> top > docs > PMC:7128678 > spans > 18720-19203 > annotations

PMC:7128678 / 18720-19203 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
516 75-80 Gene denotes spike Gene:43740568
517 64-74 Species denotes SARS-CoV-2 Tax:2697049
518 102-117 Chemical denotes GM1 ganglioside MESH:D005677
519 336-347 Chemical denotes ganglioside MESH:D005732
520 401-411 Chemical denotes saccharide MESH:D002241
521 424-435 Chemical denotes ganglioside MESH:D005732

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T391 17-24 GO:0032991 denotes complex
T392 48-54 SO:0000417 denotes domain
T393 64-74 SP_7 denotes SARS-CoV-2
T394 106-117 CHEBI:16856;CHEBI:16856 denotes ganglioside
T395 243-250 GO:0032991 denotes complex
T396 336-347 CHEBI:28892;CHEBI:28892 denotes ganglioside
T397 356-362 SO:0000417 denotes domain
T398 401-411 CHEBI:32111;CHEBI:32111 denotes saccharide
T399 424-435 CHEBI:5386;CHEBI:5386 denotes ganglioside

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T106 81-88 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T107 106-117 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T108 272-282 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T109 336-347 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T110 424-435 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T12 468-471 Body_part denotes tip http://purl.obolibrary.org/obo/UBERON_2001840

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T66 56-59 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T68 64-72 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 123-126 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T71 479-482 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T133 93-94 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 169-170 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 262-263 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 264-265 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T137 272-291 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T138 272-291 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T139 442-443 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T381 81-88 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T382 102-117 Chemical denotes GM1 ganglioside http://purl.obolibrary.org/obo/CHEBI_61048
T383 102-105 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_73110
T385 106-117 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T386 202-213 Chemical denotes light green http://purl.obolibrary.org/obo/CHEBI_87065|http://purl.obolibrary.org/obo/CHEBI_87649
T388 272-282 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T389 272-277 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T390 278-282 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T391 336-347 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T392 401-411 Chemical denotes saccharide http://purl.obolibrary.org/obo/CHEBI_16646
T393 424-435 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T20 102-105 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T132 0-118 Sentence denotes Fig. 6 Molecular complex between the N-terminal domain (NTD) of SARS-CoV-2 spike protein and a single GM1 ganglioside.
T133 119-215 Sentence denotes The NTD is represented in ribbons superposed with a transparent surface rendering (light green).
T134 216-267 Sentence denotes Two symmetric views of the complex are shown (a,b).
T135 268-396 Sentence denotes The amino acid residues Q-134 to D-138 located in the centre of the ganglioside-binding domain are represented as green spheres.
T136 397-483 Sentence denotes The saccharide part of the ganglioside forms a landing surface for the tip of the NTD.