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PMC:7113610 / 1300-3714 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
44 1141-1158 Species denotes human coronavirus Tax:694448
45 1099-1132 Disease denotes Structure of respiratory syndrome MESH:D012120
64 13-26 Species denotes Coronaviruses Tax:11118
65 41-54 Species denotes Coronaviridae Tax:11118
66 183-194 Species denotes coronavirus Tax:11118
67 196-209 Species denotes Coronaviruses Tax:11118
68 378-391 Species denotes coronaviruses Tax:11118
69 448-459 Species denotes coronavirus Tax:11118
70 465-510 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
71 512-520 Species denotes SARS-CoV Tax:694009
72 523-527 Species denotes H5N1 Tax:102793
73 541-545 Species denotes H1N1 Tax:114727
74 555-610 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
75 883-891 Species denotes SARS-CoV Tax:694009
76 963-974 Species denotes coronavirus Tax:11118
77 985-1040 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
78 623-634 Disease denotes lung injury MESH:D055370
79 645-680 Disease denotes acute respiratory distress syndrome MESH:D012128
80 682-686 Disease denotes ARDS MESH:D012128
81 703-720 Disease denotes pulmonary failure MESH:D012131
99 1258-1275 Species denotes novel coronavirus Tax:2697049
100 1464-1477 Species denotes coronaviruses Tax:11118
101 1508-1525 Species denotes Wuhan coronavirus Tax:2697049
102 1529-1551 Species denotes 2019 novel coronavirus Tax:2697049
103 1553-1562 Species denotes 2019-nCov Tax:2697049
104 1669-1679 Species denotes SARS-CoV-2 Tax:2697049
105 1744-1747 Species denotes CoV Tax:11118
106 2032-2042 Species denotes SARS-CoV-2 Tax:2697049
107 2063-2066 Species denotes CoV Tax:11118
108 2153-2163 Species denotes SARS-CoV-2 Tax:2697049
109 2262-2267 Species denotes human Tax:9606
110 2268-2281 Species denotes coronaviruses Tax:11118
111 1319-1327 Disease denotes infected MESH:D007239
112 1699-1707 Disease denotes COVID-19 MESH:C000657245
113 1755-1763 Disease denotes infected MESH:D007239
114 1866-1894 Disease denotes corona virus (2019) infected MESH:C000657245
115 2405-2413 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 283-286 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T2 623-627 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 1854-1858 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T4 2124-2131 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 623-627 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T2 1854-1858 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p68640s41 2173-2181 PosReg denotes enhanced

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 465-498 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T22 512-520 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 512-516 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 528-545 Disease denotes influenza A, H1N1 http://purl.obolibrary.org/obo/MONDO_0005460
T25 528-537 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T26 617-634 Disease denotes acute lung injury http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796
T28 628-634 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T29 636-639 Disease denotes ALI http://purl.obolibrary.org/obo/MONDO_0006502
T30 645-680 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T31 651-680 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T32 682-686 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T33 823-856 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T34 858-862 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T35 883-891 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 883-887 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 1669-1677 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 1669-1673 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 1699-1707 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 2032-2040 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 2032-2036 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 2153-2161 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 2153-2157 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 2325-2339 Disease denotes infectiousness http://purl.obolibrary.org/obo/MONDO_0005550
T45 2367-2371 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 2405-2413 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T11 152-157 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 181-182 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 265-266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 290-291 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 538-539 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T16 623-627 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T17 623-627 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T18 751-758 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T19 787-794 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T20 821-822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 928-929 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 1141-1146 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T23 1256-1257 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 1412-1417 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T25 1437-1438 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 1489-1494 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 1635-1642 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T28 1660-1665 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T29 1709-1715 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3], [4
T30 1873-1878 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 2262-2267 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T32 2386-2387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2396-2401 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 106-111 Chemical denotes crown http://purl.obolibrary.org/obo/CHEBI_37409
T8 403-408 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T9 414-418 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T10 424-429 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T11 1455-1460 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T12 1866-1872 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T13 2124-2131 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 0-12 Sentence denotes Introduction
T13 13-87 Sentence denotes Coronaviruses belong to the Coronaviridae family in the Nidovirales order.
T14 88-195 Sentence denotes Corona represents crown-like spikes on the outer surface of the virus; thus, it was named as a coronavirus.
T15 196-360 Sentence denotes Coronaviruses are minute in size (65–125 nm in diameter) and contain a single-stranded RNA as a nucleic material, size ranging from 26 to 32kbs in length (Fig. 1 ).
T16 361-460 Sentence denotes The subgroups of coronaviruses family are alpha (α), beta (β), gamma (γ) and delta (δ) coronavirus.
T17 461-744 Sentence denotes The severe acute respiratory syndrome coronavirus (SARS-CoV), H5N1 influenza A, H1N1 2009 and Middle East respiratory syndrome coronavirus (MERS-CoV) cause acute lung injury (ALI) and acute respiratory distress syndrome (ARDS) which leads to pulmonary failure and result in fatality.
