PMC:7111504 / 21746-22863 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"320","span":{"begin":31,"end":40},"obj":"Species"},{"id":"321","span":{"begin":98,"end":106},"obj":"CellLine"},{"id":"323","span":{"begin":184,"end":193},"obj":"Species"},{"id":"328","span":{"begin":312,"end":316},"obj":"Species"},{"id":"329","span":{"begin":362,"end":370},"obj":"Species"},{"id":"330","span":{"begin":395,"end":399},"obj":"Species"},{"id":"331","span":{"begin":445,"end":453},"obj":"Species"},{"id":"333","span":{"begin":473,"end":477},"obj":"Species"},{"id":"338","span":{"begin":666,"end":670},"obj":"Species"},{"id":"339","span":{"begin":768,"end":772},"obj":"Species"},{"id":"340","span":{"begin":699,"end":708},"obj":"Chemical"},{"id":"341","span":{"begin":801,"end":810},"obj":"Chemical"},{"id":"346","span":{"begin":855,"end":859},"obj":"Species"},{"id":"347","span":{"begin":956,"end":960},"obj":"Species"},{"id":"348","span":{"begin":888,"end":897},"obj":"Chemical"},{"id":"349","span":{"begin":989,"end":998},"obj":"Chemical"}],"attributes":[{"id":"A320","pred":"tao:has_database_id","subj":"320","obj":"Tax:2697049"},{"id":"A321","pred":"tao:has_database_id","subj":"321","obj":"CVCL:U508"},{"id":"A323","pred":"tao:has_database_id","subj":"323","obj":"Tax:2697049"},{"id":"A328","pred":"tao:has_database_id","subj":"328","obj":"Tax:2697049"},{"id":"A329","pred":"tao:has_database_id","subj":"329","obj":"Tax:694009"},{"id":"A330","pred":"tao:has_database_id","subj":"330","obj":"Tax:2697049"},{"id":"A331","pred":"tao:has_database_id","subj":"331","obj":"Tax:694009"},{"id":"A333","pred":"tao:has_database_id","subj":"333","obj":"Tax:2697049"},{"id":"A338","pred":"tao:has_database_id","subj":"338","obj":"Tax:2697049"},{"id":"A339","pred":"tao:has_database_id","subj":"339","obj":"Tax:2697049"},{"id":"A346","pred":"tao:has_database_id","subj":"346","obj":"Tax:2697049"},{"id":"A347","pred":"tao:has_database_id","subj":"347","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Data availability\n\nSource data\n2019-nCoV open reading frame sequences were downloaded from NCBI ( MN908947.3).\n\nUnderlying data\nZenodo: In silico identification of vaccine targets for 2019-nCoV (Data tables). http://doi.org/10.5281/zenodo.3676886 10\nThis project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)\nData are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0)."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T222","span":{"begin":31,"end":40},"obj":"SP_7"},{"id":"T223","span":{"begin":41,"end":59},"obj":"SO:0000236"},{"id":"T224","span":{"begin":184,"end":193},"obj":"SP_7"},{"id":"T225","span":{"begin":350,"end":361},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T226","span":{"begin":362,"end":370},"obj":"SP_10"},{"id":"T227","span":{"begin":433,"end":444},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T228","span":{"begin":445,"end":453},"obj":"SP_10"},{"id":"T229","span":{"begin":522,"end":533},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T230","span":{"begin":606,"end":617},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T231","span":{"begin":675,"end":686},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T232","span":{"begin":777,"end":788},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T233","span":{"begin":864,"end":875},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T234","span":{"begin":965,"end":976},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T58035","span":{"begin":31,"end":40},"obj":"SP_7"},{"id":"T75411","span":{"begin":41,"end":59},"obj":"SO:0000236"},{"id":"T96821","span":{"begin":184,"end":193},"obj":"SP_7"},{"id":"T87728","span":{"begin":350,"end":361},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T92255","span":{"begin":362,"end":370},"obj":"SP_10"},{"id":"T69618","span":{"begin":433,"end":444},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T13352","span":{"begin":445,"end":453},"obj":"SP_10"},{"id":"T64310","span":{"begin":522,"end":533},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T56881","span":{"begin":606,"end":617},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T70997","span":{"begin":675,"end":686},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T65589","span":{"begin":777,"end":788},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T52528","span":{"begin":864,"end":875},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T46179","span":{"begin":965,"end":976},"obj":"CHEBI:60816;CHEBI:60816"}],"text":"Data availability\n\nSource data\n2019-nCoV open reading frame sequences were downloaded from NCBI ( MN908947.3).\n\nUnderlying data\nZenodo: In silico identification of vaccine targets for 2019-nCoV (Data tables). http://doi.org/10.5281/zenodo.3676886 10\nThis project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)\nData are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T25","span":{"begin":362,"end":366},"obj":"Disease"},{"id":"T26","span":{"begin":445,"end":449},"obj":"Disease"}],"attributes":[{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Data availability\n\nSource data\n2019-nCoV open reading frame sequences were downloaded from NCBI ( MN908947.3).