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PMC:7114094 / 3091-4260 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
75 535-541 Gene denotes Orf1ab Gene:43740578
76 766-775 Gene denotes S-protein Gene:43740568
77 894-903 Gene denotes S-protein Gene:43740568
78 80-89 Gene denotes S-protein Gene:43740568
79 23-27 Species denotes nCoV Tax:2697049
80 119-122 Species denotes CoV Tax:11118
81 158-171 Species denotes coronaviruses Tax:11118
82 204-207 Species denotes Cov Tax:11118
83 213-228 Species denotes betacoronavirus Tax:694002
84 230-235 Species denotes β-CoV Tax:694002
85 262-271 Species denotes 2019-nCoV Tax:2697049
86 287-290 Species denotes CoV Tax:11118
87 309-317 Species denotes SARS-CoV Tax:694009
88 362-371 Species denotes HCoV-OC43 Tax:31631
89 403-412 Species denotes HCoV-NL63 Tax:277944
90 427-435 Species denotes HCoV229E Tax:11137
91 450-458 Species denotes MERS-CoV Tax:1335626
92 781-784 Species denotes CoV Tax:11118
93 795-804 Species denotes 2019-nCoV Tax:2697049
94 828-837 Species denotes 2019-nCoV Tax:2697049
95 884-887 Species denotes CoV Tax:11118
96 968-985 Species denotes betacoronaviruses Tax:694002
97 1028-1037 Species denotes 2019-nCoV Tax:2697049
98 473-477 Species denotes HKU1 Tax:290028
99 669-674 Gene denotes furin Gene:5045

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T14 82-89 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T15 542-552 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T16 738-748 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T17 768-775 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 896-903 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 109-113 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 309-317 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 333-337 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T41 53-55 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T42 56-58 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T43 56-58 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T44 125-126 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T45 247-248 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 250-251 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T47 657-658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 707-708 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 812-814 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T50 815-817 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T51 815-817 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T52 1007-1008 http://purl.obolibrary.org/obo/CLO_0001021 denotes b

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 56-58 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T15 82-89 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T16 542-552 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T17 542-547 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T18 548-552 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T19 738-748 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T20 738-743 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T21 744-748 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T22 768-775 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23 815-817 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T24 896-903 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 262-492 Sentence denotes 2019-nCoV (NC_045512.2), CoV-ZXC21 (MG772934), SARS-CoV (NC_004718.3), SARS-like BM4821 (MG772934), HCoV-OC43 (AY391777), HKU9-1 (EF065513), HCoV-NL63 (KF530114.1), HCoV229E (KF514433.1), MERS-CoV (NC019843.3), HKU1 (NC_006577.2).
T26 493-617 Sentence denotes The phylogenetic tree was obtained on the Orf1ab amino acid sequence using the Maximum Likelihood method by Mega X software.
T27 618-823 Sentence denotes Red asterisks indicate the presence of a canonical furin-like cleavage motif at site 1; (B) Alignment of the coding and amino acid sequences of the S-protein from CoV-ZXC21 and 2019-nCoV at the S1/S2 site.
T28 824-867 Sentence denotes The 2019-nCoV-specific sequence is in bold.
T29 868-1169 Sentence denotes The sequence of CoV-ZXC21 S-protein at this position is representative of the sequence of the other betacoronaviruses belonging to lineage b, except the one of 2019-nCoV. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)