PMC:7111504 / 14049-15145 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"221","span":{"begin":128,"end":133},"obj":"Gene"},{"id":"222","span":{"begin":68,"end":71},"obj":"Gene"},{"id":"223","span":{"begin":10,"end":19},"obj":"Species"},{"id":"224","span":{"begin":143,"end":152},"obj":"Chemical"},{"id":"225","span":{"begin":165,"end":174},"obj":"Chemical"}],"attributes":[{"id":"A221","pred":"tao:has_database_id","subj":"221","obj":"Gene:3105"},{"id":"A222","pred":"tao:has_database_id","subj":"222","obj":"Gene:6962"},{"id":"A223","pred":"tao:has_database_id","subj":"223","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nRIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB\nALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB\nLLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB\nMIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB\nVLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB\nNVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB\nRLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB\nKLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB\nQLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB\nVQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB\nLLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB\nSVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB\nLMWLIINLV 0.727847374 0.681119 0.694007 0.700717 1.304 WB"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T168","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T169","span":{"begin":128,"end":133},"obj":"PR:000002009"},{"id":"T241","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T1071","span":{"begin":128,"end":133},"obj":"PR:000002009"}],"text":"Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nRIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB\nALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB\nLLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB\nMIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB\nVLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB\nNVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB\nRLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB\nKLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB\nQLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB\nVQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB\nLLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB\nSVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB\nLMWLIINLV 0.727847374 0.681119 0.694007 0.700717 1.304 WB"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T84","span":{"begin":128,"end":131},"obj":"Body_part"}],"attributes":[{"id":"A84","pred":"fma_id","subj":"T84","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nRIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB\nALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB\nLLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB\nMIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB\nVLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB\nNVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB\nRLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB\nKLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB\nQLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB\nVQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB\nLLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB\nSVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB\nLMWLIINLV 0.727847374 0.681119 0.694007 0.700717 1.304 WB"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T193","span":{"begin":26,"end":34},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T194","span":{"begin":132,"end":133},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T195","span":{"begin":182,"end":189},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T196","span":{"begin":206,"end":216},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"}],"text":"Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nRIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB\nALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB\nLLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB\nMIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB\nVLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB\nNVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB\nRLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB\nKLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB\nQLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB\nVQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB\nLLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB\nSVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB\nLMWLIINLV 0.727847374 0.681119 0.694007 0.700717 1.304 WB"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T97","span":{"begin":26,"end":34},"obj":"Chemical"},{"id":"T98","span":{"begin":182,"end":189},"obj":"Chemical"}],"attributes":[{"id":"A97","pred":"chebi_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A98","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nRIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB\nALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB\nLLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB\nMIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB\nVLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB\nNVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB\nRLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB\nKLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB\nQLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB\nVQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB\nLLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB\nSVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB\nLMWLIINLV 0.727847374 0.681119 0.694007 0.700717 1.304 WB"}

{"project":"LitCovid-sentences","denotations":[{"id":"T156","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T157","span":{"begin":10,"end":181},"obj":"Sentence"},{"id":"T158","span":{"begin":182,"end":260},"obj":"Sentence"},{"id":"T159","span":{"begin":261,"end":325},"obj":"Sentence"},{"id":"T160","span":{"begin":326,"end":389},"obj":"Sentence"},{"id":"T161","span":{"begin":390,"end":452},"obj":"Sentence"},{"id":"T162","span":{"begin":453,"end":517},"obj":"Sentence"},{"id":"T163","span":{"begin":518,"end":581},"obj":"Sentence"},{"id":"T164","span":{"begin":582,"end":646},"obj":"Sentence"},{"id":"T165","span":{"begin":647,"end":711},"obj":"Sentence"},{"id":"T166","span":{"begin":712,"end":776},"obj":"Sentence"},{"id":"T167","span":{"begin":777,"end":840},"obj":"Sentence"},{"id":"T168","span":{"begin":841,"end":905},"obj":"Sentence"},{"id":"T169","span":{"begin":906,"end":968},"obj":"Sentence"},{"id":"T170","span":{"begin":969,"end":1032},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).\nPeptide Binding score Activation score Killing score geoMean Rank Binder\nRIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB\nALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB\nLLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB\nMIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB\nVLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB\nNVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB\nRLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB\nKLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB\nQLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB\nVQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB\nLLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB\nSVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB\nLMWLIINLV 0.727847374 0.681119 0.694007 0.700717 1.304 WB"}