PMC:7111504 / 15817-16550 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"246","span":{"begin":10,"end":19},"obj":"Species"},{"id":"247","span":{"begin":42,"end":49},"obj":"Chemical"},{"id":"252","span":{"begin":222,"end":227},"obj":"Gene"},{"id":"253","span":{"begin":166,"end":169},"obj":"Gene"},{"id":"254","span":{"begin":245,"end":254},"obj":"Chemical"},{"id":"255","span":{"begin":267,"end":276},"obj":"Chemical"}],"attributes":[{"id":"A246","pred":"tao:has_database_id","subj":"246","obj":"Tax:2697049"},{"id":"A247","pred":"tao:has_database_id","subj":"247","obj":"MESH:D007930"},{"id":"A252","pred":"tao:has_database_id","subj":"252","obj":"Gene:3105"},{"id":"A253","pred":"tao:has_database_id","subj":"253","obj":"Gene:6962"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 5. 2019-nCoV 9-mer peptides having leucine-valine in anchor positions.\nPeptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nTLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB\nQLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB\nMLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB\nGLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB\nALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB\nYLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T178","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T179","span":{"begin":222,"end":227},"obj":"PR:000002009"},{"id":"T65632","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T76744","span":{"begin":222,"end":227},"obj":"PR:000002009"}],"text":"Table 5. 2019-nCoV 9-mer peptides having leucine-valine in anchor positions.\nPeptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nTLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB\nQLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB\nMLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB\nGLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB\nALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB\nYLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T94","span":{"begin":42,"end":49},"obj":"Body_part"},{"id":"T95","span":{"begin":50,"end":56},"obj":"Body_part"},{"id":"T96","span":{"begin":222,"end":225},"obj":"Body_part"}],"attributes":[{"id":"A94","pred":"fma_id","subj":"T94","obj":"http://purl.org/sig/ont/fma/fma82757"},{"id":"A95","pred":"fma_id","subj":"T95","obj":"http://purl.org/sig/ont/fma/fma82766"},{"id":"A96","pred":"fma_id","subj":"T96","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"Table 5. 2019-nCoV 9-mer peptides having leucine-valine in anchor positions.\nPeptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nTLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB\nQLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB\nMLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB\nGLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB\nALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB\nYLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T209","span":{"begin":26,"end":34},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T210","span":{"begin":78,"end":86},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T211","span":{"begin":226,"end":227},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T212","span":{"begin":284,"end":291},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T213","span":{"begin":308,"end":318},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"}],"text":"Table 5. 2019-nCoV 9-mer peptides having leucine-valine in anchor positions.\nPeptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nTLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB\nQLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB\nMLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB\nGLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB\nALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB\nYLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T114","span":{"begin":26,"end":34},"obj":"Chemical"},{"id":"T115","span":{"begin":42,"end":49},"obj":"Chemical"},{"id":"T116","span":{"begin":50,"end":56},"obj":"Chemical"},{"id":"T117","span":{"begin":284,"end":291},"obj":"Chemical"}],"attributes":[{"id":"A114","pred":"chebi_id","subj":"T114","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A115","pred":"chebi_id","subj":"T115","obj":"http://purl.obolibrary.org/obo/CHEBI_25017"},{"id":"A116","pred":"chebi_id","subj":"T116","obj":"http://purl.obolibrary.org/obo/CHEBI_27266"},{"id":"A117","pred":"chebi_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"Table 5. 2019-nCoV 9-mer peptides having leucine-valine in anchor positions.\nPeptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nTLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB\nQLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB\nMLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB\nGLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB\nALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB\nYLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB"}

{"project":"LitCovid-sentences","denotations":[{"id":"T175","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T176","span":{"begin":10,"end":77},"obj":"Sentence"},{"id":"T177","span":{"begin":78,"end":283},"obj":"Sentence"},{"id":"T178","span":{"begin":284,"end":362},"obj":"Sentence"},{"id":"T179","span":{"begin":363,"end":424},"obj":"Sentence"},{"id":"T180","span":{"begin":425,"end":486},"obj":"Sentence"},{"id":"T181","span":{"begin":487,"end":547},"obj":"Sentence"},{"id":"T182","span":{"begin":548,"end":609},"obj":"Sentence"},{"id":"T183","span":{"begin":610,"end":671},"obj":"Sentence"},{"id":"T184","span":{"begin":672,"end":733},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 5. 2019-nCoV 9-mer peptides having leucine-valine in anchor positions.\nPeptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nTLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB\nQLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB\nMLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB\nGLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB\nALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB\nYLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB"}