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PMC:7111504 / 3563-4175 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
64 510-515 Gene denotes HLA-A Gene:3105
65 577-580 Gene denotes CD8 Gene:925
66 586-589 Gene denotes CD4 Gene:920
67 101-106 Species denotes human Tax:9606
68 180-189 Species denotes 2019-nCoV Tax:2697049
69 375-383 Species denotes SARS-CoV Tax:694009

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T52 78-84 CL:0000084;BV_23 denotes T cell
T53 85-91 BV_23 denotes assays
T54 101-106 SP_6;NCBITaxon:9606 denotes human
T55 119-127 NCBITaxon:1 denotes organism
T56 180-189 SP_7 denotes 2019-nCoV
T57 190-209 SO:0000236 denotes open reading frames
T58 211-215 SO:0000236 denotes ORFs
T59 375-383 SP_10 denotes SARS-CoV
T60 463-470 SO:0001023 denotes alleles
T61 510-515 PR:000002009 denotes HLA-A
T62 586-589 PR:000001004 denotes CD4
T63 591-598 CL:0000084 denotes T cells
T61606 78-84 CL:0000084;BV_23 denotes T cell
T92404 85-91 BV_23 denotes assays
T59646 101-106 SP_6;NCBITaxon:9606 denotes human
T46254 119-127 NCBITaxon:1 denotes organism
T44920 180-189 SP_7 denotes 2019-nCoV
T21846 190-209 SO:0000236 denotes open reading frames
T65235 211-215 SO:0000236 denotes ORFs
T32217 375-383 SP_10 denotes SARS-CoV
T71600 463-470 SO:0001023 denotes alleles
T25480 510-515 PR:000002009 denotes HLA-A
T8945 586-589 PR:000001004 denotes CD4
T43204 591-598 CL:0000084 denotes T cells

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 80-84 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T7 459-462 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T8 510-513 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T9 593-598 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 375-383 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T50 17-25 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T51 78-84 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T52 101-109 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human as
T53 119-127 http://purl.obolibrary.org/obo/OBI_0100026 denotes organism
T54 119-127 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organism
T55 147-148 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 237-245 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T57 317-325 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T58 418-426 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T59 514-515 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T60 577-580 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T61 586-589 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T62 591-598 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T18 17-25 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T19 237-245 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T20 317-325 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T21 418-426 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T22 551-553 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T28 0-128 Sentence denotes We collected all peptides in IEDB ( 3, as of 13-02-2020) reported positive in T cell assays and have human as the host organism.
T29 129-274 Sentence denotes We then conducted a local sequence alignment of 10 2019-nCoV open reading frames (ORFs) against 35,225 IEDB peptides, and found 28 exact matches.
T30 275-411 Sentence denotes Surprisingly, all identical hits (against peptides having sequence length greater than 3) were from SARS-CoV ( Table 1, Data Table 1 4).
T31 412-612 Sentence denotes These peptides have been shown to bind various HLA alleles, although with higher tendency towards HLA-A:02:01, from both class I and class II, and can be target for CD8+ and CD4+ T cells respectively.

MyTest

Id Subject Object Predicate Lexical cue
32269766-30357391-30420970 36-37 30357391 denotes 3

2_test

Id Subject Object Predicate Lexical cue
32269766-30357391-30420970 36-37 30357391 denotes 3