PMC:7128678 / 18720-19203 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7128678","sourcedb":"PMC","sourceid":"7128678","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7128678","text":"Fig. 6 Molecular complex between the N-terminal domain (NTD) of SARS-CoV-2 spike protein and a single GM1 ganglioside. The NTD is represented in ribbons superposed with a transparent surface rendering (light green). Two symmetric views of the complex are shown (a,b). The amino acid residues Q-134 to D-138 located in the centre of the ganglioside-binding domain are represented as green spheres. The saccharide part of the ganglioside forms a landing surface for the tip of the NTD.","divisions":[{"label":"label","span":{"begin":0,"end":6}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"516","span":{"begin":75,"end":80},"obj":"Gene"},{"id":"517","span":{"begin":64,"end":74},"obj":"Species"},{"id":"518","span":{"begin":102,"end":117},"obj":"Chemical"},{"id":"519","span":{"begin":336,"end":347},"obj":"Chemical"},{"id":"520","span":{"begin":401,"end":411},"obj":"Chemical"},{"id":"521","span":{"begin":424,"end":435},"obj":"Chemical"}],"attributes":[{"id":"A516","pred":"tao:has_database_id","subj":"516","obj":"Gene:43740568"},{"id":"A517","pred":"tao:has_database_id","subj":"517","obj":"Tax:2697049"},{"id":"A518","pred":"tao:has_database_id","subj":"518","obj":"MESH:D005677"},{"id":"A519","pred":"tao:has_database_id","subj":"519","obj":"MESH:D005732"},{"id":"A520","pred":"tao:has_database_id","subj":"520","obj":"MESH:D002241"},{"id":"A521","pred":"tao:has_database_id","subj":"521","obj":"MESH:D005732"},{"subj":"516","pred":"source","obj":"LitCovid-PubTator"},{"subj":"517","pred":"source","obj":"LitCovid-PubTator"},{"subj":"518","pred":"source","obj":"LitCovid-PubTator"},{"subj":"519","pred":"source","obj":"LitCovid-PubTator"},{"subj":"520","pred":"source","obj":"LitCovid-PubTator"},{"subj":"521","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T391","span":{"begin":17,"end":24},"obj":"GO:0032991"},{"id":"T392","span":{"begin":48,"end":54},"obj":"SO:0000417"},{"id":"T393","span":{"begin":64,"end":74},"obj":"SP_7"},{"id":"T394","span":{"begin":106,"end":117},"obj":"CHEBI:16856;CHEBI:16856"},{"id":"T395","span":{"begin":243,"end":250},"obj":"GO:0032991"},{"id":"T396","span":{"begin":336,"end":347},"obj":"CHEBI:28892;CHEBI:28892"},{"id":"T397","span":{"begin":356,"end":362},"obj":"SO:0000417"},{"id":"T398","span":{"begin":401,"end":411},"obj":"CHEBI:32111;CHEBI:32111"},{"id":"T399","span":{"begin":424,"end":435},"obj":"CHEBI:5386;CHEBI:5386"}],"attributes":[{"subj":"T391","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T392","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T393","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T394","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T395","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T396","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T397","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T398","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T399","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T106","span":{"begin":81,"end":88},"obj":"Body_part"},{"id":"T107","span":{"begin":106,"end":117},"obj":"Body_part"},{"id":"T108","span":{"begin":272,"end":282},"obj":"Body_part"},{"id":"T109","span":{"begin":336,"end":347},"obj":"Body_part"},{"id":"T110","span":{"begin":424,"end":435},"obj":"Body_part"}],"attributes":[{"id":"A106","pred":"fma_id","subj":"T106","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A107","pred":"fma_id","subj":"T107","obj":"http://purl.org/sig/ont/fma/fma82816"},{"id":"A108","pred":"fma_id","subj":"T108","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A109","pred":"fma_id","subj":"T109","obj":"http://purl.org/sig/ont/fma/fma82816"},{"id":"A110","pred":"fma_id","subj":"T110","obj":"http://purl.org/sig/ont/fma/fma82816"},{"subj":"T106","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T107","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T108","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T109","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T110","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T12","span":{"begin":468,"end":471},"obj":"Body_part"}],"attributes":[{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_2001840"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T66","span":{"begin":56,"end":59},"obj":"Disease"},{"id":"T68","span":{"begin":64,"end":72},"obj":"Disease"},{"id":"T69","span":{"begin":123,"end":126},"obj":"Disease"},{"id":"T71","span":{"begin":479,"end":482},"obj":"Disease"}],"attributes":[{"id":"A66","pred":"mondo_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A67","pred":"mondo_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A68","pred":"mondo_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A69","pred":"mondo_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A70","pred":"mondo_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A71","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A72","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"subj":"T66","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