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PMC:7111504 / 14049-15145 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
221 128-133 Gene denotes HLA-A Gene:3105
222 68-71 Gene denotes TCR Gene:6962
223 10-19 Species denotes 2019-nCoV Tax:2697049
224 143-152 Chemical denotes NetMHCpan
225 165-174 Chemical denotes NetMHCpan

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T168 10-19 SP_7 denotes 2019-nCoV
T169 128-133 PR:000002009 denotes HLA-A
T241 10-19 SP_7 denotes 2019-nCoV
T1071 128-133 PR:000002009 denotes HLA-A

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T84 128-131 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T193 26-34 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T194 132-133 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T195 182-189 http://purl.obolibrary.org/obo/PR_000018263 denotes Peptide
T196 206-216 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activation

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T97 26-34 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T98 182-189 Chemical denotes Peptide http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T156 0-8 Sentence denotes Table 4.
T157 10-181 Sentence denotes 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).
T158 182-260 Sentence denotes Peptide Binding score Activation score Killing score geoMean Rank Binder
T159 261-325 Sentence denotes RIMTWLDMV 0.866377428 0.853995 0.776303 0.831249 0.3481 SB
T160 326-389 Sentence denotes ALNTLVKQL 0.802453741 0.75073 0.785957 0.779413 0.6159 WB
T161 390-452 Sentence denotes LLLDRLNQL 0.809895414 0.7752 0.741096 0.774888 0.0423 SB
T162 453-517 Sentence denotes MIAQYTSAL 0.766262499 0.789511 0.749477 0.768242 0.9238 WB
T163 518-581 Sentence denotes VLSTFISAA 0.799672451 0.756117 0.687278 0.746239 0.536 WB
T164 582-646 Sentence denotes NVLAWLYAA 0.761297552 0.686117 0.739944 0.728423 1.4457 WB
T165 647-711 Sentence denotes RLANECAQV 0.783161706 0.719705 0.680504 0.726572 0.2049 SB
T166 712-776 Sentence denotes KLLKSIAAT 0.748896679 0.708996 0.697463 0.718118 1.0923 WB
T167 777-840 Sentence denotes QLSLPVLQV 0.70128376 0.715259 0.708405 0.708293 0.4768 SB
T168 841-905 Sentence denotes VQMAPISAM 0.729320768 0.698514 0.689612 0.705612 1.4677 WB
T169 906-968 Sentence denotes LLLTILTSL 0.7131709 0.715194 0.680064 0.702623 0.2712 SB
T170 969-1032 Sentence denotes SVLLFLAFV 0.736972762 0.690855 0.679534 0.70202 1.1449 WB