PMC:7140597 / 9897-11116 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"128","span":{"begin":284,"end":288},"obj":"Gene"},{"id":"129","span":{"begin":292,"end":296},"obj":"Gene"},{"id":"130","span":{"begin":300,"end":304},"obj":"Gene"},{"id":"131","span":{"begin":308,"end":312},"obj":"Gene"},{"id":"132","span":{"begin":316,"end":320},"obj":"Gene"},{"id":"133","span":{"begin":361,"end":373},"obj":"Gene"},{"id":"134","span":{"begin":210,"end":220},"obj":"Species"},{"id":"135","span":{"begin":466,"end":474},"obj":"CellLine"},{"id":"138","span":{"begin":99,"end":109},"obj":"Species"},{"id":"139","span":{"begin":162,"end":172},"obj":"Species"},{"id":"143","span":{"begin":811,"end":843},"obj":"Gene"},{"id":"144","span":{"begin":845,"end":855},"obj":"Species"},{"id":"145","span":{"begin":857,"end":902},"obj":"Species"},{"id":"148","span":{"begin":1067,"end":1077},"obj":"Chemical"},{"id":"149","span":{"begin":1032,"end":1040},"obj":"CellLine"}],"attributes":[{"id":"A128","pred":"tao:has_database_id","subj":"128","obj":"Gene:55354"},{"id":"A129","pred":"tao:has_database_id","subj":"129","obj":"Gene:55354"},{"id":"A130","pred":"tao:has_database_id","subj":"130","obj":"Gene:55354"},{"id":"A131","pred":"tao:has_database_id","subj":"131","obj":"Gene:55354"},{"id":"A132","pred":"tao:has_database_id","subj":"132","obj":"Gene:55354"},{"id":"A133","pred":"tao:has_database_id","subj":"133","obj":"Gene:43740575"},{"id":"A134","pred":"tao:has_database_id","subj":"134","obj":"Tax:2697049"},{"id":"A135","pred":"tao:has_database_id","subj":"135","obj":"CVCL:U508"},{"id":"A138","pred":"tao:has_database_id","subj":"138","obj":"Tax:2697049"},{"id":"A139","pred":"tao:has_database_id","subj":"139","obj":"Tax:2697049"},{"id":"A143","pred":"tao:has_database_id","subj":"143","obj":"Gene:43740578"},{"id":"A144","pred":"tao:has_database_id","subj":"144","obj":"Tax:2697049"},{"id":"A145","pred":"tao:has_database_id","subj":"145","obj":"Tax:694009"},{"id":"A148","pred":"tao:has_database_id","subj":"148","obj":"MESH:D008715"},{"id":"A149","pred":"tao:has_database_id","subj":"149","obj":"CVCL:U508"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T50","span":{"begin":9,"end":19},"obj":"Body_part"},{"id":"T51","span":{"begin":79,"end":85},"obj":"Body_part"},{"id":"T52","span":{"begin":340,"end":352},"obj":"Body_part"},{"id":"T53","span":{"begin":910,"end":920},"obj":"Body_part"},{"id":"T54","span":{"begin":965,"end":972},"obj":"Body_part"},{"id":"T55","span":{"begin":1067,"end":1077},"obj":"Body_part"}],"attributes":[{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A54","pred":"fma_id","subj":"T54","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A55","pred":"fma_id","subj":"T55","obj":"http://purl.org/sig/ont/fma/fma82759"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T29","span":{"begin":99,"end":107},"obj":"Disease"},{"id":"T30","span":{"begin":162,"end":170},"obj":"Disease"},{"id":"T31","span":{"begin":210,"end":218},"obj":"Disease"},{"id":"T32","span":{"begin":845,"end":853},"obj":"Disease"},{"id":"T33","span":{"begin":854,"end":902},"obj":"Disease"},{"id":"T34","span":{"begin":857,"end":890},"obj":"Disease"}],"attributes":[{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T92","span":{"begin":275,"end":278},"obj":"http://purl.obolibrary.org/obo/CLO_0001180"},{"id":"T93","span":{"begin":446,"end":450},"obj":"http://purl.obolibrary.org/obo/CLO_0001547"},{"id":"T94","span":{"begin":493,"end":497},"obj":"http://purl.obolibrary.org/obo/CLO_0001547"},{"id":"T95","span":{"begin":550,"end":555},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T96","span":{"begin":557,"end":561},"obj":"http://purl.obolibrary.org/obo/CLO_0003417"},{"id":"T97","span":{"begin":604,"end":605},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T98","span":{"begin":613,"end":617},"obj":"http://purl.obolibrary.org/obo/CLO_0003417"},{"id":"T99","span":{"begin":660,"end":664},"obj":"http://purl.obolibrary.org/obo/CLO_0001547"},{"id":"T100","span":{"begin":669,"end":673},"obj":"http://purl.obolibrary.org/obo/CLO_0003417"},{"id":"T101","span":{"begin":713,"end":714},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T102","span":{"begin":722,"end":726},"obj":"http://purl.obolibrary.org/obo/CLO_0003417"},{"id":"T103","span":{"begin":766,"end":770},"obj":"http://purl.obolibrary.org/obo/CLO_0001547"},{"id":"T104","span":{"begin":904,"end":905},