PMC:7111504 / 15817-16550
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 246 | 10-19 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 247 | 42-49 | Chemical | denotes | leucine | MESH:D007930 |
| 252 | 222-227 | Gene | denotes | HLA-A | Gene:3105 |
| 253 | 166-169 | Gene | denotes | TCR | Gene:6962 |
| 254 | 245-254 | Chemical | denotes | NetMHCpan | |
| 255 | 267-276 | Chemical | denotes | NetMHCpan |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T178 | 10-19 | SP_7 | denotes | 2019-nCoV |
| T179 | 222-227 | PR:000002009 | denotes | HLA-A |
| T65632 | 10-19 | SP_7 | denotes | 2019-nCoV |
| T76744 | 222-227 | PR:000002009 | denotes | HLA-A |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T94 | 42-49 | Body_part | denotes | leucine | http://purl.org/sig/ont/fma/fma82757 |
| T95 | 50-56 | Body_part | denotes | valine | http://purl.org/sig/ont/fma/fma82766 |
| T96 | 222-225 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T209 | 26-34 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptides |
| T210 | 78-86 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | Peptides |
| T211 | 226-227 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T212 | 284-291 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | Peptide |
| T213 | 308-318 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | Activation |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T114 | 26-34 | Chemical | denotes | peptides | http://purl.obolibrary.org/obo/CHEBI_16670 |
| T115 | 42-49 | Chemical | denotes | leucine | http://purl.obolibrary.org/obo/CHEBI_25017 |
| T116 | 50-56 | Chemical | denotes | valine | http://purl.obolibrary.org/obo/CHEBI_27266 |
| T117 | 284-291 | Chemical | denotes | Peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T175 | 0-8 | Sentence | denotes | Table 5. |
| T176 | 10-77 | Sentence | denotes | 2019-nCoV 9-mer peptides having leucine-valine in anchor positions. |
| T177 | 78-283 | Sentence | denotes | Peptides have geometric mean ≥ 0.6 and ≤ 0.7 (for those ≥ 0.7, refer to Table 4) by 1G4 TCR positional weight matrix and predicted positive for HLA-A*02:01 binding by NetMHCpan 4.0 (Rank = NetMHCpan rank). |
| T178 | 284-362 | Sentence | denotes | Peptide Binding score Activation score Killing score geoMean Rank Binder |
| T179 | 363-424 | Sentence | denotes | TLMNVLTLV 0.723687 0.658986 0.652178 0.677534 0.0444 SB |
| T180 | 425-486 | Sentence | denotes | QLEMELTPV 0.711291 0.651003 0.608605 0.655625 1.6769 WB |
| T181 | 487-547 | Sentence | denotes | MLAKALRKV 0.668756 0.610664 0.65968 0.645854 0.3524 SB |
| T182 | 548-609 | Sentence | denotes | GLFKDCSKV 0.675952 0.632375 0.594753 0.633494 0.2677 SB |
| T183 | 610-671 | Sentence | denotes | ALSKGVHFV 0.652549 0.604952 0.586236 0.613954 0.0425 SB |
| T184 | 672-733 | Sentence | denotes | YLNTLTLAV 0.624147 0.610826 0.575445 0.603119 0.0453 SB |