PMC:7113610 / 1300-3714
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
44 | 1141-1158 | Species | denotes | human coronavirus | Tax:694448 |
45 | 1099-1132 | Disease | denotes | Structure of respiratory syndrome | MESH:D012120 |
64 | 13-26 | Species | denotes | Coronaviruses | Tax:11118 |
65 | 41-54 | Species | denotes | Coronaviridae | Tax:11118 |
66 | 183-194 | Species | denotes | coronavirus | Tax:11118 |
67 | 196-209 | Species | denotes | Coronaviruses | Tax:11118 |
68 | 378-391 | Species | denotes | coronaviruses | Tax:11118 |
69 | 448-459 | Species | denotes | coronavirus | Tax:11118 |
70 | 465-510 | Species | denotes | severe acute respiratory syndrome coronavirus | Tax:694009 |
71 | 512-520 | Species | denotes | SARS-CoV | Tax:694009 |
72 | 523-527 | Species | denotes | H5N1 | Tax:102793 |
73 | 541-545 | Species | denotes | H1N1 | Tax:114727 |
74 | 555-610 | Species | denotes | Middle East respiratory syndrome coronavirus (MERS-CoV) | Tax:1335626 |
75 | 883-891 | Species | denotes | SARS-CoV | Tax:694009 |
76 | 963-974 | Species | denotes | coronavirus | Tax:11118 |
77 | 985-1040 | Species | denotes | Middle East respiratory syndrome coronavirus (MERS-CoV) | Tax:1335626 |
78 | 623-634 | Disease | denotes | lung injury | MESH:D055370 |
79 | 645-680 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
80 | 682-686 | Disease | denotes | ARDS | MESH:D012128 |
81 | 703-720 | Disease | denotes | pulmonary failure | MESH:D012131 |
99 | 1258-1275 | Species | denotes | novel coronavirus | Tax:2697049 |
100 | 1464-1477 | Species | denotes | coronaviruses | Tax:11118 |
101 | 1508-1525 | Species | denotes | Wuhan coronavirus | Tax:2697049 |
102 | 1529-1551 | Species | denotes | 2019 novel coronavirus | Tax:2697049 |
103 | 1553-1562 | Species | denotes | 2019-nCov | Tax:2697049 |
104 | 1669-1679 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
105 | 1744-1747 | Species | denotes | CoV | Tax:11118 |
106 | 2032-2042 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
107 | 2063-2066 | Species | denotes | CoV | Tax:11118 |
108 | 2153-2163 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
109 | 2262-2267 | Species | denotes | human | Tax:9606 |
110 | 2268-2281 | Species | denotes | coronaviruses | Tax:11118 |
111 | 1319-1327 | Disease | denotes | infected | MESH:D007239 |
112 | 1699-1707 | Disease | denotes | COVID-19 | MESH:C000657245 |
113 | 1755-1763 | Disease | denotes | infected | MESH:D007239 |
114 | 1866-1894 | Disease | denotes | corona virus (2019) infected | MESH:C000657245 |
115 | 2405-2413 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 283-286 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T2 | 623-627 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T3 | 1854-1858 | Body_part | denotes | hand | http://purl.org/sig/ont/fma/fma9712 |
T4 | 2124-2131 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 623-627 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T2 | 1854-1858 | Body_part | denotes | hand | http://purl.obolibrary.org/obo/UBERON_0002398 |
LitCovid_AGAC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
p68640s41 | 2173-2181 | PosReg | denotes | enhanced |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T21 | 465-498 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T22 | 512-520 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T23 | 512-516 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T24 | 528-545 | Disease | denotes | influenza A, H1N1 | http://purl.obolibrary.org/obo/MONDO_0005460 |
T25 | 528-537 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T26 | 617-634 | Disease | denotes | acute lung injury | http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796 |
T28 | 628-634 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
T29 | 636-639 | Disease | denotes | ALI | http://purl.obolibrary.org/obo/MONDO_0006502 |
T30 | 645-680 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T31 | 651-680 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T32 | 682-686 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
