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PMC:7160442 / 4446-7981 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
50 911-919 Species denotes patients Tax:9606
51 58-66 Disease denotes COVID-19 MESH:C000657245
52 749-754 Disease denotes fever MESH:D005334
53 756-767 Disease denotes sore throat MESH:D010608
54 772-777 Disease denotes cough MESH:D003371
55 788-798 Disease denotes pneumonias MESH:D011014
56 950-964 Disease denotes critically ill MESH:D016638
57 1002-1010 Disease denotes COVID-19 MESH:C000657245
71 1392-1396 Gene denotes ship Gene:3635
72 1605-1611 Species denotes people Tax:9606
73 1682-1685 Species denotes men Tax:9606
74 1690-1696 Species denotes people Tax:9606
75 1772-1780 Species denotes Children Tax:9606
76 1812-1822 Species denotes SARS-CoV-2 Tax:2697049
77 1850-1858 Species denotes children Tax:9606
78 1145-1155 Disease denotes infections MESH:D007239
79 1439-1449 Disease denotes infections MESH:D007239
80 1702-1714 Disease denotes hypertension MESH:D006973
81 1716-1724 Disease denotes diabetes MESH:D003920
82 1737-1755 Disease denotes pulmonary diseases MESH:D008171
83 1798-1806 Disease denotes infected MESH:D007239
87 2606-2616 Chemical denotes remdesivir MESH:C000606551
88 2618-2636 Chemical denotes hydroxychloroquine MESH:D006886
89 2658-2667 Chemical denotes lopinavir MESH:D061466
92 2972-2976 Species denotes H1N1 Tax:114727
93 2890-2898 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 146-153 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T5 761-767 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 761-767 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T3 2101-2106 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T20 58-66 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 756-767 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T22 788-798 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T23 1002-1010 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 1145-1155 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T25 1439-1449 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T26 1702-1714 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T27 1716-1724 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T28 1737-1755 Disease denotes pulmonary diseases http://purl.obolibrary.org/obo/MONDO_0005275
T29 1812-1820 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 2005-2019 Disease denotes infectiousness http://purl.obolibrary.org/obo/MONDO_0005550
T31 2890-2898 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 2960-2977 Disease denotes influenza A(H1N1) http://purl.obolibrary.org/obo/MONDO_0005460
T33 2960-2969 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T34 3412-3421 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T22 44-49 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 214-215 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 252-257 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T25 372-373 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T26 547-554 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 to 14
T27 712-713 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1027-1029 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T29 1174-1179 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 1351-1352 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 1383-1384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 1560-1565 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 1923-1928 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T34 1986-1991 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 2048-2053 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T36 2418-2419 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 2475-2487 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T38 2641-2642 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 2726-2727 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 2824-2826 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T41 2835-2836 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T42 2970-2971 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 3090-3103 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisations
T44 3149-3150 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 3240-3244 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T46 3240-3244 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T47 3436-3439 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T48 3448-3461 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisations

