PMC:7111504 / 6608-7258 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"115","span":{"begin":207,"end":216},"obj":"Species"},{"id":"116","span":{"begin":542,"end":550},"obj":"Species"},{"id":"117","span":{"begin":637,"end":649},"obj":"Species"}],"attributes":[{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"Tax:2697049"},{"id":"A116","pred":"tao:has_database_id","subj":"116","obj":"Tax:694009"},{"id":"A117","pred":"tao:has_database_id","subj":"117","obj":"Tax:9606"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The peptides having an exact sequence alignment with epitopes in IEDB had normalized alignment scores ranging from 4 to 6. Taking the normalized alignment score of exact matches as a reference, we extracted 2019-nCoV peptides having score greater or equal to 4. As illustrated in Figure 1A, we observed 45 and 11 peptides having normalized alignment score ≥ 4 and ≥ 5 respectively ( Figure 1A inset). The target peptides were originated from 10 different sources ( Figure 1B) where a total 36 peptides were derived from strains associated to SARS CoV. Of interest, we also observed 7 hits having high sequence similarity to targets from Homo sapiens."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T81","span":{"begin":53,"end":61},"obj":"BV_9"},{"id":"T82","span":{"begin":207,"end":216},"obj":"SP_7"},{"id":"T83","span":{"begin":542,"end":550},"obj":"SP_10"},{"id":"T84","span":{"begin":637,"end":649},"obj":"SP_6;NCBITaxon:9606"},{"id":"T26522","span":{"begin":53,"end":61},"obj":"BV_9"},{"id":"T51283","span":{"begin":207,"end":216},"obj":"SP_7"},{"id":"T83402","span":{"begin":542,"end":550},"obj":"SP_10"},{"id":"T38460","span":{"begin":637,"end":649},"obj":"SP_6;NCBITaxon:9606"}],"text":"The peptides having an exact sequence alignment with epitopes in IEDB had normalized alignment scores ranging from 4 to 6. Taking the normalized alignment score of exact matches as a reference, we extracted 2019-nCoV peptides having score greater or equal to 4. As illustrated in Figure 1A, we observed 45 and 11 peptides having normalized alignment score ≥ 4 and ≥ 5 respectively ( Figure 1A inset). The target peptides were originated from 10 different sources ( Figure 1B) where a total 36 peptides were derived from strains associated to SARS CoV. Of interest, we also observed 7 hits having high sequence similarity to targets from Homo sapiens."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T13","span":{"begin":542,"end":546},"obj":"Disease"}],"attributes":[{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"The peptides having an exact sequence alignment with epitopes in IEDB had normalized alignment scores ranging from 4 to 6. Taking the normalized alignment score of exact matches as a reference, we extracted 2019-nCoV peptides having score greater or equal to 4. As illustrated in Figure 1A, we observed 45 and 11 peptides having normalized alignment score ≥ 4 and ≥ 5 respectively ( Figure 1A inset). The target peptides were originated from 10 different sources ( Figure 1B) where a total 36 peptides were derived from strains associated to SARS CoV. Of interest, we also observed 7 hits having high sequence similarity to targets from Homo sapiens."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T96","span":{"begin":4,"end":12},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T97","span":{"begin":181,"end":182},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T98","span":{"begin":217,"end":225},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T99","span":{"begin":303,"end":305},"obj":"http://purl.obolibrary.org/obo/CLO_0053799"},{"id":"T100","span":{"begin":310,"end":312},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T101","span":{"begin":313,"end":321},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T102","span":{"begin":412,"end":420},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T103","span":{"begin":482,"end":483},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T104","span":{"begin":490,"end":492},"obj":"http://purl.obolibrary.org/obo/CLO_0001313"},{"id":"T105","span":{"begin":493,"end":501},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T106","span":{"begin":637,"end":649},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"text":"The peptides having an exact sequence alignment with epitopes in IEDB had normalized alignment scores ranging from 4 to 6. Taking the normalized alignment score of exact matches as a reference, we extracted 2019-nCoV peptides having score greater or equal to 4. As illustrated in Figure 1A, we observed 45 and 11 peptides having normalized alignment score ≥ 4 and ≥ 5 respectively ( Figure 1A inset). The target peptides were originated from 10 different sources ( Figure 1B) where a total 36 peptides were derived from strains associated to SARS CoV. Of interest, we also observed 7 hits having high sequence similarity to targets from Homo sapiens."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T54","span":{"begin":4,"end":12},"obj":"Chemical"},{"id":"T55","span":{"begin":217,"end":225},"obj":"Chemical"},{"id":"T56","span":{"begin":313,"end":321},"obj":"Chemical"},{"id":"T57","span":{"begin":412,"end":420},"obj":"Chemical"},{"id":"T58","span":{"begin":493,"end":501},"obj":"Chemical"}],"attributes":[{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A56","pred":"chebi_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"The peptides having an exact sequence alignment with epitopes in IEDB had normalized alignment scores ranging from 4 to 6. Taking the normalized alignment score of exact matches as a reference, we extracted 2019-nCoV peptides having score greater or equal to 4. As illustrated in Figure 1A, we observed 45 and 11 peptides having normalized alignment score ≥ 4 and ≥ 5 respectively ( Figure 1A inset). The target peptides were originated from 10 different sources ( Figure 1B) where a total 36 peptides were derived from strains associated to SARS CoV. Of interest, we also observed 7 hits having high sequence similarity to targets from Homo sapiens."}

{"project":"LitCovid-sentences","denotations":[{"id":"T74","span":{"begin":0,"end":122},"obj":"Sentence"},{"id":"T75","span":{"begin":123,"end":261},"obj":"Sentence"},{"id":"T76","span":{"begin":262,"end":400},"obj":"Sentence"},{"id":"T77","span":{"begin":401,"end":551},"obj":"Sentence"},{"id":"T78","span":{"begin":552,"end":650},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The peptides having an exact sequence alignment with epitopes in IEDB had normalized alignment scores ranging from 4 to 6. Taking the normalized alignment score of exact matches as a reference, we extracted 2019-nCoV peptides having score greater or equal to 4. As illustrated in Figure 1A, we observed 45 and 11 peptides having normalized alignment score ≥ 4 and ≥ 5 respectively ( Figure 1A inset). The target peptides were originated from 10 different sources ( Figure 1B) where a total 36 peptides were derived from strains associated to SARS CoV. Of interest, we also observed 7 hits having high sequence similarity to targets from Homo sapiens."}