PMC:7111504 / 17236-18123 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"268","span":{"begin":32,"end":49},"obj":"Species"},{"id":"269","span":{"begin":241,"end":250},"obj":"Species"},{"id":"270","span":{"begin":265,"end":273},"obj":"Species"},{"id":"271","span":{"begin":405,"end":414},"obj":"Species"}],"attributes":[{"id":"A268","pred":"tao:has_database_id","subj":"268","obj":"Tax:2697049"},{"id":"A269","pred":"tao:has_database_id","subj":"269","obj":"Tax:2697049"},{"id":"A270","pred":"tao:has_database_id","subj":"270","obj":"Tax:694009"},{"id":"A271","pred":"tao:has_database_id","subj":"271","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T186","span":{"begin":38,"end":49},"obj":"NCBITaxon:11118"},{"id":"T187","span":{"begin":241,"end":250},"obj":"SP_7"},{"id":"T188","span":{"begin":265,"end":273},"obj":"SP_10"},{"id":"T189","span":{"begin":274,"end":285},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T190","span":{"begin":368,"end":379},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T191","span":{"begin":396,"end":400},"obj":"SP_10"},{"id":"T192","span":{"begin":405,"end":414},"obj":"SP_7"},{"id":"T88699","span":{"begin":38,"end":49},"obj":"NCBITaxon:11118"},{"id":"T36180","span":{"begin":241,"end":250},"obj":"SP_7"},{"id":"T25512","span":{"begin":265,"end":273},"obj":"SP_10"},{"id":"T97898","span":{"begin":274,"end":285},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T74245","span":{"begin":368,"end":379},"obj":"CHEBI:60816;CHEBI:60816"},{"id":"T63591","span":{"begin":396,"end":400},"obj":"SP_10"},{"id":"T88310","span":{"begin":405,"end":414},"obj":"SP_7"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T97","span":{"begin":548,"end":552},"obj":"Body_part"}],"attributes":[{"id":"A97","pred":"fma_id","subj":"T97","obj":"http://purl.org/sig/ont/fma/fma9712"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":548,"end":552},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0002398"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T21","span":{"begin":265,"end":269},"obj":"Disease"},{"id":"T22","span":{"begin":396,"end":400},"obj":"Disease"}],"attributes":[{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T219","span":{"begin":5,"end":6},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T220","span":{"begin":202,"end":203},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T221","span":{"begin":286,"end":294},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T222","span":{"begin":380,"end":387},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T223","span":{"begin":460,"end":461},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T224","span":{"begin":682,"end":683},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T120","span":{"begin":286,"end":294},"obj":"Chemical"},{"id":"T121","span":{"begin":380,"end":387},"obj":"Chemical"}],"attributes":[{"id":"A120","pred":"chebi_id","subj":"T120","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A121","pred":"chebi_id","subj":"T121","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}

{"project":"LitCovid-sentences","denotations":[{"id":"T190","span":{"begin":0,"end":140},"obj":"Sentence"},{"id":"T191","span":{"begin":141,"end":297},"obj":"Sentence"},{"id":"T192","span":{"begin":298,"end":534},"obj":"Sentence"},{"id":"T193","span":{"begin":535,"end":736},"obj":"Sentence"},{"id":"T194","span":{"begin":737,"end":887},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"With a rising global concern of novel coronavirus outbreak, numerous research groups have started to investigate and publish their findings. At the time of preparing this manuscript, we became aware of a similar study conducted in comparing 2019-nCoV proteome with SARS CoV immunogenic peptides 9. Our in silico approach takes the search beyond presenting only common immunogenic peptide between SARS and 2019-nCoV and provides the experimental community with a more comprehensive list including de novo and cross reactive candidates. On the other hand, considering the fact that two studies have been accomplished independently with distinct approaches, this serves to demonstrate a high level of confidence in reproducing the results. Reproducibility of computational prediction is always of high importance and becomes even more significant under urgent scenarios as of this outbreak."}