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2431-2440 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T2 2451-2456 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T3 2606-2616 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T4 2618-2636 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T5 2658-2681 Chemical denotes lopinavir and ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T6 2658-2667 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T7 2672-2681 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T8 2698-2708 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T9 2709-2713 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T29 0-39 Sentence denotes Knowledge gains and remaining questions
T30 40-262 Sentence denotes The virus causing COVID-19 was identified and announced on 7 January and by 10 January, sequences of five genomes had been shared, providing scientists around the world with a basis for development of diagnostic tests [8].
T31 263-371 Sentence denotes There was fast growing knowledge about several important parameters for understanding the spread of disease.
T32 372-1031 Sentence denotes A number of studies in various settings determined the basic reproductive number R0 to be within the range of 2–3 [9,10]; the incubation period was determined as ranging from 1 to 14 days with an average of 5–6 days; transmission through droplets was established as the main mode of transmission; the clinical picture that emerged included a wide range from mild symptoms with fever, sore throat and cough to severe pneumonias with characteristic features on computed tomography scans; in Hubei, China, up to 13.8% of laboratory-confirmed patients had severe disease, 6.1% were critically ill and the case fatality rate among all COVID-19 cases was 2.3% [11].
T33 1032-1273 Sentence denotes Further questions on topics such as the possibility of asymptomatic transmission, the proportion of asymptomatic infections, stability of the virus in the environment and main risk groups [12] were partly answered as the pandemic progressed.
T34 1274-1499 Sentence denotes Evidence of asymptomatic transmission was documented in several settings and a study based on an outbreak on a cruise ship determined the proportion of asymptomatic infections as 17.9% (95% credible interval: 15.5–20.2) [13].
T35 1500-1593 Sentence denotes Laboratory experiments provided data on the survival of the virus on different surfaces [14].
T36 1594-1771 Sentence denotes Aside from people older than 70 years, severe and fatal cases were seen particularly in men and people with hypertension, diabetes, underlying pulmonary diseases and in smokers.
T37 1772-1918 Sentence denotes Children were shown to be infected with SARS-CoV-2 [15], however, the role of children in disease transmission still needs to be fully elucidated.
T38 1919-2020 Sentence denotes The focus of ongoing research includes determining the duration of virus shedding and infectiousness.
T39 2021-2154 Sentence denotes Development of serological tests with good sensitivity and specificity for wide-scale use is necessary to assess population immunity.
T40 2155-2333 Sentence denotes Serological studies have been started in several European countries to define population immunity and studies on the duration of immunity will need to be conducted in the future.
T41 2334-2457 Sentence denotes Clinical trials are being conducted worldwide to investigate treatment options with a variety of antiviral and other drugs.
T42 2458-2725 Sentence denotes The World Health Organization (WHO) and European Union-funded projects are coordinating multi-centre adaptive trials to assess the effectiveness of remdesivir, hydroxychloroquine and a combination of lopinavir and ritonavir with or without interferon-beta-1a [16,17].
T43 2726-2834 Sentence denotes A number of vaccine trials are ongoing worldwide with earliest results expected within the coming 18 months.
T44 2835-2992 Sentence denotes A number of questions and challenges that arose in the COVID-19 pandemic appear similar to those experienced during the 2009 influenza A(H1N1)pdm09 pandemic.
T45 2993-3359 Sentence denotes However, information sharing by scientists was faster in 2020, also facilitated by international organisations, widespread social media use and policies of a number of scientific journals, including Eurosurveillance, that enabled fast-tracking of peer-reviewed articles, publishing of articles already deposited in pre-print servers, and making articles open access.
T46 3360-3535 Sentence denotes In particular, the global initiative on sharing all influenza data (GISAID) has allowed organisations like nextstrain.org to collectively perform analysis in almost real time.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 749-754 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 756-767 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T4 772-777 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T5 788-798 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T6 1702-1714 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822

2_test

Id Subject Object Predicate Lexical cue
32290905-31992387-29338432 259-260 31992387 denotes 8
32290905-32052846-29338433 487-488 32052846 denotes 9
32290905-32097725-29338434 489-491 32097725 denotes 10
32290905-32183930-29338435 1495-1497 32183930 denotes 13
32290905-32182409-29338436 1589-1591 32182409 denotes 14
32290905-32187458-29338437 1824-1826 32187458 denotes 15

MyTest

Id Subject Object Predicate Lexical cue
32290905-31992387-29338432 259-260 31992387 denotes 8
32290905-32052846-29338433 487-488 32052846 denotes 9
32290905-32097725-29338434 489-491 32097725 denotes 10
32290905-32183930-29338435 1495-1497 32183930 denotes 13
32290905-32182409-29338436 1589-1591 32182409 denotes 14
32290905-32187458-29338437 1824-1826 32187458 denotes 15