PMC:7172841 / 14447-15651
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T77 | 13-17 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T78 | 22-29 | Body_part | denotes | NK Cell | http://purl.org/sig/ont/fma/fma63147 |
| T79 | 25-29 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T80 | 121-138 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T81 | 152-169 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T82 | 189-206 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T83 | 232-237 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T84 | 252-269 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T85 | 549-566 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T86 | 580-597 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T87 | 617-634 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
| T88 | 660-665 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T89 | 680-697 | Body_part | denotes | CD45+ lymphocytes | http://purl.org/sig/ont/fma/fma0326135 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T142 | 64-73 | Disease | denotes | Infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T143 | 77-85 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T144 | 77-81 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T145 | 341-350 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T146 | 390-398 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T147 | 414-422 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T148 | 511-514 | Disease | denotes | MAS | http://purl.obolibrary.org/obo/MONDO_0015545 |
| T149 | 729-748 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T150 | 803-812 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T151 | 823-831 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T122 | 9-12 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T123 | 13-17 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T124 | 22-29 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK Cell |
| T125 | 89-92 | http://purl.obolibrary.org/obo/CLO_0051456 | denotes | A–E |
| T126 | 113-116 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T127 | 113-116 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T128 | 117-120 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T129 | 140-141 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T130 | 144-147 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T131 | 144-147 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T132 | 148-151 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T133 | 171-172 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T134 | 175-178 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T135 | 175-178 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T136 | 212-215 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T137 | 212-215 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T138 | 232-237 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T139 | 247-251 | http://purl.obolibrary.org/obo/CLO_0053432 | denotes | CD19 |
| T140 | 351-356 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T141 | 466-476 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T142 | 541-544 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T143 | 541-544 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T144 | 545-548 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T145 | 572-575 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T146 | 572-575 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T147 | 576-579 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T148 | 603-606 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T149 | 603-606 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T150 | 640-643 | http://purl.obolibrary.org/obo/CLO_0052882 | denotes | CD3 |
| T151 | 640-643 | http://purl.obolibrary.org/obo/CLO_0053434 | denotes | CD3 |
| T152 | 660-665 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T153 | 675-679 | http://purl.obolibrary.org/obo/CLO_0053432 | denotes | CD19 |
| T154 | 767-772 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | field |