T33 | 823-856 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T34 | 858-862 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T35 | 883-891 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T36 | 883-887 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T37 | 1669-1677 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T38 | 1669-1673 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T39 | 1699-1707 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T40 | 2032-2040 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T41 | 2032-2036 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T42 | 2153-2161 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T43 | 2153-2157 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T44 | 2325-2339 | Disease | denotes | infectiousness | http://purl.obolibrary.org/obo/MONDO_0005550 |
T45 | 2367-2371 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T46 | 2405-2413 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11 | 152-157 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T12 | 181-182 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T13 | 265-266 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T14 | 290-291 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T15 | 538-539 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T16 | 623-627 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T17 | 623-627 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T18 | 751-758 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T19 | 787-794 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
T20 | 821-822 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T21 | 928-929 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T22 | 1141-1146 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T23 | 1256-1257 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T24 | 1412-1417 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T25 | 1437-1438 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T26 | 1489-1494 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T27 | 1635-1642 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Viruses |
T28 | 1660-1665 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T29 | 1709-1715 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 3], [4 |
T30 | 1873-1878 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T31 | 2262-2267 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T32 | 2386-2387 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T33 | 2396-2401 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focus |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T7 | 106-111 | Chemical | denotes | crown | http://purl.obolibrary.org/obo/CHEBI_37409 |
T8 | 403-408 | Chemical | denotes | alpha | http://purl.obolibrary.org/obo/CHEBI_30216 |
T9 | 414-418 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
T10 | 424-429 | Chemical | denotes | gamma | http://purl.obolibrary.org/obo/CHEBI_30212 |
T11 | 1455-1460 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
T12 | 1866-1872 | Chemical | denotes | corona | http://purl.obolibrary.org/obo/CHEBI_37409 |
T13 | 2124-2131 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12 | 0-12 | Sentence | denotes | Introduction |
T13 | 13-87 | Sentence | denotes | Coronaviruses belong to the Coronaviridae family in the Nidovirales order. |
T14 | 88-195 | Sentence | denotes | Corona represents crown-like spikes on the outer surface of the virus; thus, it was named as a coronavirus. |
T15 | 196-360 | Sentence | denotes | Coronaviruses are minute in size (65–125 nm in diameter) and contain a single-stranded RNA as a nucleic material, size ranging from 26 to 32kbs in length (Fig. 1 ). |
T16 | 361-460 | Sentence | denotes | The subgroups of coronaviruses family are alpha (α), beta (β), gamma (γ) and delta (δ) coronavirus. |
T17 | 461-744 | Sentence | denotes | The severe acute respiratory syndrome coronavirus (SARS-CoV), H5N1 influenza A, H1N1 2009 and Middle East respiratory syndrome coronavirus (MERS-CoV) cause acute lung injury (ALI) and acute respiratory distress syndrome (ARDS) which leads to pulmonary failure and result in fatality. |
T18 | 745-922 | Sentence | denotes | These viruses were thought to infect only animals until the world witnessed a severe acute respiratory syndrome (SARS) outbreak caused by SARS-CoV, 2002 in Guangdong, China [1]. |
T19 | 923-1091 | Sentence | denotes | Only a decade later, another pathogenic coronavirus, known as Middle East respiratory syndrome coronavirus (MERS-CoV) caused an endemic in Middle Eastern countries [2]. |