\n\nUnderlying data\nZenodo: In silico identification of vaccine targets for 2019-nCoV (Data tables). http://doi.org/10.5281/zenodo.3676886 10\nThis project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)\nData are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T265","span":{"begin":317,"end":325},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T266","span":{"begin":400,"end":408},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T267","span":{"begin":454,"end":462},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T268","span":{"begin":478,"end":486},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T269","span":{"begin":562,"end":570},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T270","span":{"begin":623,"end":631},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T271","span":{"begin":687,"end":695},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T272","span":{"begin":789,"end":797},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T273","span":{"begin":876,"end":884},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T274","span":{"begin":977,"end":985},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"text":"Data availability\n\nSource data\n2019-nCoV open reading frame sequences were downloaded from NCBI ( MN908947.3).\n\nUnderlying data\nZenodo: In silico identification of vaccine targets for 2019-nCoV (Data tables). http://doi.org/10.5281/zenodo.3676886 10\nThis project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)\nData are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T150","span":{"begin":317,"end":325},"obj":"Chemical"},{"id":"T151","span":{"begin":400,"end":408},"obj":"Chemical"},{"id":"T152","span":{"begin":454,"end":462},"obj":"Chemical"},{"id":"T153","span":{"begin":478,"end":486},"obj":"Chemical"},{"id":"T154","span":{"begin":562,"end":570},"obj":"Chemical"},{"id":"T155","span":{"begin":623,"end":631},"obj":"Chemical"},{"id":"T156","span":{"begin":687,"end":695},"obj":"Chemical"},{"id":"T157","span":{"begin":789,"end":797},"obj":"Chemical"},{"id":"T158","span":{"begin":876,"end":884},"obj":"Chemical"},{"id":"T159","span":{"begin":977,"end":985},"obj":"Chemical"},{"id":"T160","span":{"begin":1106,"end":1108},"obj":"Chemical"}],"attributes":[{"id":"A150","pred":"chebi_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A151","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A152","pred":"chebi_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A154","pred":"chebi_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A155","pred":"chebi_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A156","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A157","pred":"chebi_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A158","pred":"chebi_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A159","pred":"chebi_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A160","pred":"chebi_id","subj":"T160","obj":"http://purl.obolibrary.org/obo/CHEBI_28940"}],"text":"Data availability\n\nSource data\n2019-nCoV open reading frame sequences were downloaded from NCBI ( MN908947.3).\n\nUnderlying data\nZenodo: In silico identification of vaccine targets for 2019-nCoV (Data tables). http://doi.org/10.5281/zenodo.3676886 10\nThis project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)\nData are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T230","span":{"begin":0,"end":17},"obj":"Sentence"},{"id":"T231","span":{"begin":19,"end":30},"obj":"Sentence"},{"id":"T232","span":{"begin":31,"end":110},"obj":"Sentence"},{"id":"T233","span":{"begin":112,"end":127},"obj":"Sentence"},{"id":"T234","span":{"begin":128,"end":135},"obj":"Sentence"},{"id":"T235","span":{"begin":136,"end":249},"obj":"Sentence"},{"id":"T236","span":{"begin":250,"end":463},"obj":"Sentence"},{"id":"T237","span":{"begin":464,"end":632},"obj":"Sentence"},{"id":"T238","span":{"begin":633,"end":821},"obj":"Sentence"},{"id":"T239","span":{"begin":822,"end":1007},"obj":"Sentence"},{"id":"T240","span":{"begin":1008,"end":1117},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Data availability\n\nSource data\n2019-nCoV open reading frame sequences were downloaded from NCBI ( MN908947.3).\n\nUnderlying data\nZenodo: In silico identification of vaccine targets for 2019-nCoV (Data tables). http://doi.org/10.5281/zenodo.3676886 10\nThis project contains the following underlying data: – Table1 nCoV peptides having exact match with immunogenic SARS CoV peptides.xlsx (Table of nCoV peptides having exact match with immunogenic SARS CoV peptides)\n– Table2 nCoV peptides with high sequence similarity with immunogenic IEDB peptides.csv (Table of peptides with high sequence similarity with immunogenic IEDB peptides)\n– Table3 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred.csv (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and iPred)\n– Table4 de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM.xlsx (Table of results of de novo search on 9-mer nCoV for immunogenic peptides by NetMHCpan and PWM)\nData are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0)."}