| T155 | 813-818 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T156 | 1151-1155 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T64 | 837-839 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21 | 837-853 | http://purl.obolibrary.org/obo/GO_0032620 | denotes | IL-17 production |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T114 | 0-87 | Sentence | denotes | Figure 2 CD4 Cell and NK Cell Cytopenias Are Characteristics of Infection by SARS-CoV-2 |
| T115 | 88-399 | Sentence | denotes | (A–E) Absolute counts of CD3+CD4+CD45+ lymphocytes (A), CD3+CD8+CD45+ lymphocytes (B), CD3+CD16+CD56+CD45+ lymphocytes (C), CD3−CD16+CD56+CD45+ cells (D), and CD19+CD45+ lymphocytes (E) among healthy volunteers, patients with CAP caused by the 2009H1N1 influenza virus, and patients with CAP caused by COVID-19. |
| T116 | 400-515 | Sentence | denotes | Patients with COVID-19 are classified into three states of immune activation: intermediate, dysregulation, and MAS. |
| T117 | 516-832 | Sentence | denotes | (F–J) absolute counts of CD3+CD4+CD45+ lymphocytes (F), CD3+CD8+CD45+ lymphocytes (G), CD3+CD16+CD56+CD45+ lymphocytes (H), CD3−CD16+CD56+CD45+ cells (I), and CD19+CD45+ lymphocytes (J) among patients with severe respiratory failure developing in the field of CAP caused by the 2009H1N1 influenza virus and COVID-19. |
| T118 | 833-915 | Sentence | denotes | (K) IL-17 production by PBMCs after stimulation with heat-killed Candida albicans. |
| T119 | 916-979 | Sentence | denotes | Bars in each graphic represent mean values and standard errors. |
| T120 | 980-1106 | Sentence | denotes | Statistical comparisons are indicated by the arrows; ns: non-significant; ∗p < 0.05; ∗∗p < 0.01; ∗∗∗p < 0.001; ∗∗∗∗p < 0.0001. |
| T121 | 1107-1204 | Sentence | denotes | Comparisons were done by the Mann-Whitney U test followed by correction for multiple comparisons. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T61 | 729-748 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T340 | 77-87 | SP_7 | denotes | SARS-CoV-2 |
| T341 | 117-120 | PR:000001004 | denotes | CD4 |
| T342 | 121-125 | PR:000001006 | denotes | CD45 |
| T343 | 127-138 | CL:0000542 | denotes | lymphocytes |
| T344 | 152-156 | PR:000001006 | denotes | CD45 |
| T345 | 158-169 | CL:0000542 | denotes | lymphocytes |
| T346 | 179-183 | PR:000001483 | denotes | CD16 |
| T347 | 184-188 | PR:000001024 | denotes | CD56 |
| T348 | 189-193 | PR:000001006 | denotes | CD45 |
| T349 | 195-206 | CL:0000542 | denotes | lymphocytes |
| T350 | 216-220 | PR:000001483 | denotes | CD16 |
| T351 | 221-225 | PR:000001024 | denotes | CD56 |
| T352 | 226-230 | PR:000001006 | denotes | CD45 |
| T353 | 247-251 | PR:000001002 | denotes | CD19 |
| T354 | 252-256 | PR:000001006 | denotes | CD45 |
| T355 | 258-269 | CL:0000542 | denotes | lymphocytes |
| T356 | 341-350 | NCBITaxon:7719 | denotes | influenza |
| T357 | 351-356 | NCBITaxon:10239 | denotes | virus |
| T358 | 390-398 | SP_7 | denotes | COVID-19 |
| T359 | 414-422 | SP_7 | denotes | COVID-19 |
| T360 | 459-465 | UBERON:0002405;GO:0006955 | denotes | immune |
| T361 | 466-476 | GO:0042110 | denotes | activation |
| T362 | 492-505 | GO:0065007 | denotes | dysregulation |
| T363 | 545-548 | PR:000001004 | denotes | CD4 |
| T364 | 549-553 | PR:000001006 | denotes | CD45 |
| T365 | 555-566 | CL:0000542 | denotes | lymphocytes |
| T366 | 580-584 | PR:000001006 | denotes | CD45 |
| T367 | 586-597 | CL:0000542 | denotes | lymphocytes |
| T368 | 607-611 | PR:000001483 | denotes | CD16 |
| T369 | 612-616 | PR:000001024 | denotes | CD56 |
| T370 | 617-621 | PR:000001006 | denotes | CD45 |
| T371 | 623-634 | CL:0000542 | denotes | lymphocytes |
| T372 | 644-648 | PR:000001483 | denotes | CD16 |
| T373 | 649-653 | PR:000001024 | denotes | CD56 |
| T374 | 654-658 | PR:000001006 | denotes | CD45 |
| T375 | 675-679 | PR:000001002 | denotes | CD19 |
| T376 | 680-684 | PR:000001006 | denotes | CD45 |
| T377 | 686-697 | CL:0000542 | denotes | lymphocytes |
| T378 | 729-740 | UBERON:0001004 | denotes | respiratory |
| T379 | 803-812 | NCBITaxon:7719 | denotes | influenza |
| T380 | 813-818 | NCBITaxon:10239 | denotes | virus |
| T381 | 823-831 | SP_7 | denotes | COVID-19 |
| T382 | 837-839 | PR:000001092 | denotes | IL |
| T383 | 839-840 | PR:000001092;GO:1990774 | denotes | - |
| T384 | 840-842 | PR:000001092;GO:0032620 | denotes | 17 |
| T385 | 898-905 | NCBITaxon:5478 | denotes | Candida |
| T386 | 906-914 | NCBITaxon:8296 | denotes | albicans |