T20 | 1092-1159 | Sentence | denotes | Fig. 1 Structure of respiratory syndrome causing human coronavirus. |
T21 | 1160-1406 | Sentence | denotes | Recently at the end of 2019, Wuhan an emerging business hub of China experienced an outbreak of a novel coronavirus that killed more than eighteen hundred and infected over seventy thousand individuals within the first fifty days of the epidemic. |
T22 | 1407-1478 | Sentence | denotes | This virus was reported to be a member of the β group of coronaviruses. |
T23 | 1479-1591 | Sentence | denotes | The novel virus was named as Wuhan coronavirus or 2019 novel coronavirus (2019-nCov) by the Chinese researchers. |
T24 | 1592-1722 | Sentence | denotes | The International Committee on Taxonomy of Viruses (ICTV) named the virus as SARS-CoV-2 and the disease as COVID-19 [3], [4], [5]. |
T25 | 1723-1992 | Sentence | denotes | In the history, SRAS-CoV (2003) infected 8098 individuals with mortality rate of 9%, across 26 contries in the world, on the other hand, novel corona virus (2019) infected 120,000 induviduals with mortality rate of 2.9%, across 109 countries, till date of this writing. |
T26 | 1993-2207 | Sentence | denotes | It shows that the transmission rate of SARS-CoV-2 is higher than SRAS-CoV and the reason could be genetic recombination event at S protein in the RBD region of SARS-CoV-2 may have enhanced its transmission ability. |
T27 | 2208-2290 | Sentence | denotes | In this review article, we discuss the origination of human coronaviruses briefly. |
T28 | 2291-2414 | Sentence | denotes | We further discuss the associated infectiousness and biological features of SARS and MERS with a special focus on COVID-19. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 617-634 | Phenotype | denotes | acute lung injury | http://www.orpha.net/ORDO/Orphanet_178320 |
T2 | 636-639 | Phenotype | denotes | ALI | http://www.orpha.net/ORDO/Orphanet_178320 |
T3 | 651-671 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T39 | 13-26 | NCBITaxon:11118 | denotes | Coronaviruses |
T40 | 41-54 | NCBITaxon:11118 | denotes | Coronaviridae |
T41 | 69-80 | NCBITaxon:99883 | denotes | Nidovirales |
T42 | 152-157 | NCBITaxon:10239 | denotes | virus |
T43 | 183-194 | NCBITaxon:11118 | denotes | coronavirus |
T44 | 196-209 | NCBITaxon:11118 | denotes | Coronaviruses |
T45 | 267-282 | SO:0000984 | denotes | single-stranded |
T46 | 292-299 | GO:0005634 | denotes | nucleic |
T47 | 378-391 | NCBITaxon:11118 | denotes | coronaviruses |
T48 | 448-459 | NCBITaxon:11118 | denotes | coronavirus |
T49 | 465-477 | SP_10 | denotes | severe acute |
T50 | 478-489 | SP_10;UBERON:0001004 | denotes | respiratory |
T51 | 490-510 | SP_10 | denotes | syndrome coronavirus |
T52 | 512-520 | SP_10 | denotes | SARS-CoV |
T53 | 555-566 | SP_9 | denotes | Middle East |
T54 | 567-578 | SP_9;UBERON:0001004 | denotes | respiratory |
T55 | 579-599 | SP_9 | denotes | syndrome coronavirus |
T56 | 601-609 | SP_9 | denotes | MERS-CoV |
T57 | 623-627 | UBERON:0002048 | denotes | lung |
T58 | 651-662 | UBERON:0001004 | denotes | respiratory |
T59 | 703-712 | UBERON:0002048 | denotes | pulmonary |
T60 | 751-758 | NCBITaxon:10239 | denotes | viruses |
T61 | 787-794 | NCBITaxon:33208 | denotes | animals |
T62 | 836-847 | UBERON:0001004 | denotes | respiratory |
T63 | 858-862 | SP_10 | denotes | SARS |
T64 | 883-891 | SP_10 | denotes | SARS-CoV |
T65 | 963-974 | NCBITaxon:11118 | denotes | coronavirus |
T66 | 985-996 | SP_9 | denotes | Middle East |
T67 | 997-1008 | SP_9;UBERON:0001004 | denotes | respiratory |
T68 | 1009-1029 | SP_9 | denotes | syndrome coronavirus |
T69 | 1031-1039 | SP_9 | denotes | MERS-CoV |
T70 | 1112-1123 | UBERON:0001004 | denotes | respiratory |
T71 | 1141-1146 | SP_6;NCBITaxon:9606 | denotes | human |
T72 | 1147-1158 | NCBITaxon:11118 | denotes | coronavirus |
T76 | 1264-1275 | NCBITaxon:11118 | denotes | coronavirus |
T77 | 1350-1361 | NCBITaxon:1 | denotes | individuals |
T78 | 1412-1417 | NCBITaxon:10239 | denotes | virus |
T79 | 1464-1477 | NCBITaxon:11118 | denotes | coronaviruses |
T80 | 1489-1494 | NCBITaxon:10239 | denotes | virus |
T81 | 1514-1525 | NCBITaxon:11118 | denotes | coronavirus |
