PMC:7140597 / 9897-11116
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 128 | 284-288 | Gene | denotes | ORF1 | Gene:55354 |
| 129 | 292-296 | Gene | denotes | ORF1 | Gene:55354 |
| 130 | 300-304 | Gene | denotes | ORF1 | Gene:55354 |
| 131 | 308-312 | Gene | denotes | ORF1 | Gene:55354 |
| 132 | 316-320 | Gene | denotes | ORF1 | Gene:55354 |
| 133 | 361-373 | Gene | denotes | Nucleocapsid | Gene:43740575 |
| 134 | 210-220 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 135 | 466-474 | CellLine | denotes | MN908947 | CVCL:U508 |
| 138 | 99-109 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 139 | 162-172 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 143 | 811-843 | Gene | denotes | ORF1ab: ORF encoding polyprotein | Gene:43740578 |
| 144 | 845-855 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 145 | 857-902 | Species | denotes | severe acute respiratory syndrome coronavirus | Tax:694009 |
| 148 | 1067-1077 | Chemical | denotes | methionine | MESH:D008715 |
| 149 | 1032-1040 | CellLine | denotes | MN908947 | CVCL:U508 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T50 | 9-19 | Body_part | denotes | Amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T51 | 79-85 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T52 | 340-352 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T53 | 910-920 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T54 | 965-972 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T55 | 1067-1077 | Body_part | denotes | methionine | http://purl.org/sig/ont/fma/fma82759 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T29 | 99-107 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T30 | 162-170 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T31 | 210-218 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T32 | 845-853 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T33 | 854-902 | Disease | denotes | 2: severe acute respiratory syndrome coronavirus | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T34 | 857-890 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T92 | 275-278 | http://purl.obolibrary.org/obo/CLO_0001180 | denotes | 203 |
| T93 | 446-450 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | A P |
| T94 | 493-497 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | A P |
| T95 | 550-555 | http://purl.obolibrary.org/obo/CL_0000453 | denotes | L -c |
| T96 | 557-561 | http://purl.obolibrary.org/obo/CLO_0003417 | denotes | G G |
| T97 | 604-605 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T98 | 613-617 | http://purl.obolibrary.org/obo/CLO_0003417 | denotes | G G |
| T99 | 660-664 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | A P |
| T100 | 669-673 | http://purl.obolibrary.org/obo/CLO_0003417 | denotes | G G |
| T101 | 713-714 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T102 | 722-726 | http://purl.obolibrary.org/obo/CLO_0003417 | denotes | G G |
| T103 | 766-770 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | A P |
| T104 | 904-905 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T105 | 1079-1080 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T20 | 9-19 | Chemical | denotes | Amino acid | http://purl.obolibrary.org/obo/CHEBI_33704 |
| T21 | 15-19 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T22 | 340-352 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T23 | 910-920 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T24 | 910-915 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T25 | 916-920 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T26 | 965-972 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T27 | 1067-1077 | Chemical | denotes | methionine | http://purl.obolibrary.org/obo/CHEBI_16811|http://purl.obolibrary.org/obo/CHEBI_64558 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 53-65 | http://purl.obolibrary.org/obo/GO_0006412 | denotes | translations |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 0-209 | Sentence | denotes | Table 2 Amino acid variationsa deduced by comparing translations of two whole genome sequences of SARS-CoV-2 characterised in this studyb with those of selected SARS-CoV-2 sequences (n = 7 compared sequences) |
| T71 | 210-283 | Sentence | denotes | SARS-CoV-2 strains 924 3334 3606 4314 4704 5170 614 251 203 204 |
| T72 | 284-417 | Sentence | denotes | ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab ORF1ab Surface glycoprotein ORF3a Nucleocapsid phosphoprotein Nucleocapsid phosphoprotein |
| T73 | 418-465 | Sentence | denotes | NC_045512 (China) F G L A P Q D G R G |
| T74 | 466-512 | Sentence | denotes | MN908947 (China) F G L A P Q D G R G |
| T75 | 513-567 | Sentence | denotes | EPI_ISL:412972 (Mexico) F G L G L -c G G K R |
| T76 | 568-576 | Sentence | denotes | EPI_ISL: |
| T77 | 577-623 | Sentence | denotes | 412912 (Germany) F S L A L Q G G K R |
| T78 | 624-632 | Sentence | denotes | EPI_ISL: |
| T79 | 633-679 | Sentence | denotes | 406862 (Germany) F G L A P Q G G R G |
| T80 | 680-732 | Sentence | denotes | EPI_ISL_412973 (Italy) F G L A L Q G G R G |
| T81 | 733-785 | Sentence | denotes | EPI_ISL_412974 (Italy) F G F A P Q D V R G |
| T82 | 786-903 | Sentence | denotes | ORF: open reading frame; ORF1ab: ORF encoding polyprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus. |
| T83 | 904-1078 | Sentence | denotes | a The amino acid positions refer to those in each respective protein sequence of the Wuhan reference (GenBank accession number: MN908947), starting from the first methionine. |
| T84 | 1079-1187 | Sentence | denotes | b The two sequences characterised in this study are the ones from Italy (EPI_ISL_412973 and EPI_ISL_412974). |
| T85 | 1188-1219 | Sentence | denotes | c -: possible sequencing error. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 79-85 | SO:0001026 | denotes | genome |
| T100 | 99-109 | SP_7 | denotes | SARS-CoV-2 |
| T101 | 162-172 | SP_7 | denotes | SARS-CoV-2 |
| T102 | 786-789 | SO:0000236 | denotes | ORF |
| T103 | 791-809 | SO:0000236 | denotes | open reading frame |
| T104 | 819-822 | SO:0000236 | denotes | ORF |
| T105 | 845-855 | SP_7 | denotes | SARS-CoV-2 |
| T106 | 857-869 | SP_10 | denotes | severe acute |
| T107 | 870-881 | SP_10;UBERON:0001004 | denotes | respiratory |
| T108 | 882-902 | SP_10 | denotes | syndrome coronavirus |
| T14581 | 79-85 | SO:0001026 | denotes | genome |
| T231 | 99-109 | SP_7 | denotes | SARS-CoV-2 |
| T98823 | 162-172 | SP_7 | denotes | SARS-CoV-2 |
| T84277 | 786-789 | SO:0000236 | denotes | ORF |
| T50006 | 791-809 | SO:0000236 | denotes | open reading frame |
| T79281 | 819-822 | SO:0000236 | denotes | ORF |
| T37798 | 845-855 | SP_7 | denotes | SARS-CoV-2 |
| T88846 | 857-869 | SP_10 | denotes | severe acute |
| T87127 | 870-881 | SP_10;UBERON:0001004 | denotes | respiratory |
| T28697 | 882-902 | SP_10 | denotes | syndrome coronavirus |