| T13979 | 13-17 | PR:000001393 | denotes | Cell |
| T99290 | 63-68 | PR:000000134 | denotes | Infe |
| T92330 | 136-139 | PR:000015613 | denotes | es |
| T7470 | 171-181 | SP_7 | denotes | B), CD3+CD |
| T32858 | 226-233 | CHEBI:59132;CHEBI:59132 | denotes | CD45+ c |
| T29886 | 299-313 | CL:0000542 | denotes | patients with |
| T50357 | 323-332 | CL:0000576 | denotes | d by the |
| T32805 | 369-373 | PR:000000134 | denotes | s wi |
| T70527 | 373-374 | PR:000000134;GO:1990774 | denotes | t |
| T71117 | 379-383 | PR:000001393 | denotes | cau |
| T48447 | 452-463 | SP_7 | denotes | tes of immu |
| T30669 | 481-486 | PR:000000134 | denotes | ermed |
| T49400 | 528-537 | NCBITaxon:2 | denotes | te counts |
| T85741 | 580-585 | UBERON:0002405;GO:0006955 | denotes | CD45+ |
| T28986 | 586-596 | GO:0006955 | denotes | lymphocyte |
| T70626 | 620-633 | GO:1990774 | denotes | 5+ lymphocyte |
| T87148 | 634-639 | GO:1990774;PR:000000134 | denotes | (H), |
| T60910 | 680-690 | SP_7 | denotes | CD45+ lymp |
| T60164 | 723-728 | UBERON:0002405;GO:0006955 | denotes | evere |
| T9837 | 729-740 | GO:0006955 | denotes | respiratory |
| T90291 | 757-770 | GO:0065007 | denotes | ng in the fie |
| T61966 | 784-797 | GO:1990774 | denotes | ed by the 200 |
| T99324 | 798-803 | GO:1990774;PR:000000134 | denotes | H1N1 |
| T74804 | 884-889 | NCBITaxon:10239 | denotes | h hea |
| T94178 | 897-907 | SP_7 | denotes | Candida a |
| T94402 | 926-931 | PR:000001136 | denotes | ch gr |
| T75411 | 975-984 | NCBITaxon:2 | denotes | ors. Stat |
| T98184 | 1027-1032 | UBERON:0002405;GO:0006955 | denotes | rows; |
| T78712 | 1033-1043 | GO:0006955 | denotes | ns: non-si |
| T87248 | 1081-1086 | PR:000001136 | denotes | < 0. |
| T19080 | 1127-1137 | SP_7 | denotes | e by the M |
| T22546 | 1170-1175 | UBERON:0002405;GO:0006955 | denotes | rrect |
| T53268 | 1176-1187 | GO:0006955 | denotes | on for mult |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 457 | 9-12 | Gene | denotes | CD4 | Gene:920 |
| 458 | 22-40 | Disease | denotes | NK Cell Cytopenias | MESH:D054066 |
| 459 | 64-73 | Disease | denotes | Infection | MESH:D007239 |
| 479 | 117-120 | Gene | denotes | CD4 | Gene:920 |
| 480 | 121-125 | Gene | denotes | CD45 | Gene:5788 |
| 481 | 148-151 | Gene | denotes | CD8 | Gene:925 |
| 482 | 152-156 | Gene | denotes | CD45 | Gene:5788 |
| 483 | 179-183 | Gene | denotes | CD16 | Gene:2214 |
| 484 | 184-188 | Gene | denotes | CD56 | Gene:4684 |
| 485 | 189-193 | Gene | denotes | CD45 | Gene:5788 |
| 486 | 216-220 | Gene | denotes | CD16 | Gene:2214 |
| 487 | 221-225 | Gene | denotes | CD56 | Gene:4684 |
| 488 | 226-230 | Gene | denotes | CD45 | Gene:5788 |
| 489 | 247-251 | Gene | denotes | CD19 | Gene:930 |
| 490 | 252-256 | Gene | denotes | CD45 | Gene:5788 |
| 491 | 300-308 | Species | denotes | patients | Tax:9606 |
| 492 | 336-340 | Species | denotes | H1N1 | Tax:114727 |
| 493 | 341-356 | Species | denotes | influenza virus | Tax:11309 |
| 494 | 362-370 | Species | denotes | patients | Tax:9606 |
| 495 | 400-408 | Species | denotes | Patients | Tax:9606 |
| 496 | 390-398 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 497 | 414-422 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 515 | 545-548 | Gene | denotes | CD4 | Gene:920 |
| 516 | 549-553 | Gene | denotes | CD45 | Gene:5788 |
| 517 | 576-579 | Gene | denotes | CD8 | Gene:925 |
| 518 | 580-584 | Gene | denotes | CD45 | Gene:5788 |
| 519 | 607-611 | Gene | denotes | CD16 | Gene:2214 |
| 520 | 612-616 | Gene | denotes | CD56 | Gene:4684 |
| 521 | 617-621 | Gene | denotes | CD45 | Gene:5788 |
| 522 | 644-648 | Gene | denotes | CD16 | Gene:2214 |
| 523 | 649-653 | Gene | denotes | CD56 | Gene:4684 |
| 524 | 654-658 | Gene | denotes | CD45 | Gene:5788 |
| 525 | 675-679 | Gene | denotes | CD19 | Gene:930 |
| 526 | 680-684 | Gene | denotes | CD45 | Gene:5788 |
| 527 | 708-716 | Species | denotes | patients | Tax:9606 |
| 528 | 798-802 | Species | denotes | H1N1 | Tax:114727 |
| 529 | 803-818 | Species | denotes | influenza virus | Tax:11309 |
| 530 | 729-748 | Disease | denotes | respiratory failure | MESH:D012131 |
| 531 | 823-831 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 534 | 837-842 | Gene | denotes | IL-17 | Gene:3605 |
| 535 | 898-914 | Species | denotes | Candida albicans | Tax:5476 |