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T105","span":{"begin":1079,"end":1080},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T20","span":{"begin":9,"end":19},"obj":"Chemical"},{"id":"T21","span":{"begin":15,"end":19},"obj":"Chemical"},{"id":"T22","span":{"begin":340,"end":352},"obj":"Chemical"},{"id":"T23","span":{"begin":910,"end":920},"obj":"Chemical"},{"id":"T24","span":{"begin":910,"end":915},"obj":"Chemical"},{"id":"T25","span":{"begin":916,"end":920},"obj":"Chemical"},{"id":"T26","span":{"begin":965,"end":972},"obj":"Chemical"},{"id":"T27","span":{"begin":1067,"end":1077},"obj":"Chemical"}],"attributes":[{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_33704"},{"id":"A21","pred":"chebi_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A23","pred":"chebi_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A24","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A25","pred":"chebi_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A26","pred":"chebi_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A27","pred":"chebi_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/CHEBI_16811"},{"id":"A28","pred":"chebi_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/CHEBI_64558"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T3","span":{"begin":53,"end":65},"obj":"http://purl.obolibrary.org/obo/GO_0006412"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-sentences","denotations":[{"id":"T70","span":{"begin":0,"end":209},"obj":"Sentence"},{"id":"T71","span":{"begin":210,"end":283},"obj":"Sentence"},{"id":"T72","span":{"begin":284,"end":417},"obj":"Sentence"},{"id":"T73","span":{"begin":418,"end":465},"obj":"Sentence"},{"id":"T74","span":{"begin":466,"end":512},"obj":"Sentence"},{"id":"T75","span":{"begin":513,"end":567},"obj":"Sentence"},{"id":"T76","span":{"begin":568,"end":576},"obj":"Sentence"},{"id":"T77","span":{"begin":577,"end":623},"obj":"Sentence"},{"id":"T78","span":{"begin":624,"end":632},"obj":"Sentence"},{"id":"T79","span":{"begin":633,"end":679},"obj":"Sentence"},{"id":"T80","span":{"begin":680,"end":732},"obj":"Sentence"},{"id":"T81","span":{"begin":733,"end":785},"obj":"Sentence"},{"id":"T82","span":{"begin":786,"end":903},"obj":"Sentence"},{"id":"T83","span":{"begin":904,"end":1078},"obj":"Sentence"},{"id":"T84","span":{"begin":1079,"end":1187},"obj":"Sentence"},{"id":"T85","span":{"begin":1188,"end":1219},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T99","span":{"begin":79,"end":85},"obj":"SO:0001026"},{"id":"T100","span":{"begin":99,"end":109},"obj":"SP_7"},{"id":"T101","span":{"begin":162,"end":172},"obj":"SP_7"},{"id":"T102","span":{"begin":786,"end":789},"obj":"SO:0000236"},{"id":"T103","span":{"begin":791,"end":809},"obj":"SO:0000236"},{"id":"T104","span":{"begin":819,"end":822},"obj":"SO:0000236"},{"id":"T105","span":{"begin":845,"end":855},"obj":"SP_7"},{"id":"T106","span":{"begin":857,"end":869},"obj":"SP_10"},{"id":"T107","span":{"begin":870,"end":881},"obj":"SP_10;UBERON:0001004"},{"id":"T108","span":{"begin":882,"end":902},"obj":"SP_10"},{"id":"T14581","span":{"begin":79,"end":85},"obj":"SO:0001026"},{"id":"T231","span":{"begin":99,"end":109},"obj":"SP_7"},{"id":"T98823","span":{"begin":162,"end":172},"obj":"SP_7"},{"id":"T84277","span":{"begin":786,"end":789},"obj":"SO:0000236"},{"id":"T50006","span":{"begin":791,"end":809},"obj":"SO:0000236"},{"id":"T79281","span":{"begin":819,"end":822},"obj":"SO:0000236"},{"id":"T37798","span":{"begin":845,"end":855},"obj":"SP_7"},{"id":"T88846","span":{"begin":857,"end":869},"obj":"SP_10"},{"id":"T87127","span":{"begin":870,"end":881},"obj":"SP_10;UBERON:0001004"},{"id":"T28697","span":{"begin":882,"end":902},"obj":"SP_10"}],"text":"Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences)\nSARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204\nORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein\nNC_045512 (China) F G L A P Q D G R G\nMN908947 (China) F G L A P Q D G R G\nEPI_ISL:412972 (Mexico) F G L G L -c G G K R\nEPI_ISL: 412912 (Germany) F S L A L Q G G K R\nEPI_ISL: 406862 (Germany) F G L A P Q G G R G\nEPI_ISL_412973 (Italy) F G L A L Q G G R G\nEPI_ISL_412974 (Italy) F G F A P Q D V R G\nORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus.\na The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine.\nb The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974).\nc -: possible sequencing error."}