PMC:7111504 / 21996-22753
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7111504","sourcedb":"PMC","sourceid":"7111504","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7111504","text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)","divisions":[{"label":"label","span":{"begin":53,"end":54}},{"label":"p","span":{"begin":55,"end":213}},{"label":"label","span":{"begin":214,"end":215}},{"label":"p","span":{"begin":216,"end":382}},{"label":"label","span":{"begin":383,"end":384}},{"label":"p","span":{"begin":385,"end":571}},{"label":"label","span":{"begin":572,"end":573}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"328","span":{"begin":62,"end":66},"obj":"Species"},{"id":"329","span":{"begin":112,"end":120},"obj":"Species"},{"id":"330","span":{"begin":145,"end":149},"obj":"Species"},{"id":"331","span":{"begin":195,"end":203},"obj":"Species"},{"id":"333","span":{"begin":223,"end":227},"obj":"Species"},{"id":"338","span":{"begin":416,"end":420},"obj":"Species"},{"id":"339","span":{"begin":518,"end":522},"obj":"Species"},{"id":"340","span":{"begin":449,"end":458},"obj":"Chemical"},{"id":"341","span":{"begin":551,"end":560},"obj":"Chemical"},{"id":"346","span":{"begin":605,"end":609},"obj":"Species"},{"id":"347","span":{"begin":706,"end":710},"obj":"Species"},{"id":"348","span":{"begin":638,"end":647},"obj":"Chemical"},{"id":"349","span":{"begin":739,"end":748},"obj":"Chemical"}],"attributes":[{"id":"A328","pred":"tao:has_database_id","subj":"328","obj":"Tax:2697049"},{"id":"A329","pred":"tao:has_database_id","subj":"329","obj":"Tax:694009"},{"id":"A330","pred":"tao:has_database_id","subj":"330","obj":"Tax:2697049"},{"id":"A331","pred":"tao:has_database_id","subj":"331","obj":"Tax:694009"},{"id":"A333","pred":"tao:has_database_id","subj":"333","obj":"Tax:2697049"},{"id":"A338","pred":"tao:has_database_id","subj":"338","obj":"Tax:2697049"},{"id":"A339","pred":"tao:has_database_id","subj":"339","obj":"Tax:2697049"},{"id":"A346","pred":"tao:has_database_id","subj":"346","obj":"Tax:2697049"},{"id":"A347","pred":"tao:has_database_id","subj":"347","obj":"Tax:2697049"},{"subj":"328","pred":"source","obj":"LitCovid-PubTator"},{"subj":"329","pred":"source","obj":"LitCovid-PubTator"},{"subj":"330","pred":"source","obj":"LitCovid-PubTator"},{"subj":"331","pred":"source","obj":"LitCovid-PubTator"},{"subj":"333","pred":"source","obj":"LitCovid-PubTator"},{"subj":"338","pred":"source","obj":"LitCovid-PubTator"},{"subj":"339","pred":"source","obj":"LitCovid-PubTator"},{"subj":"340","pred":"source","obj":"LitCovid-PubTator"},{"subj":"341","pred":"source","obj":"LitCovid-PubTator"},{"subj":"346","pred":"source","obj":"LitCovid-PubTator"},{"subj":"347","pred":"source","obj":"LitCovid-PubTator"},{"subj":"348","pred":"source","obj":"LitCovid-PubTator"},{"subj":"349","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T225","span":{"begin":100,"end":111},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T226","span":{"begin":112,"end":120},"obj":"SP_10"},{"id":"T227","span":{"begin":183,"end":194},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T228","span":{"begin":195,"end":203},"obj":"SP_10"},{"id":"T229","span":{"begin":272,"end":283},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T230","span":{"begin":356,"end":367},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T231","span":{"begin":425,"end":436},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T232","span":{"begin":527,"end":538},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T233","span":{"begin":614,"end":625},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T234","span":{"begin":715,"end":726},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T87728","span":{"begin":100,"end":111},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T92255","span":{"begin":112,"end":120},"obj":"SP_10"},{"id":"T69618","span":{"begin":183,"end":194},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T13352","span":{"begin":195,"end":203},"obj":"SP_10"},{"id":"T64310","span":{"begin":272,"end":283},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T56881","span":{"begin":356,"end":367},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T70997","span":{"begin":425,"end":436},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T65589","span":{"begin":527,"end":538},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T52528","span":{"begin":614,"end":625},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T46179","span":{"begin":715,"end":726},"obj":"CHEBI:60816;CHEBI:60816"}],"attributes":[{"subj":"T225","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T226","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T227","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T228","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T229","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T230","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T231","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T232","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T233","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T234","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T87728","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T92255","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T69618","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T13352","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T64310","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T56881","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T70997","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T65589","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T52528","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T46179","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T25","span":{"begin":112,"end":116},"obj":"Disease"},{"id":"T26","span":{"begin":195,"end":199},"obj":"Disease"}],"attributes":[{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T265","span":{"begin":67,"end":75},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T266","span":{"begin":150,"end":158},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T267","span":{"begin":204,"end":212},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T268","span":{"begin":228,"end":236},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T269","span":{"begin":312,"end":320},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T270","span":{"begin":373,"end":381},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T271","span":{"begin":437,"end":445},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T272","span":{"begin":539,"end":547},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T273","span":{"begin":626,"end":634},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T274","span":{"begin":727,"end":735},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"attributes":[{"subj":"T265","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T266","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T267","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T268","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T269","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T270","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T271","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T272","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T273","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T274","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T150","span":{"begin":67,"end":75},"obj":"Chemical"},{"id":"T151","span":{"begin":150,"end":158},"obj":"Chemical"},{"id":"T152","span":{"begin":204,"end":212},"obj":"Chemical"},{"id":"T153","span":{"begin":228,"end":236},"obj":"Chemical"},{"id":"T154","span":{"begin":312,"end":320},"obj":"Chemical"},{"id":"T155","span":{"begin":373,"end":381},"obj":"Chemical"},{"id":"T156","span":{"begin":437,"end":445},"obj":"Chemical"},{"id":"T157","span":{"begin":539,"end":547},"obj":"Chemical"},{"id":"T158","span":{"begin":626,"end":634},"obj":"Chemical"},{"id":"T159","span":{"begin":727,"end":735},"obj":"Chemical"}],"attributes":[{"id":"A150","pred":"chebi_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A151","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A152","pred":"chebi_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A154","pred":"chebi_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A155","pred":"chebi_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A156","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A157","pred":"chebi_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A158","pred":"chebi_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A159","pred":"chebi_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"subj":"T150","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T151","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T152","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T153","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T154","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T155","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T156","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T157","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T158","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T159","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T236","span":{"begin":0,"end":213},"obj":"Sentence"},{"id":"T237","span":{"begin":214,"end":382},"obj":"Sentence"},{"id":"T238","span":{"begin":383,"end":571},"obj":"Sentence"},{"id":"T239","span":{"begin":572,"end":757},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T236","pred":"source","obj":"LitCovid-sentences"},{"subj":"T237","pred":"source","obj":"LitCovid-sentences"},{"subj":"T238","pred":"source","obj":"LitCovid-sentences"},{"subj":"T239","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#ecb393","default":true},{"id":"LitCovid-PMC-OGER-BB","color":"#9993ec"},{"id":"LitCovid-PD-MONDO","color":"#a6ec93"},{"id":"LitCovid-PD-CLO","color":"#ec93c0"},{"id":"LitCovid-PD-CHEBI","color":"#93daec"},{"id":"LitCovid-sentences","color":"#ece393"}]}]}}