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PMC:7148425 / 7060-8565 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
87 442-445 Gene denotes CD4 Gene:920
88 124-132 Species denotes SARS-CoV Tax:694009
89 300-306 Species denotes humans Tax:9606
90 769-773 Species denotes H7N1 Tax:119216
91 961-971 Species denotes SARS-CoV-2 Tax:2697049
92 1171-1181 Species denotes SARS-CoV-2 Tax:2697049
93 157-166 Disease denotes infection MESH:D007239
94 326-331 Disease denotes Fever MESH:D005334
95 1032-1052 Disease denotes SARS-CoV-1 infection MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32300370-26459351-46535325 525-526 26459351 denotes 7
32300370-24642138-46535326 1078-1079 24642138 denotes 8
T83295 525-526 26459351 denotes 7
T89624 1078-1079 24642138 denotes 8

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T104 124-132 SP_10 denotes SARS-CoV
T105 251-257 UBERON:0002405 denotes immune
T106 288-296 CHEBI:59132;CHEBI:59132 denotes antigens
T107 300-306 NCBITaxon:9606 denotes humans
T108 384-391 CHEBI:59132;CHEBI:59132 denotes antigen
T109 425-432 CHEBI:59132;CHEBI:59132 denotes antigen
T110 442-445 PR:000001004 denotes CD4
T111 486-494 GO:0042571;GO:0016064 denotes antibody
T112 495-504 GO:0016064 denotes responses
T113 763-768 NCBITaxon:8782 denotes avian
T114 884-889 NCBITaxon:10239 denotes virus
T115 940-946 UBERON:0007023 denotes adults
T116 961-971 SP_7 denotes SARS-CoV-2
T117 973-980 NCBITaxon:9443 denotes Primate
T118 1021-1028 NCBITaxon:9527 denotes monkeys
T119 1032-1040 SP_10 denotes SARS-CoV
T120 1151-1158 CHEBI:59132;CHEBI:59132 denotes antigen
T121 1159-1167 BV_9 denotes epitopes
T122 1171-1181 SP_7 denotes SARS-CoV-2
T123 1191-1199 GO:0042571 denotes antibody
T124 1200-1206 CL:0000236 denotes B cell
T125 1221-1227 CL:0000084 denotes T cell
T126 1345-1359 BV_26 denotes vaccine design
T127 1374-1379 UBERON:0007023 denotes adult
T128 1412-1413 CL:0000084;GO:0042110 denotes T
T129 1418-1424 CL:0000236 denotes B cell
T130 1465-1471 UBERON:0002405 denotes immune
T75384 124-132 SP_10 denotes SARS-CoV
T50695 251-257 UBERON:0002405 denotes immune
T94168 288-296 CHEBI:59132;CHEBI:59132 denotes antigens
T28705 300-306 NCBITaxon:9606 denotes humans
T64389 384-391 CHEBI:59132;CHEBI:59132 denotes antigen
T38276 425-432 CHEBI:59132;CHEBI:59132 denotes antigen
T7547 442-445 PR:000001004 denotes CD4
T95385 486-494 GO:0042571;GO:0016064 denotes antibody
T9300 495-504 GO:0016064 denotes responses
T3690 763-768 NCBITaxon:8782 denotes avian
T99926 884-889 NCBITaxon:10239 denotes virus
T69227 940-946 UBERON:0007023 denotes adults
T14255 961-971 SP_7 denotes SARS-CoV-2
T82466 973-980 NCBITaxon:9443 denotes Primate
T65870 1021-1028 NCBITaxon:9527 denotes monkeys
T94402 1032-1040 SP_10 denotes SARS-CoV
T30255 1151-1158 CHEBI:59132;CHEBI:59132 denotes antigen
T66613 1159-1167 BV_9 denotes epitopes
T56090 1171-1181 SP_7 denotes SARS-CoV-2
T36704 1191-1199 GO:0042571 denotes antibody
T7050 1200-1206 CL:0000236 denotes B cell
T65037 1221-1227 CL:0000084 denotes T cell
T67706 1345-1359 BV_26 denotes vaccine design
T19395 1374-1379 UBERON:0007023 denotes adult
T25144 1412-1413 CL:0000084;GO:0042110 denotes T
T99685 1418-1424 CL:0000236 denotes B cell
T30945 1465-1471 UBERON:0002405 denotes immune

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T39 384-408 Body_part denotes antigen-presenting cells http://purl.org/sig/ont/fma/fma273565
T40 403-408 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T41 457-462 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T42 486-494 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T43 1191-1199 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T44 1202-1206 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T45 1223-1227 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T46 1420-1424 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 124-132 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 157-166 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 319-331 Disease denotes Yellow Fever http://purl.obolibrary.org/obo/MONDO_0020502
T27 599-608 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T28 709-718 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T29 961-969 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 1032-1040 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 1043-1052 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 1171-1179 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T57 98-99 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 300-306 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T59 308-309 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T60 403-408 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T61 413-414 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 442-445 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T63 457-462 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T64 665-668 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T65 884-889 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T66 973-980 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes Primate
T67 1021-1028 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkeys
T68 1082-1083 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T69 1200-1206 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T70 1221-1227 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T71 1387-1390 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T72 1404-1405 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 1418-1424 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 288-296 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T8 384-391 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T9 425-432 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T10 447-449 Chemical denotes Th http://purl.obolibrary.org/obo/CHEBI_33385
T11 1151-1158 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 0-34 Sentence denotes Biomarkers and vaccine requirement
T41 35-78 Sentence denotes There are few precedents to assist us here.
T42 79-183 Sentence denotes Efforts to develop a prophylactic vaccine or SARS-CoV-1 were shelved when the infection faded by itself.
T43 184-307 Sentence denotes There are surprisingly few data available concerning the status of immune responsiveness to truly novel antigens in humans.
T44 308-528 Sentence denotes A study on Yellow Fever vaccination of the elderly pointed to dysfunctional antigen-presenting cells and a dearth of antigen-specific CD4+ Th helper cells as culprits in the low antibody responses of older vaccinees [7].
T45 529-621 Sentence denotes Otherwise, we have to rely mostly on the large literature on seasonal influenza vaccination.
T46 622-797 Sentence denotes However, the problem here is that everyone has already been exposed to some strains of influenza and even newly-emerging strains such as the avian H7N1 are not entirely novel.
T47 798-972 Sentence denotes Nonetheless, knowledge garnered on immunity and responses to vaccination against this virus may tell us something about the capacity of older adults to respond to SARS-CoV-2.
T48 973-1081 Sentence denotes Primate models featuring the responses of older monkeys to SARS-CoV-1 infection may also be informative [8].
T49 1082-1331 Sentence denotes A systems biology approach will be needed to identify the protective antigen/epitopes of SARS-CoV-2 for both antibody/B cell responses and T cell responses and to classify them as protective or non-protective responses to serve as useful biomarkers.
T50 1332-1505 Sentence denotes Importantly, vaccine design for the older adult should aim to stimulate a broad T and B cell response potentially overcoming reduced immune function in the older population.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 326-331 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945