T82 | 1540-1551 | NCBITaxon:11118 | denotes | coronavirus |
T83 | 1553-1562 | SP_7 | denotes | 2019-nCov |
T84 | 1635-1642 | NCBITaxon:7742 | denotes | Viruses |
T85 | 1660-1665 | NCBITaxon:10239 | denotes | virus |
T86 | 1669-1679 | SP_7 | denotes | SARS-CoV-2 |
T87 | 1699-1707 | SP_7 | denotes | COVID-19 |
T88 | 1769-1780 | NCBITaxon:1 | denotes | individuals |
T89 | 1866-1878 | NCBITaxon:11118 | denotes | corona virus |
T90 | 2032-2042 | SP_7 | denotes | SARS-CoV-2 |
T91 | 2091-2098 | SO:0000704 | denotes | genetic |
T92 | 2122-2131 | PG_1 | denotes | S protein |
T93 | 2153-2163 | SP_7 | denotes | SARS-CoV-2 |
T94 | 2262-2267 | SP_6;NCBITaxon:9606 | denotes | human |
T95 | 2268-2281 | NCBITaxon:11118 | denotes | coronaviruses |
T96 | 2367-2371 | SP_10 | denotes | SARS |
T97 | 2376-2380 | SP_9 | denotes | MERS |
T98 | 2405-2413 | SP_7 | denotes | COVID-19 |
T13196 | 13-26 | NCBITaxon:11118 | denotes | Coronaviruses |
T44040 | 41-54 | NCBITaxon:11118 | denotes | Coronaviridae |
T11580 | 69-80 | NCBITaxon:99883 | denotes | Nidovirales |
T44661 | 152-157 | NCBITaxon:10239 | denotes | virus |
T51549 | 183-194 | NCBITaxon:11118 | denotes | coronavirus |
T84215 | 196-209 | NCBITaxon:11118 | denotes | Coronaviruses |
T57065 | 267-282 | SO:0000984 | denotes | single-stranded |
T83623 | 292-299 | GO:0005634 | denotes | nucleic |
T76404 | 378-391 | NCBITaxon:11118 | denotes | coronaviruses |
T51577 | 448-459 | NCBITaxon:11118 | denotes | coronavirus |
T40114 | 465-477 | SP_10 | denotes | severe acute |
T1406 | 478-489 | SP_10;UBERON:0001004 | denotes | respiratory |
T90717 | 490-510 | SP_10 | denotes | syndrome coronavirus |
T28748 | 512-520 | SP_10 | denotes | SARS-CoV |
T51265 | 555-566 | SP_9 | denotes | Middle East |
T29545 | 567-578 | SP_9;UBERON:0001004 | denotes | respiratory |
T67497 | 579-599 | SP_9 | denotes | syndrome coronavirus |
T66576 | 601-609 | SP_9 | denotes | MERS-CoV |
T40387 | 623-627 | UBERON:0002048 | denotes | lung |
T75651 | 651-662 | UBERON:0001004 | denotes | respiratory |
T92569 | 703-712 | UBERON:0002048 | denotes | pulmonary |
T42885 | 751-758 | NCBITaxon:10239 | denotes | viruses |
T48750 | 787-794 | NCBITaxon:33208 | denotes | animals |
T1255 | 836-847 | UBERON:0001004 | denotes | respiratory |
T27551 | 858-862 | SP_10 | denotes | SARS |
T47256 | 883-891 | SP_10 | denotes | SARS-CoV |
T63553 | 963-974 | NCBITaxon:11118 | denotes | coronavirus |
T88775 | 985-996 | SP_9 | denotes | Middle East |
T87019 | 997-1008 | SP_9;UBERON:0001004 | denotes | respiratory |
T42462 | 1009-1029 | SP_9 | denotes | syndrome coronavirus |
T93948 | 1031-1039 | SP_9 | denotes | MERS-CoV |
T76602 | 1112-1123 | UBERON:0001004 | denotes | respiratory |
T83009 | 1141-1146 | SP_6;NCBITaxon:9606 | denotes | human |
T66166 | 1147-1158 | NCBITaxon:11118 | denotes | coronavirus |
T72230 | 1264-1275 | NCBITaxon:11118 | denotes | coronavirus |
T15576 | 1350-1361 | NCBITaxon:1 | denotes | individuals |
T79306 | 1412-1417 | NCBITaxon:10239 | denotes | virus |
T2672 | 1464-1477 | NCBITaxon:11118 | denotes | coronaviruses |
T4600 | 1489-1494 | NCBITaxon:10239 | denotes | virus |
T98878 | 1514-1525 | NCBITaxon:11118 | denotes | coronavirus |
T50541 | 1540-1551 | NCBITaxon:11118 | denotes | coronavirus |
T35002 | 1553-1562 | SP_7 | denotes | 2019-nCov |
T21992 | 1635-1642 | NCBITaxon:7742 | denotes | Viruses |
T90895 | 1660-1665 | NCBITaxon:10239 | denotes | virus |
T27785 | 1669-1679 | SP_7 | denotes | SARS-CoV-2 |
T94812 | 1699-1707 | SP_7 | denotes | COVID-19 |
T1170 | 1769-1780 | NCBITaxon:1 | denotes | individuals |
T61751 | 1866-1878 | NCBITaxon:11118 | denotes | corona virus |
T16129 | 2032-2042 | SP_7 | denotes | SARS-CoV-2 |
T23860 | 2091-2098 | SO:0000704 | denotes | genetic |
T82806 | 2122-2131 | PG_1 | denotes | S protein |
T29113 | 2153-2163 | SP_7 | denotes | SARS-CoV-2 |
T67042 | 2262-2267 | SP_6;NCBITaxon:9606 | denotes | human |
T97990 | 2268-2281 | NCBITaxon:11118 | denotes | coronaviruses |
T69864 | 2367-2371 | SP_10 | denotes | SARS |
T89343 | 2376-2380 | SP_9 | denotes | MERS |
T54792 | 2405-2413 | SP_7 | denotes | COVID-19 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32257431-23835475-54950074 | 1088-1089 | 23835475 | denotes | 2 |
32257431-30531947-54950075 | 1709-1710 | 30531947 | denotes | 3 |