PMC:7115396 / 2812-3476 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T16","span":{"begin":113,"end":116},"obj":"Body_part"},{"id":"T17","span":{"begin":237,"end":240},"obj":"Body_part"},{"id":"T18","span":{"begin":241,"end":247},"obj":"Body_part"},{"id":"T19","span":{"begin":303,"end":311},"obj":"Body_part"},{"id":"T20","span":{"begin":328,"end":336},"obj":"Body_part"},{"id":"T21","span":{"begin":358,"end":366},"obj":"Body_part"},{"id":"T22","span":{"begin":434,"end":441},"obj":"Body_part"},{"id":"T23","span":{"begin":519,"end":526},"obj":"Body_part"},{"id":"T24","span":{"begin":602,"end":607},"obj":"Body_part"}],"attributes":[{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T13","span":{"begin":29,"end":39},"obj":"Disease"},{"id":"T14","span":{"begin":40,"end":50},"obj":"Disease"}],"attributes":[{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0003781"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T43","span":{"begin":51,"end":56},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T44","span":{"begin":64,"end":65},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T45","span":{"begin":117,"end":122},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T46","span":{"begin":458,"end":460},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T47","span":{"begin":465,"end":467},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T48","span":{"begin":465,"end":467},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T49","span":{"begin":491,"end":493},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T50","span":{"begin":494,"end":496},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T51","span":{"begin":494,"end":496},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T52","span":{"begin":516,"end":518},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T53","span":{"begin":602,"end":607},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T54","span":{"begin":617,"end":619},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T55","span":{"begin":617,"end":619},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T56","span":{"begin":639,"end":647},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T5","span":{"begin":303,"end":311},"obj":"Chemical"},{"id":"T6","span":{"begin":328,"end":336},"obj":"Chemical"},{"id":"T7","span":{"begin":358,"end":366},"obj":"Chemical"},{"id":"T8","span":{"begin":434,"end":441},"obj":"Chemical"},{"id":"T9","span":{"begin":465,"end":467},"obj":"Chemical"},{"id":"T10","span":{"begin":494,"end":496},"obj":"Chemical"},{"id":"T11","span":{"begin":519,"end":526},"obj":"Chemical"},{"id":"T12","span":{"begin":617,"end":619},"obj":"Chemical"}],"attributes":[{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A9","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A11","pred":"chebi_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T2","span":{"begin":577,"end":607},"obj":"http://purl.obolibrary.org/obo/GO_0019062"},{"id":"T3","span":{"begin":639,"end":654},"obj":"http://purl.obolibrary.org/obo/GO_0061025"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-sentences","denotations":[{"id":"T20","span":{"begin":0,"end":220},"obj":"Sentence"},{"id":"T21","span":{"begin":221,"end":427},"obj":"Sentence"},{"id":"T22","span":{"begin":428,"end":511},"obj":"Sentence"},{"id":"T23","span":{"begin":512,"end":664},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T7","span":{"begin":40,"end":50},"obj":"Phenotype"}],"attributes":[{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0012387"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"2_test","denotations":[{"id":"32057575-14676007-143294028","span":{"begin":217,"end":218},"obj":"14676007"},{"id":"32057575-12885925-143294029","span":{"begin":656,"end":657},"obj":"12885925"},{"id":"32057575-17296157-143294030","span":{"begin":661,"end":662},"obj":"17296157"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}

{"project":"LitCovid-PubTator","denotations":[{"id":"54","span":{"begin":29,"end":56},"obj":"Species"},{"id":"55","span":{"begin":176,"end":189},"obj":"Species"},{"id":"56","span":{"begin":58,"end":61},"obj":"Species"},{"id":"57","span":{"begin":251,"end":254},"obj":"Species"}],"attributes":[{"id":"A54","pred":"tao:has_database_id","subj":"54","obj":"Tax:11120"},{"id":"A55","pred":"tao:has_database_id","subj":"55","obj":"Tax:11118"},{"id":"A56","pred":"tao:has_database_id","subj":"56","obj":"Tax:11120"},{"id":"A57","pred":"tao:has_database_id","subj":"57","obj":"Tax:11120"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]."}