> top > docs > PMC:7153689 > spans > 654-3223 > annotations

PMC:7153689 / 654-3223 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
21 92-116 Disease denotes coronavirus disease 2019 MESH:C000657245
22 129-137 Disease denotes COVID-19 MESH:C000657245
23 160-168 Disease denotes infected MESH:D007239
24 189-195 Disease denotes deaths MESH:D003643
25 316-325 Disease denotes infection MESH:D007239
26 601-609 Disease denotes COVID-19 MESH:C000657245
27 664-673 Disease denotes infection MESH:D007239
28 718-724 Disease denotes deaths MESH:D003643
29 1200-1205 Disease denotes death MESH:D003643
44 1311-1319 Disease denotes COVID-19 MESH:C000657245
45 1332-1350 Disease denotes zoonotic infection MESH:D015047
46 1600-1608 Disease denotes infected MESH:D007239
47 1641-1674 Disease denotes severe acute respiratory syndrome MESH:D045169
48 1707-1739 Disease denotes Middle East respiratory syndrome MESH:D018352
49 1741-1745 Disease denotes MERS MESH:D018352
50 1858-1866 Disease denotes COVID-19 MESH:C000657245
51 1880-1884 Disease denotes MERS MESH:D018352
52 1963-1968 Disease denotes fever MESH:D005334
53 2047-2055 Disease denotes COVID-19 MESH:C000657245
54 2151-2160 Disease denotes infection MESH:D007239
55 2175-2194 Disease denotes respiratory illness MESH:D012140
56 2420-2441 Disease denotes respiratory illnesses MESH:D012140
57 2560-2568 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 970-979 Body_part denotes extension http://purl.obolibrary.org/obo/UBERON_2000106

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 92-116 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T10 129-137 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 316-325 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 601-609 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 664-673 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 1311-1319 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 1332-1350 Disease denotes zoonotic infection http://purl.obolibrary.org/obo/MONDO_0025481
T16 1341-1350 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T17 1641-1674 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T18 1676-1680 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 1858-1866 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 1871-1875 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 2047-2055 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 2151-2160 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 2453-2463 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T24 2471-2481 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T25 2560-2568 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T8 210-211 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 335-338 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 1330-1331 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1390-1396 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T12 1424-1430 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T13 1456-1461 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 1465-1470 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T15 2205-2206 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2401-2402 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1963-1968 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 2069-2082 Phenotype denotes loss of smell http://purl.obolibrary.org/obo/HP_0000458
T3 2087-2100 Phenotype denotes loss of taste http://purl.obolibrary.org/obo/HP_0000223
T4 2175-2194 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T5 2420-2441 Phenotype denotes respiratory illnesses http://purl.obolibrary.org/obo/HP_0002086

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2095-2100 http://purl.obolibrary.org/obo/GO_0050909 denotes taste

