PMC:7115396 / 2812-3476
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T16 | 113-116 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T17 | 237-240 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T18 | 241-247 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T19 | 303-311 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T20 | 328-336 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T21 | 358-366 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T22 | 434-441 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T23 | 519-526 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T24 | 602-607 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T13 | 29-39 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T14 | 40-50 | Disease | denotes | bronchitis | http://purl.obolibrary.org/obo/MONDO_0003781 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T43 | 51-56 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T44 | 64-65 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T45 | 117-122 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T46 | 458-460 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T47 | 465-467 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T48 | 465-467 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T49 | 491-493 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T50 | 494-496 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T51 | 494-496 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T52 | 516-518 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T53 | 602-607 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T54 | 617-619 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T55 | 617-619 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T56 | 639-647 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T5 | 303-311 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T6 | 328-336 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T7 | 358-366 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T8 | 434-441 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T9 | 465-467 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T10 | 494-496 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T11 | 519-526 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T12 | 617-619 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 577-607 | http://purl.obolibrary.org/obo/GO_0019062 | denotes | viral attachment to host cells |
| T3 | 639-654 | http://purl.obolibrary.org/obo/GO_0061025 | denotes | membrane fusion |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20 | 0-220 | Sentence | denotes | The causative agent of IB is infectious bronchitis virus (IBV), a non-segmented, positive-sense, single-stranded RNA virus, which belongs to the genus Gammacoronavirus, family Coronaviridae, in the order Nidovirales [4]. |
| T21 | 221-427 | Sentence | denotes | The full length RNA genome of IBV is 27.6 kb in length and encodes non-structural proteins, four accessory proteins, and four structural proteins (spike [S], matrix [M], nucleocapsid [N], and envelope [E]). |
| T22 | 428-511 | Sentence | denotes | The S protein is cleaved into S1 and S2 as two subunits at the S1/S2 cleavage site. |
| T23 | 512-664 | Sentence | denotes | The S1 protein contains the receptor-binding domain and mediates viral attachment to host cells, whereas S2 is responsible for membrane fusion [5], [6]. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T7 | 40-50 | Phenotype | denotes | bronchitis | http://purl.obolibrary.org/obo/HP_0012387 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32057575-14676007-143294028 | 217-218 | 14676007 | denotes | 4 |
| 32057575-12885925-143294029 | 656-657 | 12885925 | denotes | 5 |
| 32057575-17296157-143294030 | 661-662 | 17296157 | denotes | 6 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 54 | 29-56 | Species | denotes | infectious bronchitis virus | Tax:11120 |
| 55 | 176-189 | Species | denotes | Coronaviridae | Tax:11118 |
| 56 | 58-61 | Species | denotes | IBV | Tax:11120 |
| 57 | 251-254 | Species | denotes | IBV | Tax:11120 |