PMC:7111504 / 11215-12084 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"158","span":{"begin":10,"end":19},"obj":"Species"},{"id":"159","span":{"begin":80,"end":89},"obj":"Chemical"}],"attributes":[{"id":"A158","pred":"tao:has_database_id","subj":"158","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T132","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T133","span":{"begin":69,"end":76},"obj":"SO:0001023"},{"id":"T134","span":{"begin":131,"end":138},"obj":"SO:0001023"},{"id":"T135","span":{"begin":143,"end":157},"obj":"BV_15"},{"id":"T136","span":{"begin":194,"end":201},"obj":"SO:0001023"},{"id":"T137","span":{"begin":274,"end":280},"obj":"SO:0001023"},{"id":"T69709","span":{"begin":10,"end":19},"obj":"SP_7"},{"id":"T97652","span":{"begin":69,"end":76},"obj":"SO:0001023"},{"id":"T30189","span":{"begin":131,"end":138},"obj":"SO:0001023"},{"id":"T17570","span":{"begin":143,"end":157},"obj":"BV_15"},{"id":"T56623","span":{"begin":194,"end":201},"obj":"SO:0001023"},{"id":"T32084","span":{"begin":274,"end":280},"obj":"SO:0001023"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T67","span":{"begin":65,"end":68},"obj":"Body_part"},{"id":"T68","span":{"begin":127,"end":130},"obj":"Body_part"},{"id":"T69","span":{"begin":270,"end":273},"obj":"Body_part"},{"id":"T70","span":{"begin":373,"end":376},"obj":"Body_part"}],"attributes":[{"id":"A67","pred":"fma_id","subj":"T67","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A68","pred":"fma_id","subj":"T68","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A69","pred":"fma_id","subj":"T69","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A70","pred":"fma_id","subj":"T70","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T14","span":{"begin":315,"end":317},"obj":"Disease"},{"id":"T15","span":{"begin":325,"end":327},"obj":"Disease"},{"id":"T16","span":{"begin":335,"end":337},"obj":"Disease"},{"id":"T17","span":{"begin":345,"end":347},"obj":"Disease"},{"id":"T18","span":{"begin":355,"end":357},"obj":"Disease"}],"attributes":[{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0005072"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0005072"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0005072"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005072"},{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005072"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T151","span":{"begin":26,"end":34},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T152","span":{"begin":401,"end":405},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T153","span":{"begin":407,"end":414},"obj":"http://purl.obolibrary.org/obo/CLO_0053001"},{"id":"T154","span":{"begin":439,"end":443},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T155","span":{"begin":445,"end":452},"obj":"http://purl.obolibrary.org/obo/CLO_0053001"},{"id":"T156","span":{"begin":474,"end":478},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T157","span":{"begin":512,"end":516},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T158","span":{"begin":549,"end":553},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T159","span":{"begin":634,"end":638},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T160","span":{"begin":739,"end":743},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T161","span":{"begin":777,"end":781},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T162","span":{"begin":818,"end":822},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T84","span":{"begin":26,"end":34},"obj":"Chemical"}],"attributes":[{"id":"A84","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}

{"project":"LitCovid-sentences","denotations":[{"id":"T123","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T124","span":{"begin":10,"end":179},"obj":"Sentence"},{"id":"T125","span":{"begin":180,"end":281},"obj":"Sentence"},{"id":"T126","span":{"begin":282,"end":376},"obj":"Sentence"},{"id":"T127","span":{"begin":377,"end":414},"obj":"Sentence"},{"id":"T128","span":{"begin":415,"end":452},"obj":"Sentence"},{"id":"T129","span":{"begin":453,"end":490},"obj":"Sentence"},{"id":"T130","span":{"begin":491,"end":528},"obj":"Sentence"},{"id":"T131","span":{"begin":529,"end":565},"obj":"Sentence"},{"id":"T132","span":{"begin":566,"end":603},"obj":"Sentence"},{"id":"T133","span":{"begin":604,"end":641},"obj":"Sentence"},{"id":"T134","span":{"begin":642,"end":679},"obj":"Sentence"},{"id":"T135","span":{"begin":680,"end":717},"obj":"Sentence"},{"id":"T136","span":{"begin":718,"end":755},"obj":"Sentence"},{"id":"T137","span":{"begin":756,"end":793},"obj":"Sentence"},{"id":"T138","span":{"begin":794,"end":831},"obj":"Sentence"},{"id":"T139","span":{"begin":832,"end":869},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 3. 2019-nCoV 9-mer peptides predicted to bind 4 different HLA alleles by NetMHCpan 4.0, and those predicted to bind ≥ 3 HLA alleles and immunogenicity score ≥ 0.9 by iPred.\nFor different alleles, 0 denotes non-binding and 1 denotes binding predicted for specific HLA allele.\nAntigen.epitope Imm.prob A0101.NB A0201.NB B0702.NB B4001.NB C0702.NB Total binding HLA\nVQMAPISAM 0.893938 0 1 1 1 1 4\nAMYTPHTVL 0.862427 0 1 1 1 1 4\nTLDSKTQSL 0.254998 1 1 1 0 1 4\nKVDGVVQQL 0.191786 1 1 1 0 1 4\nKVDGVDVEL 0.18632 1 1 1 0 1 4\nMADQAMTQM 0.991227 1 0 1 0 1 3\nLEAPFLYLY 0.983072 1 0 0 1 1 3\nRTAPHGHVM 0.972153 1 0 1 0 1 3\nIPFAMQMAY 0.961569 1 0 1 0 1 3\nFLTENLLLY 0.951715 1 1 0 0 1 3\nYLQPRTFLL 0.947743 1 1 0 0 1 3\nMMISAGFSL 0.941318 0 1 1 0 1 3\nATLPKGIMM 0.926603 1 0 1 0 1 3"}