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T7 0-30 Sentence denotes The New Year with New Pandemic
T8 31-236 Sentence denotes As of 26 March 2020, 171 countries have been affected by the coronavirus disease 2019 or known as COVID-19 pandemic with 467,866 infected patients and 20,845 deaths, representing a 4.5% mortality rate (1).
T9 237-496 Sentence denotes While, at the time of writing, China is the most affected country, the rate of infection in China has slowed down significantly; however, this is not the case in Italy or the United States, which are the second and third most affected countries, respectively.
T10 497-762 Sentence denotes Association of Southeast Asian Nations (ASEAN) countries, including Malaysia, have not been spared from COVID-19, although there have been fluctuations in the rate of infection demonstrated in the number of new cases and deaths reported in March 2020 (Table 1) (2).
T11 763-872 Sentence denotes Barely three months after the first reported case, many countries have ordered lockdowns, including Malaysia.
T12 873-993 Sentence denotes The Malaysian government announced an initial movement restriction order on 16 March 2020 and an extension to mid-April.
T13 994-1042 Sentence denotes These measure have been enacted for good reason.
T14 1043-1310 Sentence denotes The trend in new cases does not appear to have peaked yet for Malaysia or other ASEAN countries (Figure 1) (3), although there have been fluctuations in the death rates (Figure 2) (1) perhaps due to different critical care capacities and resources in these countries.
T15 1311-1431 Sentence denotes COVID-19 is likely a zoonotic infection, which was transmitted from an unknown animal or environmental source to humans.
T16 1432-1536 Sentence denotes It is now spreading via human-to-human transmission with an average basic reproductive rate (R0) of 2.2.
T17 1537-1613 Sentence denotes In other words, for each patient, 2.2 other individuals become infected (4).
T18 1614-1765 Sentence denotes For comparison, the R0 for severe acute respiratory syndrome (SARS) was estimated at 3.0 and Middle East respiratory syndrome (MERS) was less than 1.0.
T19 1766-1999 Sentence denotes Based on the epidemiological data from Wuhan, there are several notable differences between COVID-19 and SARS and MERS: i) case fatality rates are lower; ii) asymptomatic spread can occur and iii) fever is more frequently absent (5).
T20 2000-2161 Sentence denotes Gastrointestinal complaints are uncommon among COVID-19 patients but loss of smell and loss of taste have been increasingly reported as early signs of infection.
T21 2162-2344 Sentence denotes Severe acute respiratory illness (SARI) is a severe complication, and typical computed tomography (CT) features include ground-glass and consolidative opacities in the periphery (6).
T22 2345-2569 Sentence denotes However, it must be borne in mind that SARI can also be a manifestation of respiratory illnesses with other infectious or non-infectious causes, which need to be ruled out before attributing the presence of SARI to COVID-19.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T9 92-103 NCBITaxon:11118 denotes coronavirus
T10 129-137 SP_7 denotes COVID-19
T11 189-195 GO:0016265 denotes deaths
T12 601-609 SP_7 denotes COVID-19
T13 718-724 GO:0016265 denotes deaths
T14 1200-1205 GO:0016265 denotes death
T15 1311-1319 SP_7 denotes COVID-19
T16 1390-1396 NCBITaxon:33208 denotes animal
T17 1424-1430 NCBITaxon:9606 denotes humans
T18 1456-1461 SP_6;NCBITaxon:9606 denotes human
T19 1465-1470 SP_6;NCBITaxon:9606 denotes human
T20 1506-1518 GO:0000003 denotes reproductive
T21 1581-1592 NCBITaxon:1 denotes individuals
T22 1654-1665 UBERON:0001004 denotes respiratory
T23 1676-1680 SP_10 denotes SARS
T24 1719-1730 UBERON:0001004 denotes respiratory
T25 1741-1745 SP_9 denotes MERS
T26 1858-1866 SP_7 denotes COVID-19
T27 1871-1875 SP_10 denotes SARS
T28 1880-1884 SP_9 denotes MERS
T29 2000-2016 UBERON:0005409 denotes Gastrointestinal
T30 2047-2055 SP_7 denotes COVID-19
T31 2095-2100 GO:0050909 denotes taste
T32 2175-2186 UBERON:0001004 denotes respiratory
T33 2420-2431 UBERON:0001004 denotes respiratory
T34 2560-2568 SP_7 denotes COVID-19
T83321 92-103 NCBITaxon:11118 denotes coronavirus
T52078 129-137 SP_7 denotes COVID-19
T33936 189-195 GO:0016265 denotes deaths
T43126 601-609 SP_7 denotes COVID-19
T16282 718-724 GO:0016265 denotes deaths
T72932 1200-1205 GO:0016265 denotes death
T32412 1311-1319 SP_7 denotes COVID-19
T89963 1390-1396 NCBITaxon:33208 denotes animal
T31781 1424-1430 NCBITaxon:9606 denotes humans
T83144 1456-1461 SP_6;NCBITaxon:9606 denotes human
T63366 1465-1470 SP_6;NCBITaxon:9606 denotes human
T52298 1506-1518 GO:0000003 denotes reproductive
T30955 1581-1592 NCBITaxon:1 denotes individuals
T70774 1654-1665 UBERON:0001004 denotes respiratory
T5012 1676-1680 SP_10 denotes SARS
T74826 1719-1730 UBERON:0001004 denotes respiratory
T39879 1741-1745 SP_9 denotes MERS
T29769 1858-1866 SP_7 denotes COVID-19
T33957 1871-1875 SP_10 denotes SARS
T77424 1880-1884 SP_9 denotes MERS
T82120 2000-2016 UBERON:0005409 denotes Gastrointestinal
T33388 2047-2055 SP_7 denotes COVID-19
T63063 2095-2100 GO:0050909 denotes taste
T61621 2175-2186 UBERON:0001004 denotes respiratory
T21223 2420-2431 UBERON:0001004 denotes respiratory
T65782 2560-2568 SP_7 denotes COVID-19

2_test

Id Subject Object Predicate Lexical cue
32308536-31995857-66949959 1610-1611 31995857 denotes 4
32308536-32369286-66949960 1996-1997 32369286 denotes 5