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PMC:7127067 / 13620-15422 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T43 114-120 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T44 265-275 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T45 1581-1585 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T46 1651-1661 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T110 72-80 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T111 134-142 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 421-429 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T113 463-471 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 463-467 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 513-521 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T116 513-517 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T117 628-636 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 690-698 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T119 690-694 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T120 750-758 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T121 903-911 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T122 1034-1042 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T123 1074-1082 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T124 1074-1078 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T125 1163-1171 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T126 1269-1277 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T127 1488-1496 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T128 1497-1507 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T129 1730-1738 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 1730-1734 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T101 38-50 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organisation
T102 57-60 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T103 84-85 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 110-113 http://purl.obolibrary.org/obo/CLO_0050884 denotes Ten
T105 157-158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 366-367 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 548-552 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T108 713-719 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T109 721-725 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T110 736-743 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T111 828-834 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T112 839-842 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T113 918-919 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 1116-1117 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 1151-1157 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T116 1199-1202 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T117 1284-1287 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T118 1315-1316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 1367-1368 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 1382-1388 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T121 1421-1427 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T122 1470-1476 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T123 1530-1537 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T124 1543-1544 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 1581-1585 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T126 1598-1599 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 1621-1624 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T128 1762-1769 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 95-100 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T9 265-275 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T10 372-376 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T11 1608-1617 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T12 1651-1661 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T13 1651-1656 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T14 1657-1661 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T96 0-24 Sentence denotes 5 Phylogenetic analysis
T97 25-109 Sentence denotes World Health Organisation (WHO) has classified COVID-19 as a β CoV of group 2B [23].
T98 110-222 Sentence denotes Ten genome sequences of COVID-19 obtained from a total of nine patients exhibited 99.98% sequence identity [19].
T99 223-392 Sentence denotes Another study showed there was 99.8–99.9% nucleotide identity in isolates from five patients and the sequence results revealed the presence of a new beta-CoV strain [5].
T100 393-558 Sentence denotes The genetic sequence of the COVID-19 showed more than 80% identity to SARS-CoV and 50% to the MERS-CoV [5,19], and both SARS-CoV and MERS-CoV originate in bats [24].
T101 559-749 Sentence denotes Thus, the evidence from the phylogenetic analysis indicates that the COVID-19 belongs to the genus betacoronavirus, which includes SARS-CoV, that infects humans, bats, and wild animals [25].
T102 750-898 Sentence denotes COVID-19 represents the seventh member of the coronavirus family that infects humans and has been classified under the orthocoronavirinae subfamily.
T103 899-964 Sentence denotes The COVID-19 forms a clade within the subgenus sarbecovirus [25].
T104 965-1158 Sentence denotes Based on the genetic sequence identity and the phylogenetic reports, COVID-19 is sufficiently different from SARS-CoV and it can thus be considered as a new betacoronavirus that infects humans.
T105 1159-1224 Sentence denotes The COVID-19 most likely developed from bat origin coronaviruses.
T106 1225-1513 Sentence denotes Another piece of evidence that supports the COVID-19 is of bat origin is the existence of a high degree of homology of the ACE2 receptor from a diversity of animal species, thus implicating these animal species as possible intermediate hosts or animal models for COVID-19 infections [20].
T107 1514-1637 Sentence denotes Moreover, these viruses have a single intact open reading frame on gene 8, which is a further indicator of bat-origin CoVs.
T108 1638-1802 Sentence denotes However, the amino acid sequence of the tentative receptor-binding domain resembles that of SARS-CoV, indicating that these viruses might use the same receptor [5].

2_test

Id Subject Object Predicate Lexical cue
32113704-31953166-131566401 105-107 31953166 denotes 23
32113704-31953166-131566401 105-107 31953166 denotes 23
32113704-30531947-131566402 554-556 30531947 denotes 24
32113704-30531947-131566402 554-556 30531947 denotes 24
32113704-31953166-55638574 105-107 31953166 denotes 23
32113704-31953166-55638574 105-107 31953166 denotes 23
32113704-32007145-55638575 218-220 32007145 denotes 19
32113704-32007145-55638575 218-220 32007145 denotes 19
32113704-32007145-55638576 499-501 32007145 denotes 19
32113704-32007145-55638576 499-501 32007145 denotes 19
32113704-30531947-55638577 554-556 30531947 denotes 24
32113704-30531947-55638577 554-556 30531947 denotes 24

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
491 86-91 Species denotes β CoV Tax:694002
492 173-181 Species denotes patients Tax:9606
493 307-315 Species denotes patients Tax:9606
494 372-380 Species denotes beta-CoV Tax:694002
495 463-471 Species denotes SARS-CoV Tax:694009
496 487-495 Species denotes MERS-CoV Tax:1335626
497 513-521 Species denotes SARS-CoV Tax:694009
498 526-534 Species denotes MERS-CoV Tax:1335626
499 658-673 Species denotes betacoronavirus Tax:694002
500 690-698 Species denotes SARS-CoV Tax:694009
501 713-719 Species denotes humans Tax:9606
502 72-80 Disease denotes COVID-19 MESH:C000657245
503 134-142 Disease denotes COVID-19 MESH:C000657245
504 421-429 Disease denotes COVID-19 MESH:C000657245
505 628-636 Disease denotes COVID-19 MESH:C000657245
522 1348-1352 Gene denotes ACE2 Gene:59272
523 796-807 Species denotes coronavirus Tax:11118
524 828-834 Species denotes humans Tax:9606
525 1074-1082 Species denotes SARS-CoV Tax:694009
526 1122-1137 Species denotes betacoronavirus Tax:694002
527 1151-1157 Species denotes humans Tax:9606
528 1210-1223 Species denotes coronaviruses Tax:11118
529 1632-1636 Species denotes CoVs Tax:11118
530 1730-1738 Species denotes SARS-CoV Tax:694009
531 750-758 Disease denotes COVID-19 MESH:C000657245
532 903-911 Disease denotes COVID-19 MESH:C000657245
533 1034-1042 Disease denotes COVID-19 MESH:C000657245
534 1163-1171 Disease denotes COVID-19 MESH:C000657245
535 1269-1277 Disease denotes COVID-19 MESH:C000657245
536 1488-1496 Disease denotes COVID-19 MESH:C000657245
537 1497-1507 Disease denotes infections MESH:D007239