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PMC:7128678 / 13861-14376 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
349 488-501 Gene denotes CLQ-OH/CLQ-OH
362 63-71 Chemical denotes ceramide MESH:D002518
363 72-77 Chemical denotes sugar MESH:D000073893
364 100-108 Chemical denotes nitrogen MESH:D009584
365 152-163 Chemical denotes ganglioside MESH:D005732
366 206-209 Chemical denotes GM1 MESH:D005677
367 320-323 Chemical denotes GM1 MESH:D005677
368 351-354 Chemical denotes GM1 MESH:D005677
369 398-404 Chemical denotes CLQ-OH

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T289 63-71 CHEBI:17761;CHEBI:17761 denotes ceramide
T290 109-114 CHEBI:33250;CHEBI:33250 denotes atoms
T291 133-139 CHEBI:37527;CHEBI:37527 denotes acidic
T292 152-163 CHEBI:5386;CHEBI:5386 denotes ganglioside
T293 210-219 GO:0032991 denotes complexed
T294 248-257 CHEBI:36357;CHEBI:36357 denotes molecules
T295 332-341 CHEBI:36357;CHEBI:36357 denotes molecules
T296 355-363 CHEBI:36357;CHEBI:36357 denotes molecule
T297 405-414 CHEBI:36357;CHEBI:36357 denotes molecules

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T63 72-77 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T64 152-163 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T94 78-86 http://purl.obolibrary.org/obo/UBERON_0007651 denotes junction

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T255 63-71 Chemical denotes ceramide http://purl.obolibrary.org/obo/CHEBI_17761|http://purl.obolibrary.org/obo/CHEBI_52639
T257 100-108 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T258 109-114 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T259 152-163 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T260 206-209 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T263 248-257 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T264 320-323 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T267 332-341 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T268 351-354 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T271 355-363 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T272 405-414 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T11 206-209 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T12 320-323 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T13 351-354 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T103 0-515 Sentence denotes In this case, the aromatic cycles of CLQ are positioned at the ceramide–sugar junction, whereas the nitrogen atoms interact with the acidic part of the ganglioside (not illustrated). (d,e) Surface views of GM1 complexed with one (d) or two (e) CLQ molecules (both in blue), illustrating the geometric complementarity of GM1 and CLQ molecules. (f) One GM1 molecule can also accommodate two distinct CLQ-OH molecules simultaneously, after slight rearrangement allowing increased fit due to CLQ-OH/CLQ-OH interactions.