T68","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T69","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T71","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T133","span":{"begin":93,"end":94},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T134","span":{"begin":169,"end":170},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T135","span":{"begin":262,"end":263},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T136","span":{"begin":264,"end":265},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T137","span":{"begin":272,"end":291},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T138","span":{"begin":272,"end":291},"obj":"http://purl.obolibrary.org/obo/PR_000036907"},{"id":"T139","span":{"begin":442,"end":443},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T133","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T134","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T135","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T136","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T137","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T138","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T139","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T381","span":{"begin":81,"end":88},"obj":"Chemical"},{"id":"T382","span":{"begin":102,"end":117},"obj":"Chemical"},{"id":"T383","span":{"begin":102,"end":105},"obj":"Chemical"},{"id":"T385","span":{"begin":106,"end":117},"obj":"Chemical"},{"id":"T386","span":{"begin":202,"end":213},"obj":"Chemical"},{"id":"T388","span":{"begin":272,"end":282},"obj":"Chemical"},{"id":"T389","span":{"begin":272,"end":277},"obj":"Chemical"},{"id":"T390","span":{"begin":278,"end":282},"obj":"Chemical"},{"id":"T391","span":{"begin":336,"end":347},"obj":"Chemical"},{"id":"T392","span":{"begin":401,"end":411},"obj":"Chemical"},{"id":"T393","span":{"begin":424,"end":435},"obj":"Chemical"}],"attributes":[{"id":"A381","pred":"chebi_id","subj":"T381","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A382","pred":"chebi_id","subj":"T382","obj":"http://purl.obolibrary.org/obo/CHEBI_61048"},{"id":"A383","pred":"chebi_id","subj":"T383","obj":"http://purl.obolibrary.org/obo/CHEBI_18216"},{"id":"A384","pred":"chebi_id","subj":"T383","obj":"http://purl.obolibrary.org/obo/CHEBI_73110"},{"id":"A385","pred":"chebi_id","subj":"T385","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"id":"A386","pred":"chebi_id","subj":"T386","obj":"http://purl.obolibrary.org/obo/CHEBI_87065"},{"id":"A387","pred":"chebi_id","subj":"T386","obj":"http://purl.obolibrary.org/obo/CHEBI_87649"},{"id":"A388","pred":"chebi_id","subj":"T388","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A389","pred":"chebi_id","subj":"T389","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A390","pred":"chebi_id","subj":"T390","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A391","pred":"chebi_id","subj":"T391","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"id":"A392","pred":"chebi_id","subj":"T392","obj":"http://purl.obolibrary.org/obo/CHEBI_16646"},{"id":"A393","pred":"chebi_id","subj":"T393","obj":"http://purl.obolibrary.org/obo/CHEBI_28892"},{"subj":"T381","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T382","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T383","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T385","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T386","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T388","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T389","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T390","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T391","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T392","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T393","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T20","span":{"begin":102,"end":105},"obj":"GlycoEpitope"}],"attributes":[{"id":"A20","pred":"glyco_epitope_db_id","subj":"T20","obj":"http://www.glycoepitope.jp/epitopes/EP0050"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-GlycoEpitope"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T132","span":{"begin":0,"end":118},"obj":"Sentence"},{"id":"T133","span":{"begin":119,"end":215},"obj":"Sentence"},{"id":"T134","span":{"begin":216,"end":267},"obj":"Sentence"},{"id":"T135","span":{"begin":268,"end":396},"obj":"Sentence"},{"id":"T136","span":{"begin":397,"end":483},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T132","pred":"source","obj":"LitCovid-sentences"},{"subj":"T133","pred":"source","obj":"LitCovid-sentences"},{"subj":"T134","pred":"source","obj":"LitCovid-sentences"},{"subj":"T135","pred":"source","obj":"LitCovid-sentences"},{"subj":"T136","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93e0ec","default":true},{"id":"LitCovid-PMC-OGER-BB","color":"#ecdd93"},{"id":"LitCovid-PD-FMA-UBERON","color":"#c393ec"},{"id":"LitCovid-PD-UBERON","color":"#93eca9"},{"id":"LitCovid-PD-MONDO","color":"#ec9396"},{"id":"LitCovid-PD-CLO","color":"#93b0ec"},{"id":"LitCovid-PD-CHEBI","color":"#caec93"},{"id":"LitCovid-PD-GlycoEpitope","color":"#ec93e4"},{"id":"LitCovid-sentences","color":"#93ecda"}]}]}}