T50569 | 6652-6660 | NCBITaxon:8296 | denotes | albicans |
T27928 | 6677-6683 | UBERON:0001969 | denotes | plasma |
T75302 | 6700-6711 | DG_35 | denotes | Tocilizumab |
T33622 | 6831-6836 | PR:000001136 | denotes | IL-1β |
T67827 | 6838-6842 | PR:000001393 | denotes | IL-6 |
T82641 | 6844-6850 | PR:000001138 | denotes | IL-17A |
T6491 | 6902-6907 | UBERON:0001977 | denotes | serum |
T96805 | 7037-7042 | PR:000000134 | denotes | TNF-α |
T2845 | 7058-7063 | PR:000001136 | denotes | IL-1β |
T91381 | 7079-7083 | PR:000001393 | denotes | IL-6 |
T58905 | 7099-7105 | PR:000001138 | denotes | IL-17A |
T25417 | 7125-7130 | PR:000000017 | denotes | IFN-γ |
T18217 | 7188-7193 | UBERON:0001977 | denotes | serum |
T8807 | 7325-7331 | UBERON:0002405 | denotes | immune |
T62677 | 7332-7345 | GO:0065007 | denotes | dysregulation |
T41838 | 7406-7417 | DG_35 | denotes | Tocilizumab |
T58306 | 7495-7503 | SP_7 | denotes | COVID-19 |
T55151 | 7514-7524 | CL:0000542 | denotes | lymphocyte |
T59630 | 7525-7530 | UBERON:0000178 | denotes | blood |
T53589 | 7569-7580 | DG_35 | denotes | Tocilizumab |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32320677-26903338-19656940 | 2965-2969 | 26903338 | denotes | 2016 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1043 | 83-87 | Gene | denotes | CD14 | Gene:929 |
1044 | 473-476 | Gene | denotes | CD4 | Gene:920 |
1045 | 574-577 | Gene | denotes | CD8 | Gene:925 |
1046 | 754-758 | Gene | denotes | CD19 | Gene:930 |
1047 | 764-767 | Gene | denotes | CD5 | Gene:921 |
1048 | 1754-1759 | Gene | denotes | IL-1β | Gene:3552 |
1049 | 1800-1805 | Gene | denotes | TNF-α | Gene:7124 |
1050 | 1846-1850 | Gene | denotes | IL-6 | Gene:3569 |
1051 | 1882-1888 | Gene | denotes | IL-17A | Gene:3605 |
1052 | 1890-1899 | Gene | denotes | homodimer | Gene:6647 |
1053 | 1996-2001 | Gene | denotes | IFN-γ | Gene:3458 |
1054 | 152-156 | Gene | denotes | CD45 | Gene:5788 |
1055 | 1677-1697 | Species | denotes | Escherichia coli O55 | Tax:2170726 |
1056 | 1748-1753 | Species | denotes | Human | Tax:9606 |
1057 | 1794-1799 | Species | denotes | Human | Tax:9606 |
1058 | 1840-1845 | Species | denotes | Human | Tax:9606 |
1059 | 1876-1881 | Species | denotes | Human | Tax:9606 |
1060 | 1935-1940 | Species | denotes | Human | Tax:9606 |
1061 | 1990-1995 | Species | denotes | Human | Tax:9606 |
1062 | 939-944 | Species | denotes | Human | Tax:9606 |
1063 | 87-92 | Chemical | denotes | -FITC | |
1064 | 701-704 | Disease | denotes | NKH | MESH:D020158 |
1065 | 2042-2067 | Disease | denotes | Algorithms GraphPad Prism | MESH:D007859 |
1082 | 2637-2645 | Species | denotes | patients | Tax:9606 |
1083 | 2677-2687 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
1084 | 2830-2837 | Species | denotes | patient | Tax:9606 |
1085 | 2996-3004 | Species | denotes | patients | Tax:9606 |
1086 | 3130-3138 | Species | denotes | patients | Tax:9606 |
1087 | 3297-3325 | Species | denotes | human immunodeficiency virus | Tax:12721 |
1088 | 3906-3914 | Species | denotes | patients | Tax:9606 |
1089 | 3955-3963 | Species | denotes | patients | Tax:9606 |
1090 | 2659-2665 | Disease | denotes | sepsis | MESH:D018805 |
1091 | 2905-2911 | Disease | denotes | sepsis | MESH:D018805 |
1092 | 2931-2937 | Disease | denotes | Sepsis | MESH:D018805 |
1093 | 2972-2977 | Disease | denotes | COVID | MESH:C000657245 |
