PMC:7152911 / 117648-118661 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"1859","span":{"begin":348,"end":374},"obj":"Species"},{"id":"1860","span":{"begin":407,"end":424},"obj":"Species"},{"id":"1861","span":{"begin":733,"end":754},"obj":"Species"},{"id":"1862","span":{"begin":882,"end":891},"obj":"Species"},{"id":"1863","span":{"begin":303,"end":313},"obj":"Species"},{"id":"1864","span":{"begin":756,"end":758},"obj":"Species"},{"id":"1865","span":{"begin":801,"end":803},"obj":"Species"},{"id":"1866","span":{"begin":860,"end":871},"obj":"Chemical"},{"id":"1867","span":{"begin":332,"end":346},"obj":"Disease"},{"id":"1868","span":{"begin":389,"end":401},"obj":"Disease"},{"id":"1869","span":{"begin":439,"end":457},"obj":"Disease"},{"id":"1870","span":{"begin":649,"end":659},"obj":"Disease"},{"id":"1871","span":{"begin":815,"end":823},"obj":"Disease"},{"id":"1872","span":{"begin":847,"end":854},"obj":"Disease"},{"id":"1873","span":{"begin":920,"end":930},"obj":"Disease"}],"attributes":[{"id":"A1859","pred":"tao:has_database_id","subj":"1859","obj":"Tax:1773"},{"id":"A1860","pred":"tao:has_database_id","subj":"1860","obj":"Tax:5763"},{"id":"A1861","pred":"tao:has_database_id","subj":"1861","obj":"Tax:1496"},{"id":"A1862","pred":"tao:has_database_id","subj":"1862","obj":"Tax:1280"},{"id":"A1863","pred":"tao:has_database_id","subj":"1863","obj":"Tax:446"},{"id":"A1864","pred":"tao:has_database_id","subj":"1864","obj":"Tax:1496"},{"id":"A1865","pred":"tao:has_database_id","subj":"1865","obj":"Tax:1496"},{"id":"A1866","pred":"tao:has_database_id","subj":"1866","obj":"MESH:D008712"},{"id":"A1868","pred":"tao:has_database_id","subj":"1868","obj":"MESH:D014376"},{"id":"A1869","pred":"tao:has_database_id","subj":"1869","obj":"MESH:D004404"},{"id":"A1870","pred":"tao:has_database_id","subj":"1870","obj":"MESH:D007239"},{"id":"A1871","pred":"tao:has_database_id","subj":"1871","obj":"MESH:D003967"},{"id":"A1872","pred":"tao:has_database_id","subj":"1872","obj":"MESH:D003092"},{"id":"A1873","pred":"tao:has_database_id","subj":"1873","obj":"MESH:D007239"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T17","span":{"begin":955,"end":959},"obj":"Body_part"},{"id":"T18","span":{"begin":975,"end":988},"obj":"Body_part"}],"attributes":[{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma256135"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma0326482"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T90","span":{"begin":303,"end":313},"obj":"Disease"},{"id":"T91","span":{"begin":362,"end":374},"obj":"Disease"},{"id":"T92","span":{"begin":389,"end":401},"obj":"Disease"},{"id":"T93","span":{"begin":447,"end":457},"obj":"Disease"},{"id":"T95","span":{"begin":649,"end":659},"obj":"Disease"},{"id":"T96","span":{"begin":815,"end":823},"obj":"Disease"},{"id":"T97","span":{"begin":847,"end":854},"obj":"Disease"},{"id":"T98","span":{"begin":893,"end":897},"obj":"Disease"},{"id":"T99","span":{"begin":920,"end":933},"obj":"Disease"}],"attributes":[{"id":"A90","pred":"mondo_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/MONDO_0005824"},{"id":"A91","pred":"mondo_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/MONDO_0018076"},{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0018076"},{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0004796"},{"id":"A94","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0021108"},{"id":"A95","pred":"mondo_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A96","pred":"mondo_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A97","pred":"mondo_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/MONDO_0005292"},{"id":"A98","pred":"mondo_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/MONDO_0100073"},{"id":"A99","pred":"mondo_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T114","span":{"begin":272,"end":273},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T115","span":{"begin":474,"end":482},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