
PMC:7128678 / 29988-30679
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
938 | 116-117 | Gene | denotes | S | Gene:43740568 |
939 | 105-115 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
940 | 408-418 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
941 | 60-71 | Chemical | denotes | ganglioside | MESH:D005732 |
942 | 132-143 | Chemical | denotes | ganglioside | MESH:D005732 |
943 | 219-235 | Chemical | denotes | basic amino acid | MESH:D024361 |
944 | 335-346 | Chemical | denotes | ganglioside | MESH:D005732 |
945 | 626-638 | Chemical | denotes | gangliosides | MESH:D005732 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T670 | 60-71 | CHEBI:5386;CHEBI:5386 | denotes | ganglioside |
T671 | 80-86 | SO:0000417 | denotes | domain |
T672 | 105-115 | SP_7 | denotes | SARS-CoV-2 |
T673 | 116-125 | PG_1 | denotes | S protein |
T674 | 132-143 | CHEBI:28892;CHEBI:28892 | denotes | ganglioside |
T675 | 152-158 | SO:0000417 | denotes | domain |
T676 | 335-346 | CHEBI:28892;CHEBI:28892 | denotes | ganglioside |
T677 | 355-362 | SO:0000417 | denotes | domains |
T678 | 408-418 | SP_7 | denotes | SARS-CoV-2 |
T679 | 496-502 | SO:0000417 | denotes | domain |
T680 | 526-533 | SO:0000417 | denotes | domains |
T681 | 626-638 | CHEBI:5386;CHEBI:5386 | denotes | gangliosides |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T210 | 60-71 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T211 | 118-125 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T212 | 132-143 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T213 | 225-235 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T214 | 272-282 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T215 | 335-346 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T216 | 626-638 | Body_part | denotes | gangliosides | http://purl.org/sig/ont/fma/fma82816 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T145 | 94-97 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T147 | 105-113 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T148 | 408-416 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T245 | 31-34 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T246 | 46-47 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T247 | 171-172 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T248 | 225-244 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino acid residues |
T249 | 225-244 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino acid residues |
T250 | 256-257 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T251 | 269-271 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
T252 | 272-291 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino acid residues |
T253 | 272-291 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino acid residues |
T254 | 297-300 | http://purl.obolibrary.org/obo/CLO_0001002 | denotes | 162 |
T255 | 428-437 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organized |
T256 | 477-478 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T698 | 60-71 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T699 | 118-125 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T700 | 132-143 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T701 | 225-235 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T702 | 225-230 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T703 | 231-235 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T704 | 272-282 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T705 | 272-277 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T706 | 278-282 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T707 | 335-346 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T708 | 626-638 | Chemical | denotes | gangliosides | http://purl.obolibrary.org/obo/CHEBI_28892 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T234 | 0-126 | Sentence | denotes | This molecular modelling study has identified a new type of ganglioside-binding domain in the NTD of the SARS-CoV-2 S protein. |
T235 | 127-245 | Sentence | denotes | This ganglioside-binding domain consists of a large flat interface enriched in aromatic and basic amino acid residues. |
T236 | 246-390 | Sentence | denotes | It covers a stretch of 52 amino acid residues (111–162), which is longer than all linear ganglioside-binding domains characterized to date [29]. |
T237 | 391-544 | Sentence | denotes | However, the new SARS-CoV-2 motif is organized into three distinct regions, including a central aromatic domain and two terminal basic domains (Fig. 10). |
T238 | 545-691 | Sentence | denotes | Thus, this motif displays the typical features that determine optimal binding to gangliosides (i.e. CH-π stacking and electrostatic interactions). |