PMC:7166029 / 9385-10239 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"228","span":{"begin":813,"end":846},"obj":"Gene"},{"id":"229","span":{"begin":491,"end":508},"obj":"Species"},{"id":"230","span":{"begin":509,"end":526},"obj":"Species"},{"id":"231","span":{"begin":482,"end":490},"obj":"Disease"},{"id":"240","span":{"begin":359,"end":376},"obj":"Gene"},{"id":"241","span":{"begin":66,"end":73},"obj":"Species"},{"id":"242","span":{"begin":186,"end":194},"obj":"Species"},{"id":"243","span":{"begin":288,"end":296},"obj":"Species"},{"id":"244","span":{"begin":345,"end":353},"obj":"Species"},{"id":"245","span":{"begin":2,"end":10},"obj":"Disease"},{"id":"246","span":{"begin":114,"end":122},"obj":"Disease"},{"id":"247","span":{"begin":214,"end":222},"obj":"Disease"}],"attributes":[{"id":"A229","pred":"tao:has_database_id","subj":"229","obj":"Tax:11320"},{"id":"A230","pred":"tao:has_database_id","subj":"230","obj":"Tax:11520"},{"id":"A231","pred":"tao:has_database_id","subj":"231","obj":"MESH:C000657245"},{"id":"A241","pred":"tao:has_database_id","subj":"241","obj":"Tax:9606"},{"id":"A242","pred":"tao:has_database_id","subj":"242","obj":"Tax:9606"},{"id":"A243","pred":"tao:has_database_id","subj":"243","obj":"Tax:9606"},{"id":"A244","pred":"tao:has_database_id","subj":"244","obj":"Tax:9606"},{"id":"A245","pred":"tao:has_database_id","subj":"245","obj":"MESH:C000657245"},{"id":"A246","pred":"tao:has_database_id","subj":"246","obj":"MESH:C000657245"},{"id":"A247","pred":"tao:has_database_id","subj":"247","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T71","span":{"begin":156,"end":161},"obj":"Body_part"},{"id":"T72","span":{"begin":258,"end":262},"obj":"Body_part"},{"id":"T73","span":{"begin":684,"end":689},"obj":"Body_part"},{"id":"T74","span":{"begin":708,"end":713},"obj":"Body_part"},{"id":"T75","span":{"begin":739,"end":745},"obj":"Body_part"},{"id":"T76","span":{"begin":819,"end":824},"obj":"Body_part"},{"id":"T77","span":{"begin":837,"end":841},"obj":"Body_part"}],"attributes":[{"id":"A71","pred":"fma_id","subj":"T71","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A72","pred":"fma_id","subj":"T72","obj":"http://purl.org/sig/ont/fma/fma59756"},{"id":"A73","pred":"fma_id","subj":"T73","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A74","pred":"fma_id","subj":"T74","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A75","pred":"fma_id","subj":"T75","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A76","pred":"fma_id","subj":"T76","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A77","pred":"fma_id","subj":"T77","obj":"http://purl.org/sig/ont/fma/fma59756"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T35","span":{"begin":156,"end":161},"obj":"Body_part"},{"id":"T36","span":{"begin":684,"end":689},"obj":"Body_part"},{"id":"T37","span":{"begin":708,"end":713},"obj":"Body_part"},{"id":"T38","span":{"begin":739,"end":745},"obj":"Body_part"},{"id":"T39","span":{"begin":819,"end":824},"obj":"Body_part"}],"attributes":[{"id":"A35","pred":"uberon_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A36","pred":"uberon_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A37","pred":"uberon_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A38","pred":"uberon_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A39","pred":"uberon_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T68","span":{"begin":2,"end":10},"obj":"Disease"},{"id":"T69","span":{"begin":114,"end":122},"obj":"Disease"},{"id":"T70","span":{"begin":214,"end":222},"obj":"Disease"},{"id":"T71","span":{"begin":359,"end":368},"obj":"Disease"},{"id":"T72","span":{"begin":482,"end":490},"obj":"Disease"},{"id":"T73","span":{"begin":491,"end":500},"obj":"Disease"},{"id":"T74","span":{"begin":509,"end":518},"obj":"Disease"}],"attributes":[{"id":"A68","pred":"mondo_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A69","pred":"mondo_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A70","pred":"mondo_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A71","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A72","pred":"mondo_id","subj":"T72","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A73","pred":"mondo_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A74","pred":"mondo_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T103","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T104","span":{"begin":369,"end":370},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T105","span":{"begin":375,"end":376},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