2"},{"id":"T116","span":{"begin":975,"end":988},"obj":"http://purl.obolibrary.org/obo/UBERON_0001008"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T37111","span":{"begin":668,"end":672},"obj":"Chemical"},{"id":"T33883","span":{"begin":693,"end":697},"obj":"Chemical"},{"id":"T9618","span":{"begin":709,"end":712},"obj":"Chemical"},{"id":"T89888","span":{"begin":756,"end":758},"obj":"Chemical"},{"id":"T97800","span":{"begin":801,"end":803},"obj":"Chemical"},{"id":"T69352","span":{"begin":828,"end":838},"obj":"Chemical"},{"id":"T94262","span":{"begin":860,"end":871},"obj":"Chemical"}],"attributes":[{"id":"A33846","pred":"chebi_id","subj":"T37111","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A92887","pred":"chebi_id","subj":"T33883","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A36998","pred":"chebi_id","subj":"T9618","obj":"http://purl.obolibrary.org/obo/CHEBI_53218"},{"id":"A39555","pred":"chebi_id","subj":"T89888","obj":"http://purl.obolibrary.org/obo/CHEBI_8673"},{"id":"A39798","pred":"chebi_id","subj":"T97800","obj":"http://purl.obolibrary.org/obo/CHEBI_8673"},{"id":"A1114","pred":"chebi_id","subj":"T69352","obj":"http://purl.obolibrary.org/obo/CHEBI_33281"},{"id":"A23444","pred":"chebi_id","subj":"T94262","obj":"http://purl.obolibrary.org/obo/CHEBI_6827"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T5","span":{"begin":693,"end":707},"obj":"http://purl.obolibrary.org/obo/GO_0042493"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T11","span":{"begin":447,"end":457},"obj":"Phenotype"},{"id":"T12","span":{"begin":693,"end":707},"obj":"Phenotype"},{"id":"T13","span":{"begin":815,"end":823},"obj":"Phenotype"},{"id":"T14","span":{"begin":847,"end":854},"obj":"Phenotype"},{"id":"T15","span":{"begin":913,"end":930},"obj":"Phenotype"}],"attributes":[{"id":"A11","pred":"hp_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/HP_0001287"},{"id":"A12","pred":"hp_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/HP_0020174"},{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A14","pred":"hp_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/HP_0002583"},{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0032169"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T954","span":{"begin":0,"end":124},"obj":"Sentence"},{"id":"T955","span":{"begin":125,"end":131},"obj":"Sentence"},{"id":"T956","span":{"begin":132,"end":237},"obj":"Sentence"},{"id":"T957","span":{"begin":238,"end":458},"obj":"Sentence"},{"id":"T958","span":{"begin":459,"end":560},"obj":"Sentence"},{"id":"T959","span":{"begin":561,"end":1013},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}

{"project":"2_test","denotations":[{"id":"32364936-12920503-7713160","span":{"begin":104,"end":108},"obj":"12920503"},{"id":"32364936-19340897-7713161","span":{"begin":781,"end":785},"obj":"19340897"},{"id":"32364936-18462090-7713162","span":{"begin":1007,"end":1011},"obj":"18462090"}],"text":"Several comprehensive reviews have been provided on the detection of environmental pathogens (Baeumner, 2003; Justino et al. 2017). Here, we describe the most common environmental pathogens found both in and outside of clinical settings. Common environmental pathogens in a non-clinical setting include Legionella spp., which cause Legionnellosis, Mycobacterium tuberculosis, which causes tuberculosis, and Naegleria fowleri, which causes amoebic meningitis. In addition to bacteria and protozoa, fungi, nematodes, and insects are also environmental pathogens. Common environmental pathogens in clinical settings associated with healthcare-acquired infections include drug-resistant and multi-drug resistant (MDR) pathogens, such as Clostridium difficile (CD) (Hookman and Barkin, 2009), which causes CD-associated diarrhea and antibiotic-induced colitis, and methicillin-resistant S. aureus (MRSA), which causes severe infections in various parts of the body, including the urinary tract (Gordon and Lowy, 2008)."}