PMC:7111504 / 21996-22753 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"328","span":{"begin":62,"end":66},"obj":"Species"},{"id":"329","span":{"begin":112,"end":120},"obj":"Species"},{"id":"330","span":{"begin":145,"end":149},"obj":"Species"},{"id":"331","span":{"begin":195,"end":203},"obj":"Species"},{"id":"333","span":{"begin":223,"end":227},"obj":"Species"},{"id":"338","span":{"begin":416,"end":420},"obj":"Species"},{"id":"339","span":{"begin":518,"end":522},"obj":"Species"},{"id":"340","span":{"begin":449,"end":458},"obj":"Chemical"},{"id":"341","span":{"begin":551,"end":560},"obj":"Chemical"},{"id":"346","span":{"begin":605,"end":609},"obj":"Species"},{"id":"347","span":{"begin":706,"end":710},"obj":"Species"},{"id":"348","span":{"begin":638,"end":647},"obj":"Chemical"},{"id":"349","span":{"begin":739,"end":748},"obj":"Chemical"}],"attributes":[{"id":"A328","pred":"tao:has_database_id","subj":"328","obj":"Tax:2697049"},{"id":"A329","pred":"tao:has_database_id","subj":"329","obj":"Tax:694009"},{"id":"A330","pred":"tao:has_database_id","subj":"330","obj":"Tax:2697049"},{"id":"A331","pred":"tao:has_database_id","subj":"331","obj":"Tax:694009"},{"id":"A333","pred":"tao:has_database_id","subj":"333","obj":"Tax:2697049"},{"id":"A338","pred":"tao:has_database_id","subj":"338","obj":"Tax:2697049"},{"id":"A339","pred":"tao:has_database_id","subj":"339","obj":"Tax:2697049"},{"id":"A346","pred":"tao:has_database_id","subj":"346","obj":"Tax:2697049"},{"id":"A347","pred":"tao:has_database_id","subj":"347","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T225","span":{"begin":100,"end":111},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T226","span":{"begin":112,"end":120},"obj":"SP_10"},{"id":"T227","span":{"begin":183,"end":194},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T228","span":{"begin":195,"end":203},"obj":"SP_10"},{"id":"T229","span":{"begin":272,"end":283},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T230","span":{"begin":356,"end":367},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T231","span":{"begin":425,"end":436},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T232","span":{"begin":527,"end":538},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T233","span":{"begin":614,"end":625},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T234","span":{"begin":715,"end":726},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T87728","span":{"begin":100,"end":111},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T92255","span":{"begin":112,"end":120},"obj":"SP_10"},{"id":"T69618","span":{"begin":183,"end":194},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T13352","span":{"begin":195,"end":203},"obj":"SP_10"},{"id":"T64310","span":{"begin":272,"end":283},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T56881","span":{"begin":356,"end":367},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T70997","span":{"begin":425,"end":436},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T65589","span":{"begin":527,"end":538},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T52528","span":{"begin":614,"end":625},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T46179","span":{"begin":715,"end":726},"obj":"CHEBI:60816;CHEBI:60816"}],"text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T25","span":{"begin":112,"end":116},"obj":"Disease"},{"id":"T26","span":{"begin":195,"end":199},"obj":"Disease"}],"attributes":[{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T265","span":{"begin":67,"end":75},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T266","span":{"begin":150,"end":158},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T267","span":{"begin":204,"end":212},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T268","span":{"begin":228,"end":236},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T269","span":{"begin":312,"end":320},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T270","span":{"begin":373,"end":381},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T271","span":{"begin":437,"end":445},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T272","span":{"begin":539,"end":547},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T273","span":{"begin":626,"end":634},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T274","span":{"begin":727,"end":735},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T150","span":{"begin":67,"end":75},"obj":"Chemical"},{"id":"T151","span":{"begin":150,"end":158},"obj":"Chemical"},{"id":"T152","span":{"begin":204,"end":212},"obj":"Chemical"},{"id":"T153","span":{"begin":228,"end":236},"obj":"Chemical"},{"id":"T154","span":{"begin":312,"end":320},"obj":"Chemical"},{"id":"T155","span":{"begin":373,"end":381},"obj":"Chemical"},{"id":"T156","span":{"begin":437,"end":445},"obj":"Chemical"},{"id":"T157","span":{"begin":539,"end":547},"obj":"Chemical"},{"id":"T158","span":{"begin":626,"end":634},"obj":"Chemical"},{"id":"T159","span":{"begin":727,"end":735},"obj":"Chemical"}],"attributes":[{"id":"A150","pred":"chebi_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A151","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A152","pred":"chebi_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A154","pred":"chebi_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A155","pred":"chebi_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A156","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A157","pred":"chebi_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A158","pred":"chebi_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A159","pred":"chebi_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)"}

{"project":"LitCovid-sentences","denotations":[{"id":"T236","span":{"begin":0,"end":213},"obj":"Sentence"},{"id":"T237","span":{"begin":214,"end":382},"obj":"Sentence"},{"id":"T238","span":{"begin":383,"end":571},"obj":"Sentence"},{"id":"T239","span":{"begin":572,"end":757},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"This project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)"}