PMC:7111504 / 3563-4175 JSONTXT

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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"64","span":{"begin":510,"end":515},"obj":"Gene"},{"id":"65","span":{"begin":577,"end":580},"obj":"Gene"},{"id":"66","span":{"begin":586,"end":589},"obj":"Gene"},{"id":"67","span":{"begin":101,"end":106},"obj":"Species"},{"id":"68","span":{"begin":180,"end":189},"obj":"Species"},{"id":"69","span":{"begin":375,"end":383},"obj":"Species"}],"attributes":[{"id":"A64","pred":"tao:has_database_id","subj":"64","obj":"Gene:3105"},{"id":"A65","pred":"tao:has_database_id","subj":"65","obj":"Gene:925"},{"id":"A66","pred":"tao:has_database_id","subj":"66","obj":"Gene:920"},{"id":"A67","pred":"tao:has_database_id","subj":"67","obj":"Tax:9606"},{"id":"A68","pred":"tao:has_database_id","subj":"68","obj":"Tax:2697049"},{"id":"A69","pred":"tao:has_database_id","subj":"69","obj":"Tax:694009"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    LitCovid-PMC-OGER-BB

    {"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T52","span":{"begin":78,"end":84},"obj":"CL:0000084;BV_23"},{"id":"T53","span":{"begin":85,"end":91},"obj":"BV_23"},{"id":"T54","span":{"begin":101,"end":106},"obj":"SP_6;NCBITaxon:9606"},{"id":"T55","span":{"begin":119,"end":127},"obj":"NCBITaxon:1"},{"id":"T56","span":{"begin":180,"end":189},"obj":"SP_7"},{"id":"T57","span":{"begin":190,"end":209},"obj":"SO:0000236"},{"id":"T58","span":{"begin":211,"end":215},"obj":"SO:0000236"},{"id":"T59","span":{"begin":375,"end":383},"obj":"SP_10"},{"id":"T60","span":{"begin":463,"end":470},"obj":"SO:0001023"},{"id":"T61","span":{"begin":510,"end":515},"obj":"PR:000002009"},{"id":"T62","span":{"begin":586,"end":589},"obj":"PR:000001004"},{"id":"T63","span":{"begin":591,"end":598},"obj":"CL:0000084"},{"id":"T61606","span":{"begin":78,"end":84},"obj":"CL:0000084;BV_23"},{"id":"T92404","span":{"begin":85,"end":91},"obj":"BV_23"},{"id":"T59646","span":{"begin":101,"end":106},"obj":"SP_6;NCBITaxon:9606"},{"id":"T46254","span":{"begin":119,"end":127},"obj":"NCBITaxon:1"},{"id":"T44920","span":{"begin":180,"end":189},"obj":"SP_7"},{"id":"T21846","span":{"begin":190,"end":209},"obj":"SO:0000236"},{"id":"T65235","span":{"begin":211,"end":215},"obj":"SO:0000236"},{"id":"T32217","span":{"begin":375,"end":383},"obj":"SP_10"},{"id":"T71600","span":{"begin":463,"end":470},"obj":"SO:0001023"},{"id":"T25480","span":{"begin":510,"end":515},"obj":"PR:000002009"},{"id":"T8945","span":{"begin":586,"end":589},"obj":"PR:000001004"},{"id":"T43204","span":{"begin":591,"end":598},"obj":"CL:0000084"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T6","span":{"begin":80,"end":84},"obj":"Body_part"},{"id":"T7","span":{"begin":459,"end":462},"obj":"Body_part"},{"id":"T8","span":{"begin":510,"end":513},"obj":"Body_part"},{"id":"T9","span":{"begin":593,"end":598},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T7","span":{"begin":375,"end":383},"obj":"Disease"}],"attributes":[{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T50","span":{"begin":17,"end":25},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T51","span":{"begin":78,"end":84},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T52","span":{"begin":101,"end":109},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T53","span":{"begin":119,"end":127},"obj":"http://purl.obolibrary.org/obo/OBI_0100026"},{"id":"T54","span":{"begin":119,"end":127},"obj":"http://purl.obolibrary.org/obo/UBERON_0000468"},{"id":"T55","span":{"begin":147,"end":148},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T56","span":{"begin":237,"end":245},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T57","span":{"begin":317,"end":325},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T58","span":{"begin":418,"end":426},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T59","span":{"begin":514,"end":515},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T60","span":{"begin":577,"end":580},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T61","span":{"begin":586,"end":589},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T62","span":{"begin":591,"end":598},"obj":"http://purl.obolibrary.org/obo/CL_0000084"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T18","span":{"begin":17,"end":25},"obj":"Chemical"},{"id":"T19","span":{"begin":237,"end":245},"obj":"Chemical"},{"id":"T20","span":{"begin":317,"end":325},"obj":"Chemical"},{"id":"T21","span":{"begin":418,"end":426},"obj":"Chemical"},{"id":"T22","span":{"begin":551,"end":553},"obj":"Chemical"}],"attributes":[{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A21","pred":"chebi_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T28","span":{"begin":0,"end":128},"obj":"Sentence"},{"id":"T29","span":{"begin":129,"end":274},"obj":"Sentence"},{"id":"T30","span":{"begin":275,"end":411},"obj":"Sentence"},{"id":"T31","span":{"begin":412,"end":612},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    MyTest

    {"project":"MyTest","denotations":[{"id":"32269766-30357391-30420970","span":{"begin":36,"end":37},"obj":"30357391"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}

    2_test

    {"project":"2_test","denotations":[{"id":"32269766-30357391-30420970","span":{"begin":36,"end":37},"obj":"30357391"}],"text":"We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism. We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches. Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4). These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively."}