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PMC:7143804 / 13482-15854 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 783-786 https://glytoucan.org/Structures/Glycans/G00063MO denotes CAD

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T33 511-513 Body_part denotes V2 http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615
T35 514-517 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T36 953-956 Body_part denotes CAM http://purl.org/sig/ont/fma/fma67214
T37 1368-1377 Body_part denotes trapezoid http://purl.org/sig/ont/fma/fma23724
T38 1488-1498 Body_part denotes trapezoids http://purl.org/sig/ont/fma/fma23724
T39 2306-2308 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T40 2313-2321 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T20 783-786 Disease denotes CAD http://purl.obolibrary.org/obo/MONDO_0005010|http://purl.obolibrary.org/obo/MONDO_0018922
T22 1065-1068 Disease denotes CNC http://purl.obolibrary.org/obo/MONDO_0015285|http://purl.obolibrary.org/obo/MONDO_0019134

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T92 94-95 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 117-118 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 158-162 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2, a
T95 350-352 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T96 755-759 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T97 1035-1036 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 1065-1068 http://purl.obolibrary.org/obo/UBERON_0003099 denotes CNC
T99 1304-1305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 1726-1727 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T101 1936-1937 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T102 2050-2051 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 2139-2140 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 2322-2323 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T82 270-283 Chemical denotes food coloring http://purl.obolibrary.org/obo/CHEBI_77182
T83 284-287 Chemical denotes dye http://purl.obolibrary.org/obo/CHEBI_37958
T84 514-517 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T85 537-539 Chemical denotes GE http://purl.obolibrary.org/obo/CHEBI_73801
T86 621-624 Chemical denotes dye http://purl.obolibrary.org/obo/CHEBI_37958
T87 625-633 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T88 1065-1068 Chemical denotes CNC http://purl.obolibrary.org/obo/CHEBI_48390
T89 1644-1651 Chemical denotes mixture http://purl.obolibrary.org/obo/CHEBI_60004
T90 2094-2101 Chemical denotes mixture http://purl.obolibrary.org/obo/CHEBI_60004

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T7 514-531 http://purl.obolibrary.org/obo/GO_0006277 denotes DNA amplification

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T112 0-4 Sentence denotes 2.1.
T113 5-34 Sentence denotes Microfluidic Structure Design
T114 35-147 Sentence denotes The microfluidic structure consists of two chambers, i.e., a reaction chamber and a temperature monitor chamber.
T115 148-199 Sentence denotes In Figure 2, a close-up of the final chip is shown.
T116 200-288 Sentence denotes For clarity reasons, the two microfluidic structures are colored with food coloring dye.
T117 289-737 Sentence denotes The reaction chamber is based on the work of Bruijns et al. [36] and its dimensions are chosen in such way that the internal volume of the reaction chamber is the same as the reaction volume of the used Illustra GenomiPhi V2 DNA amplification kit (GE Healthcare Life Sciences, Eindhoven, The Netherlands) together with the EvaGreen dye solution (Biotium, Fremont, CA, USA), while maintaining an as low as possible surface-area-to-volume ratio [44].
T118 738-1083 Sentence denotes Using SolidWorks 2018 computer-aided design (CAD) software (Dassault Systemes, Vélizy-Villacoublay, France), the 3D image of the chip is drawn and with the use of the AutoDesk HSMWorks computer-aided manufacturing (CAM) plug-in (Autodesk Inc., San Rafael, CA, USA), this image is transferred into a computer numerical control (CNC) milling code.
T119 1084-1172 Sentence denotes The total chip size is 3 cm by 3 cm and contains an inlet and outlet of 1.5 mm diameter.
T120 1173-1270 Sentence denotes The inlet and outlet are of such size that the reaction chamber can be filled using pipette tips.
T121 1271-1363 Sentence denotes In between the inlet and outlet, a rectangular reaction chamber of 10 mm by 3 mm is located.
T122 1364-1465 Sentence denotes Two trapezoid structures are placed in the tapered channels between the inlet/outlet and the chamber.
T123 1466-1510 Sentence denotes The function of these trapezoids is twofold:
T124 1511-1671 Sentence denotes First, they minimize the dead volume between the inlet/outlet and the reaction chamber, locating as much as possible of the reaction mixture inside the chamber.
T125 1672-1725 Sentence denotes Second, they provide support for the chamber closure.
T126 1726-1883 Sentence denotes A stadium-shaped channel of 1.5 mm wide and 1.0 mm deep is located next to the reaction chamber, in such way that this channel is also covered by the heater.
T127 1884-1935 Sentence denotes This channel serves as temperature monitor chamber.
T128 1936-2039 Sentence denotes A thermocouple is inserted in this channel for real-time monitoring of the temperature inside the chip.
T129 2040-2134 Sentence denotes This way, a more accurate temperature of the reaction mixture inside the chip can be obtained.
T130 2135-2205 Sentence denotes Via a feedback loop, the input potential can be changed when required.
T131 2206-2295 Sentence denotes In Figure 3, the SolidWorks design of the chamber-based chip with both chambers is shown.
T132 2296-2372 Sentence denotes In Figure A1, in Appendix A, the technical drawing of the chip can be found.