1094 | 3280-3289 | Disease | denotes | infection | MESH:D007239 |
1095 | 3327-3338 | Disease | denotes | neutropenia | MESH:D009503 |
1096 | 3477-3480 | Disease | denotes | SRF | |
1097 | 3740-3754 | Disease | denotes | Sotiria Athens | |
1101 | 3995-4003 | Species | denotes | patients | Tax:9606 |
1102 | 4156-4164 | Species | denotes | patients | Tax:9606 |
1103 | 4185-4195 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
1119 | 4447-4451 | Gene | denotes | CD14 | Gene:929 |
1120 | 4683-4686 | Gene | denotes | CD4 | Gene:920 |
1121 | 4701-4705 | Gene | denotes | CD19 | Gene:930 |
1122 | 4785-4788 | Gene | denotes | CD4 | Gene:920 |
1123 | 4798-4801 | Gene | denotes | CD8 | Gene:925 |
1124 | 5180-5184 | Gene | denotes | CD45 | Gene:5788 |
1125 | 5271-5275 | Gene | denotes | CD14 | Gene:929 |
1126 | 5276-5280 | Gene | denotes | CD14 | Gene:929 |
1127 | 5281-5285 | Gene | denotes | CD45 | Gene:5788 |
1128 | 5204-5211 | Species | denotes | patient | Tax:9606 |
1129 | 4452-4456 | Chemical | denotes | FITC | |
1130 | 4672-4676 | Chemical | denotes | FITC | |
1131 | 4687-4691 | Chemical | denotes | FITC | |
1132 | 4706-4710 | Chemical | denotes | FITC | |
1133 | 4712-4738 | Chemical | denotes | fluorescein isothiocyanate | |
1142 | 5528-5531 | Gene | denotes | CD4 | Gene:920 |
1143 | 5543-5547 | Gene | denotes | CD14 | Gene:929 |
1144 | 5580-5584 | Gene | denotes | CD45 | Gene:5788 |
1145 | 5379-5390 | Chemical | denotes | brefeldin A | MESH:D020126 |
1146 | 5448-5451 | Chemical | denotes | CO2 | MESH:D002245 |
1147 | 5532-5536 | Chemical | denotes | FITC | |
1148 | 5548-5552 | Chemical | denotes | FITC | |
1149 | 5660-5696 | Chemical | denotes | Dulbecco’s Phosphate Buffered Saline | |
1172 | 6825-6829 | Gene | denotes | TNFα | Gene:7124 |
1173 | 6831-6836 | Gene | denotes | IL-1β | Gene:3552 |
1174 | 6838-6842 | Gene | denotes | IL-6 | Gene:3569 |
1175 | 6844-6850 | Gene | denotes | IL-17A | Gene:3605 |
1176 | 6855-6859 | Gene | denotes | IFNγ | Gene:3458 |
1177 | 7037-7042 | Gene | denotes | TNF-α | Gene:7124 |
1178 | 7058-7063 | Gene | denotes | IL-1β | Gene:3552 |
1179 | 7079-7083 | Gene | denotes | IL-6 | Gene:3569 |
1180 | 7099-7105 | Gene | denotes | IL-17A | Gene:3605 |
1181 | 7125-7130 | Gene | denotes | IFN-γ | Gene:3458 |
1182 | 6527-6547 | Species | denotes | Escherichia coli O55 | Tax:2170726 |
1183 | 6644-6660 | Species | denotes | Candida albicans | Tax:5476 |
1184 | 6669-6676 | Species | denotes | patient | Tax:9606 |
1185 | 6041-6044 | Chemical | denotes | PBS | MESH:D007854 |
1186 | 6097-6108 | Chemical | denotes | trypan blue | MESH:D014343 |
1187 | 6191-6202 | Chemical | denotes | L-glutamine | MESH:D005973 |
1188 | 6217-6227 | Chemical | denotes | gentamicin | MESH:D005839 |
1189 | 6241-6253 | Chemical | denotes | penicillin G | MESH:D010400 |
1190 | 6264-6272 | Chemical | denotes | pyruvate | MESH:D019289 |
1191 | 6489-6492 | Chemical | denotes | CO2 | MESH:D002245 |
1192 | 6551-6569 | Chemical | denotes | lipopolysaccharide | MESH:D008070 |
1193 | 6700-6711 | Chemical | denotes | Tocilizumab | MESH:C502936 |
1198 | 7311-7319 | Species | denotes | patients | Tax:9606 |
1199 | 7406-7417 | Chemical | denotes | Tocilizumab | MESH:C502936 |
1200 | 7569-7580 | Chemical | denotes | Tocilizumab | MESH:C502936 |
1201 | 7495-7503 | Disease | denotes | COVID-19 | MESH:C000657245 |