PMC:7152911 / 117648-118661 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1859 348-374 Species denotes Mycobacterium tuberculosis Tax:1773
1860 407-424 Species denotes Naegleria fowleri Tax:5763
1861 733-754 Species denotes Clostridium difficile Tax:1496
1862 882-891 Species denotes S. aureus Tax:1280
1863 303-313 Species denotes Legionella Tax:446
1864 756-758 Species denotes CD Tax:1496
1865 801-803 Species denotes CD Tax:1496
1866 860-871 Chemical denotes methicillin MESH:D008712
1867 332-346 Disease denotes Legionnellosis
1868 389-401 Disease denotes tuberculosis MESH:D014376
1869 439-457 Disease denotes amoebic meningitis MESH:D004404
1870 649-659 Disease denotes infections MESH:D007239
1871 815-823 Disease denotes diarrhea MESH:D003967
1872 847-854 Disease denotes colitis MESH:D003092
1873 920-930 Disease denotes infections MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T17 955-959 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T18 975-988 Body_part denotes urinary tract http://purl.org/sig/ont/fma/fma0326482

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T90 303-313 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T91 362-374 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T92 389-401 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T93 447-457 Disease denotes meningitis http://purl.obolibrary.org/obo/MONDO_0004796|http://purl.obolibrary.org/obo/MONDO_0021108
T95 649-659 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T96 815-823 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T97 847-854 Disease denotes colitis http://purl.obolibrary.org/obo/MONDO_0005292
T98 893-897 Disease denotes MRSA http://purl.obolibrary.org/obo/MONDO_0100073
T99 920-933 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T114 272-273 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 474-482 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T116 975-988 http://purl.obolibrary.org/obo/UBERON_0001008 denotes urinary tract

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T37111 668-672 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T33883 693-697 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T9618 709-712 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T89888 756-758 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T97800 801-803 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T69352 828-838 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T94262 860-871 Chemical denotes methicillin http://purl.obolibrary.org/obo/CHEBI_6827

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 693-707 http://purl.obolibrary.org/obo/GO_0042493 denotes drug resistant

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 447-457 Phenotype denotes meningitis http://purl.obolibrary.org/obo/HP_0001287
T12 693-707 Phenotype denotes drug resistant http://purl.obolibrary.org/obo/HP_0020174
T13 815-823 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T14 847-854 Phenotype denotes colitis http://purl.obolibrary.org/obo/HP_0002583
T15 913-930 Phenotype denotes severe infections http://purl.obolibrary.org/obo/HP_0032169

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T954 0-124 Sentence denotes Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al.
T955 125-131 Sentence denotes 2017).
T956 132-237 Sentence denotes Here, we describe the most common environmental pathogens found both in and outside of clinical settings.
T957 238-458 Sentence denotes Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis.
T958 459-560 Sentence denotes In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens.
T959 561-1013 Sentence denotes Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008).

2_test

Id Subject Object Predicate Lexical cue
32364936-12920503-7713160 104-108 12920503 denotes 2003
32364936-19340897-7713161 781-785 19340897 denotes 2009
32364936-18462090-7713162 1007-1011 18462090 denotes 2008