PMC:7143583 / 1885-2769
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 69 | 636-654 | Disease | denotes | lung emphysematous | MESH:D041882 |
| 70 | 732-741 | Disease | denotes | infection | MESH:D007239 |
| 71 | 745-760 | Disease | denotes | pulmonary edema | MESH:D011654 |
| 72 | 859-867 | Disease | denotes | effusion | MESH:D010996 |
| 73 | 871-883 | Disease | denotes | pneumothorax | MESH:D011030 |
| 81 | 4-11 | Species | denotes | patient | Tax:9606 |
| 82 | 160-167 | Species | denotes | patient | Tax:9606 |
| 83 | 328-335 | Species | denotes | patient | Tax:9606 |
| 84 | 498-505 | Species | denotes | patient | Tax:9606 |
| 85 | 49-55 | Chemical | denotes | oxygen | MESH:D010100 |
| 86 | 410-428 | Disease | denotes | pulmonary embolism | MESH:D011655 |
| 87 | 576-584 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T6 | 100-104 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T7 | 237-242 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T8 | 441-446 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T9 | 602-607 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T10 | 636-640 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T11 | 838-843 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 237-242 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T6 | 441-446 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T7 | 602-607 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T8 | 636-640 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T9 | 838-843 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T8 | 410-428 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
| T9 | 576-584 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T10 | 732-741 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T11 | 745-760 | Disease | denotes | pulmonary edema | http://purl.obolibrary.org/obo/MONDO_0006932 |
| T12 | 871-883 | Disease | denotes | pneumothorax | http://purl.obolibrary.org/obo/MONDO_0002076 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12 | 100-104 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T13 | 189-190 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T14 | 191-192 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T15 | 201-202 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T16 | 237-242 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T17 | 441-446 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T18 | 602-607 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T19 | 620-622 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
| T20 | 636-640 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T21 | 636-640 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T22 | 838-843 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T23 | 838-843 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T24 | 838-843 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T25 | 838-843 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T5 | 49-55 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T6 | 430-433 | Chemical | denotes | CTA | http://purl.obolibrary.org/obo/CHEBI_17217 |
| T7 | 452-454 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T10 | 620-622 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T11 | 410-428 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
| T12 | 745-760 | Phenotype | denotes | pulmonary edema | http://purl.obolibrary.org/obo/HP_0100598 |
| T13 | 871-883 | Phenotype | denotes | pneumothorax | http://purl.obolibrary.org/obo/HP_0002107 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20 | 0-99 | Sentence | denotes | The patient was then weaned and able to maintain oxygen saturation of 93% on 5 L via nasal cannula. |
| T21 | 100-155 | Sentence | denotes | Cell counts and electrolytes were within normal limits. |
| T22 | 156-236 | Sentence | denotes | The patient was negative for Flu A/B and had a negative respiratory viral panel. |
| T23 | 237-314 | Sentence | denotes | Chest X-ray obtained showed nonspecific bibasilar airspace disease (Fig. 1 ). |
| T24 | 315-429 | Sentence | denotes | Of note, the patient's D-dimer was elevated to 2574 and CT imaging was ordered to evaluate for pulmonary embolism. |
| T25 | 430-493 | Sentence | denotes | CTA of the chest with PE protocol revealed bibasilar opacities. |
| T26 | 494-594 | Sentence | denotes | The patient was admitted to the progressive care unit for respiratory support and COVID-19 rule out. |
| T27 | 595-629 | Sentence | denotes | Fig. 1 Chest Radiograph (AP view): |
| T28 | 630-663 | Sentence | denotes | Upper lung emphysematous changes. |
| T29 | 664-806 | Sentence | denotes | Nonspecific bibasal airspace disease which could represent atypical infection or pulmonary edema superimposed on chronic inflammatory changes. |
| T30 | 807-849 | Sentence | denotes | Stable mediastinal contour and heart size. |
| T31 | 850-884 | Sentence | denotes | No large effusion or pneumothorax. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 85-90 | UBERON:0000004 | denotes | nasal |
| T19 | 185-188 | PR:000022673 | denotes | Flu |
| T20 | 212-223 | UBERON:0001004 | denotes | respiratory |
| T21 | 224-229 | NCBITaxon:10239 | denotes | viral |
| T22 | 410-419 | UBERON:0002048 | denotes | pulmonary |
| T23 | 441-446 | UBERON:0001443 | denotes | chest |
| T24 | 552-563 | UBERON:0001004 | denotes | respiratory |
| T25 | 576-584 | SP_7 | denotes | COVID-19 |
| T26 | 636-640 | UBERON:0002048 | denotes | lung |
| T27 | 676-683 | UBERON:0002294 | denotes | bibasal |
| T28 | 684-692 | UBERON:0001005 | denotes | airspace |
| T29 | 745-754 | UBERON:0002048 | denotes | pulmonary |
| T30 | 814-825 | UBERON:0008818 | denotes | mediastinal |
| T31 | 838-843 | UBERON:0000948 | denotes | heart |
| T36067 | 85-90 | UBERON:0000004 | denotes | nasal |
| T43633 | 185-188 | PR:000022673 | denotes | Flu |
| T88278 | 212-223 | UBERON:0001004 | denotes | respiratory |
| T40849 | 224-229 | NCBITaxon:10239 | denotes | viral |
| T95928 | 410-419 | UBERON:0002048 | denotes | pulmonary |
| T1163 | 441-446 | UBERON:0001443 | denotes | chest |
| T88354 | 552-563 | UBERON:0001004 | denotes | respiratory |
| T24149 | 576-584 | SP_7 | denotes | COVID-19 |
| T71521 | 636-640 | UBERON:0002048 | denotes | lung |
| T22121 | 676-683 | UBERON:0002294 | denotes | bibasal |
| T85559 | 684-692 | UBERON:0001005 | denotes | airspace |
| T99625 | 745-754 | UBERON:0002048 | denotes | pulmonary |
| T35124 | 814-825 | UBERON:0008818 | denotes | mediastinal |
| T63692 | 838-843 | UBERON:0000948 | denotes | heart |