T18 745-922 Sentence denotes These viruses were thought to infect only animals until the world witnessed a severe acute respiratory syndrome (SARS) outbreak caused by SARS-CoV, 2002 in Guangdong, China [1].
T19 923-1091 Sentence denotes Only a decade later, another pathogenic coronavirus, known as Middle East respiratory syndrome coronavirus (MERS-CoV) caused an endemic in Middle Eastern countries [2].
T20 1092-1159 Sentence denotes Fig. 1 Structure of respiratory syndrome causing human coronavirus.
T21 1160-1406 Sentence denotes Recently at the end of 2019, Wuhan an emerging business hub of China experienced an outbreak of a novel coronavirus that killed more than eighteen hundred and infected over seventy thousand individuals within the first fifty days of the epidemic.
T22 1407-1478 Sentence denotes This virus was reported to be a member of the β group of coronaviruses.
T23 1479-1591 Sentence denotes The novel virus was named as Wuhan coronavirus or 2019 novel coronavirus (2019-nCov) by the Chinese researchers.
T24 1592-1722 Sentence denotes The International Committee on Taxonomy of Viruses (ICTV) named the virus as SARS-CoV-2 and the disease as COVID-19 [3], [4], [5].
T25 1723-1992 Sentence denotes In the history, SRAS-CoV (2003) infected 8098 individuals with mortality rate of 9%, across 26 contries in the world, on the other hand, novel corona virus (2019) infected 120,000 induviduals with mortality rate of 2.9%, across 109 countries, till date of this writing.
T26 1993-2207 Sentence denotes It shows that the transmission rate of SARS-CoV-2 is higher than SRAS-CoV and the reason could be genetic recombination event at S protein in the RBD region of SARS-CoV-2 may have enhanced its transmission ability.
T27 2208-2290 Sentence denotes In this review article, we discuss the origination of human coronaviruses briefly.
T28 2291-2414 Sentence denotes We further discuss the associated infectiousness and biological features of SARS and MERS with a special focus on COVID-19.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 617-634 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320
T2 636-639 Phenotype denotes ALI http://www.orpha.net/ORDO/Orphanet_178320
T3 651-671 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T39 13-26 NCBITaxon:11118 denotes Coronaviruses
T40 41-54 NCBITaxon:11118 denotes Coronaviridae
T41 69-80 NCBITaxon:99883 denotes Nidovirales
T42 152-157 NCBITaxon:10239 denotes virus
T43 183-194 NCBITaxon:11118 denotes coronavirus
T44 196-209 NCBITaxon:11118 denotes Coronaviruses
T45 267-282 SO:0000984 denotes single-stranded
T46 292-299 GO:0005634 denotes nucleic
T47 378-391 NCBITaxon:11118 denotes coronaviruses
T48 448-459 NCBITaxon:11118 denotes coronavirus
T49 465-477 SP_10 denotes severe acute
T50 478-489 SP_10;UBERON:0001004 denotes respiratory
T51 490-510 SP_10 denotes syndrome coronavirus
T52 512-520 SP_10 denotes SARS-CoV
T53 555-566 SP_9 denotes Middle East
T54 567-578 SP_9;UBERON:0001004 denotes respiratory
T55 579-599 SP_9 denotes syndrome coronavirus
T56 601-609 SP_9 denotes MERS-CoV
T57 623-627 UBERON:0002048 denotes lung
T58 651-662 UBERON:0001004 denotes respiratory
T59 703-712 UBERON:0002048 denotes pulmonary
T60 751-758 NCBITaxon:10239 denotes viruses
T61 787-794 NCBITaxon:33208 denotes animals
T62 836-847 UBERON:0001004 denotes respiratory
T63 858-862 SP_10 denotes SARS
T64 883-891 SP_10 denotes SARS-CoV
T65 963-974 NCBITaxon:11118 denotes coronavirus
T66 985-996 SP_9 denotes Middle East
T67 997-1008 SP_9;UBERON:0001004 denotes respiratory
T68 1009-1029 SP_9 denotes syndrome coronavirus
T69 1031-1039 SP_9 denotes MERS-CoV
T70 1112-1123 UBERON:0001004 denotes respiratory
T71 1141-1146 SP_6;NCBITaxon:9606 denotes human
T72 1147-1158 NCBITaxon:11118 denotes coronavirus
