PMC:7128678 / 18720-19203
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 516 | 75-80 | Gene | denotes | spike | Gene:43740568 |
| 517 | 64-74 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 518 | 102-117 | Chemical | denotes | GM1 ganglioside | MESH:D005677 |
| 519 | 336-347 | Chemical | denotes | ganglioside | MESH:D005732 |
| 520 | 401-411 | Chemical | denotes | saccharide | MESH:D002241 |
| 521 | 424-435 | Chemical | denotes | ganglioside | MESH:D005732 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T391 | 17-24 | GO:0032991 | denotes | complex |
| T392 | 48-54 | SO:0000417 | denotes | domain |
| T393 | 64-74 | SP_7 | denotes | SARS-CoV-2 |
| T394 | 106-117 | CHEBI:16856;CHEBI:16856 | denotes | ganglioside |
| T395 | 243-250 | GO:0032991 | denotes | complex |
| T396 | 336-347 | CHEBI:28892;CHEBI:28892 | denotes | ganglioside |
| T397 | 356-362 | SO:0000417 | denotes | domain |
| T398 | 401-411 | CHEBI:32111;CHEBI:32111 | denotes | saccharide |
| T399 | 424-435 | CHEBI:5386;CHEBI:5386 | denotes | ganglioside |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T106 | 81-88 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T107 | 106-117 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
| T108 | 272-282 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T109 | 336-347 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
| T110 | 424-435 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T12 | 468-471 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T66 | 56-59 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T68 | 64-72 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T69 | 123-126 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T71 | 479-482 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T133 | 93-94 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T134 | 169-170 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T135 | 262-263 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T136 | 264-265 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T137 | 272-291 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino acid residues |
| T138 | 272-291 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino acid residues |
| T139 | 442-443 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T381 | 81-88 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T382 | 102-117 | Chemical | denotes | GM1 ganglioside | http://purl.obolibrary.org/obo/CHEBI_61048 |
| T383 | 102-105 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_73110 |
| T385 | 106-117 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T386 | 202-213 | Chemical | denotes | light green | http://purl.obolibrary.org/obo/CHEBI_87065|http://purl.obolibrary.org/obo/CHEBI_87649 |
| T388 | 272-282 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T389 | 272-277 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T390 | 278-282 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T391 | 336-347 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T392 | 401-411 | Chemical | denotes | saccharide | http://purl.obolibrary.org/obo/CHEBI_16646 |
| T393 | 424-435 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T20 | 102-105 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T132 | 0-118 | Sentence | denotes | Fig. 6 Molecular complex between the N-terminal domain (NTD) of SARS-CoV-2 spike protein and a single GM1 ganglioside. |
| T133 | 119-215 | Sentence | denotes | The NTD is represented in ribbons superposed with a transparent surface rendering (light green). |
| T134 | 216-267 | Sentence | denotes | Two symmetric views of the complex are shown (a,b). |
| T135 | 268-396 | Sentence | denotes | The amino acid residues Q-134 to D-138 located in the centre of the ganglioside-binding domain are represented as green spheres. |
| T136 | 397-483 | Sentence | denotes | The saccharide part of the ganglioside forms a landing surface for the tip of the NTD. |