T106","span":{"begin":452,"end":456},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T107","span":{"begin":501,"end":502},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T108","span":{"begin":503,"end":508},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T109","span":{"begin":519,"end":520},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T110","span":{"begin":521,"end":526},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T111","span":{"begin":549,"end":553},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T112","span":{"begin":582,"end":586},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T113","span":{"begin":615,"end":619},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T114","span":{"begin":819,"end":824},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T115","span":{"begin":819,"end":824},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T80","span":{"begin":11,"end":23},"obj":"Chemical"},{"id":"T81","span":{"begin":19,"end":23},"obj":"Chemical"},{"id":"T82","span":{"begin":123,"end":135},"obj":"Chemical"},{"id":"T83","span":{"begin":131,"end":135},"obj":"Chemical"},{"id":"T84","span":{"begin":223,"end":236},"obj":"Chemical"},{"id":"T85","span":{"begin":231,"end":236},"obj":"Chemical"},{"id":"T86","span":{"begin":439,"end":451},"obj":"Chemical"},{"id":"T87","span":{"begin":447,"end":451},"obj":"Chemical"}],"attributes":[{"id":"A80","pred":"chebi_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A81","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A82","pred":"chebi_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A83","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A84","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A85","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-sentences","denotations":[{"id":"T86","span":{"begin":0,"end":84},"obj":"Sentence"},{"id":"T87","span":{"begin":85,"end":113},"obj":"Sentence"},{"id":"T88","span":{"begin":114,"end":204},"obj":"Sentence"},{"id":"T89","span":{"begin":205,"end":297},"obj":"Sentence"},{"id":"T90","span":{"begin":298,"end":421},"obj":"Sentence"},{"id":"T91","span":{"begin":422,"end":467},"obj":"Sentence"},{"id":"T92","span":{"begin":468,"end":526},"obj":"Sentence"},{"id":"T93","span":{"begin":527,"end":625},"obj":"Sentence"},{"id":"T94","span":{"begin":626,"end":683},"obj":"Sentence"},{"id":"T95","span":{"begin":684,"end":707},"obj":"Sentence"},{"id":"T96","span":{"begin":708,"end":738},"obj":"Sentence"},{"id":"T97","span":{"begin":739,"end":760},"obj":"Sentence"},{"id":"T98","span":{"begin":761,"end":789},"obj":"Sentence"},{"id":"T99","span":{"begin":790,"end":812},"obj":"Sentence"},{"id":"T100","span":{"begin":813,"end":836},"obj":"Sentence"},{"id":"T101","span":{"begin":837,"end":854},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T192","span":{"begin":2,"end":10},"obj":"SP_7"},{"id":"T193","span":{"begin":11,"end":18},"obj":"GO:0005634"},{"id":"T194","span":{"begin":114,"end":122},"obj":"SP_7"},{"id":"T195","span":{"begin":123,"end":130},"obj":"GO:0005634"},{"id":"T196","span":{"begin":156,"end":161},"obj":"UBERON:0001988"},{"id":"T197","span":{"begin":214,"end":222},"obj":"SP_7"},{"id":"T198","span":{"begin":223,"end":230},"obj":"GO:0005634"},{"id":"T201","span":{"begin":439,"end":446},"obj":"GO:0005634"},{"id":"T20807","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T61730","span":{"begin":20,"end":26},"obj":"GO:0005634"},{"id":"T93353","span":{"begin":52,"end":57},"obj":"UBERON:0001988"},{"id":"T66017","span":{"begin":110,"end":118},"obj":"SP_7"},{"id":"T51944","span":{"begin":119,"end":126},"obj":"GO:0005634"},{"id":"T199","span":{"begin":334,"end":340},"obj":"GO:0005634"},{"id":"T200","span":{"begin":659,"end":666},"obj":"UBERON:0000178"},{"id":"T46475","span":{"begin":699,"end":705},"obj":"GO:0005634"},{"id":"T98722","span":{"begin":749,"end":755},"obj":"GO:0005634"},{"id":"T6805","span":{"begin":781,"end":789},"obj":"SP_7"}],"text":"A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. The detection rate was 1.3%. COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ).\nTable 2 Types of nucleic acid test specimens.\nSpecimen type COVID-19 Influenza A Virus Influenza B Virus\nPositive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases\nPharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510\nFeces 8 (19) 43 0 6 0 6\nSerum 0 31 2 (13) 15 2 (13) 15\nSputum 0 15 0 15 0 15\nBronchial lavage 0 1 0 1 0 1\nNasal swab 0 6 / / / /\nWhole blood 0 1 / / / /\nTear 0 10 / / / /"}