T76 1264-1275 NCBITaxon:11118 denotes coronavirus
T77 1350-1361 NCBITaxon:1 denotes individuals
T78 1412-1417 NCBITaxon:10239 denotes virus
T79 1464-1477 NCBITaxon:11118 denotes coronaviruses
T80 1489-1494 NCBITaxon:10239 denotes virus
T81 1514-1525 NCBITaxon:11118 denotes coronavirus
T82 1540-1551 NCBITaxon:11118 denotes coronavirus
T83 1553-1562 SP_7 denotes 2019-nCov
T84 1635-1642 NCBITaxon:7742 denotes Viruses
T85 1660-1665 NCBITaxon:10239 denotes virus
T86 1669-1679 SP_7 denotes SARS-CoV-2
T87 1699-1707 SP_7 denotes COVID-19
T88 1769-1780 NCBITaxon:1 denotes individuals
T89 1866-1878 NCBITaxon:11118 denotes corona virus
T90 2032-2042 SP_7 denotes SARS-CoV-2
T91 2091-2098 SO:0000704 denotes genetic
T92 2122-2131 PG_1 denotes S protein
T93 2153-2163 SP_7 denotes SARS-CoV-2
T94 2262-2267 SP_6;NCBITaxon:9606 denotes human
T95 2268-2281 NCBITaxon:11118 denotes coronaviruses
T96 2367-2371 SP_10 denotes SARS
T97 2376-2380 SP_9 denotes MERS
T98 2405-2413 SP_7 denotes COVID-19
T13196 13-26 NCBITaxon:11118 denotes Coronaviruses
T44040 41-54 NCBITaxon:11118 denotes Coronaviridae
T11580 69-80 NCBITaxon:99883 denotes Nidovirales
T44661 152-157 NCBITaxon:10239 denotes virus
T51549 183-194 NCBITaxon:11118 denotes coronavirus
T84215 196-209 NCBITaxon:11118 denotes Coronaviruses
T57065 267-282 SO:0000984 denotes single-stranded
T83623 292-299 GO:0005634 denotes nucleic
T76404 378-391 NCBITaxon:11118 denotes coronaviruses
T51577 448-459 NCBITaxon:11118 denotes coronavirus
T40114 465-477 SP_10 denotes severe acute
T1406 478-489 SP_10;UBERON:0001004 denotes respiratory
T90717 490-510 SP_10 denotes syndrome coronavirus
T28748 512-520 SP_10 denotes SARS-CoV
T51265 555-566 SP_9 denotes Middle East
T29545 567-578 SP_9;UBERON:0001004 denotes respiratory
T67497 579-599 SP_9 denotes syndrome coronavirus
T66576 601-609 SP_9 denotes MERS-CoV
T40387 623-627 UBERON:0002048 denotes lung
T75651 651-662 UBERON:0001004 denotes respiratory
T92569 703-712 UBERON:0002048 denotes pulmonary
T42885 751-758 NCBITaxon:10239 denotes viruses
T48750 787-794 NCBITaxon:33208 denotes animals
T1255 836-847 UBERON:0001004 denotes respiratory
T27551 858-862 SP_10 denotes SARS
T47256 883-891 SP_10 denotes SARS-CoV
T63553 963-974 NCBITaxon:11118 denotes coronavirus
T88775 985-996 SP_9 denotes Middle East
T87019 997-1008 SP_9;UBERON:0001004 denotes respiratory
T42462 1009-1029 SP_9 denotes syndrome coronavirus
T93948 1031-1039 SP_9 denotes MERS-CoV
T76602 1112-1123 UBERON:0001004 denotes respiratory
T83009 1141-1146 SP_6;NCBITaxon:9606 denotes human
T66166 1147-1158 NCBITaxon:11118 denotes coronavirus
T72230 1264-1275 NCBITaxon:11118 denotes coronavirus
T15576 1350-1361 NCBITaxon:1 denotes individuals
T79306 1412-1417 NCBITaxon:10239 denotes virus
T2672 1464-1477 NCBITaxon:11118 denotes coronaviruses
T4600 1489-1494 NCBITaxon:10239 denotes virus
T98878 1514-1525 NCBITaxon:11118 denotes coronavirus
T50541 1540-1551 NCBITaxon:11118 denotes coronavirus
T35002 1553-1562 SP_7 denotes 2019-nCov
T21992 1635-1642 NCBITaxon:7742 denotes Viruses
T90895 1660-1665 NCBITaxon:10239 denotes virus
T27785 1669-1679 SP_7 denotes SARS-CoV-2
T94812 1699-1707 SP_7 denotes COVID-19
T1170 1769-1780 NCBITaxon:1 denotes individuals
T61751 1866-1878 NCBITaxon:11118 denotes corona virus
T16129 2032-2042 SP_7 denotes SARS-CoV-2
T23860 2091-2098 SO:0000704 denotes genetic
T82806 2122-2131 PG_1 denotes S protein
T29113 2153-2163 SP_7 denotes SARS-CoV-2
T67042 2262-2267 SP_6;NCBITaxon:9606 denotes human
T97990 2268-2281 NCBITaxon:11118 denotes coronaviruses
T69864 2367-2371 SP_10 denotes SARS
T89343 2376-2380 SP_9 denotes MERS
T54792 2405-2413 SP_7 denotes COVID-19

2_test

Id Subject Object Predicate Lexical cue
32257431-23835475-54950074 1088-1089 23835475 denotes 2
32257431-30531947-54950075 1709-1710 30531947 denotes 3